data_4ZPI
#
_model_server_result.job_id            x0cdjzdiuU7urJ_-CiBiEg 
_model_server_result.datetime_utc      '2025-02-28 23:20:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zpi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":302}' 
#
_entry.id    4ZPI 
#
_exptl.entry_id    4ZPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZPI 
_cell.length_a            54.4 
_cell.length_b            108.989 
_cell.length_c            221.584 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 E FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc2 A NE2 HIS 206 A HIS 206 1_555 E FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc3 B NE2 HIS 102 B HIS 102 1_555 F FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc4 B NE2 HIS 206 B HIS 206 1_555 F FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc5 F FE FE2 . B FE2 301 1_555 G O3 SIN . B SIN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc6 C NE2 HIS 102 C HIS 102 1_555 H FE FE2 . C FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc7 C NE2 HIS 206 C HIS 206 1_555 H FE FE2 . C FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc8 H FE FE2 . C FE2 301 1_555 I O3 SIN . C SIN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
metalc ? metalc9 D NE2 HIS 102 D HIS 102 1_555 J FE FE2 . D FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc10 D NE2 HIS 206 D HIS 206 1_555 J FE FE2 . D FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc11 J FE FE2 . D FE2 301 1_555 K O1 SIN . D SIN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc12 J FE FE2 . D FE2 301 1_555 O O HOH . D HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SIN doub 290 n n 
C1 O2 SIN sing 291 n n 
C1 C2 SIN sing 292 n n 
O2 HO2 SIN sing 293 n n 
C2 C3 SIN sing 294 n n 
C2 H21 SIN sing 295 n n 
C2 H22 SIN sing 296 n n 
C3 C4 SIN sing 297 n n 
C3 H31 SIN sing 298 n n 
C3 H32 SIN sing 299 n n 
C4 O3 SIN doub 300 n n 
C4 O4 SIN sing 301 n n 
O4 HO4 SIN sing 302 n n 
#
_atom_sites.entry_id                     4ZPI 
_atom_sites.fract_transf_matrix[1][1]    0.018382 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009175 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FE2 A 1 301 260 FE2 FE2 . 
F 2 FE2 B 1 301 260 FE2 FE2 . 
G 3 SIN B 1 302 261 SIN SIN . 
H 2 FE2 C 1 301 260 FE2 FE2 . 
I 3 SIN C 1 302 261 SIN SIN . 
J 2 FE2 D 1 301 260 FE2 FE2 . 
K 3 SIN D 1 302 261 SIN SIN . 
L 4 HOH A 1 401 266 HOH HOH . 
L 4 HOH A 2 402 263 HOH HOH . 
L 4 HOH A 3 403 287 HOH HOH . 
L 4 HOH A 4 404 274 HOH HOH . 
L 4 HOH A 5 405 284 HOH HOH . 
L 4 HOH A 6 406 293 HOH HOH . 
L 4 HOH A 7 407 290 HOH HOH . 
L 4 HOH A 8 408 301 HOH HOH . 
L 4 HOH A 9 409 285 HOH HOH . 
L 4 HOH A 10 410 268 HOH HOH . 
L 4 HOH A 11 411 282 HOH HOH . 
L 4 HOH A 12 412 278 HOH HOH . 
L 4 HOH A 13 413 276 HOH HOH . 
L 4 HOH A 14 414 277 HOH HOH . 
L 4 HOH A 15 415 300 HOH HOH . 
L 4 HOH A 16 416 273 HOH HOH . 
L 4 HOH A 17 417 270 HOH HOH . 
L 4 HOH A 18 418 267 HOH HOH . 
L 4 HOH A 19 419 280 HOH HOH . 
L 4 HOH A 20 420 289 HOH HOH . 
L 4 HOH A 21 421 272 HOH HOH . 
L 4 HOH A 22 422 291 HOH HOH . 
L 4 HOH A 23 423 269 HOH HOH . 
L 4 HOH A 24 424 265 HOH HOH . 
L 4 HOH A 25 425 284 HOH HOH . 
L 4 HOH A 26 426 297 HOH HOH . 
L 4 HOH A 27 427 296 HOH HOH . 
L 4 HOH A 28 428 283 HOH HOH . 
L 4 HOH A 29 429 276 HOH HOH . 
L 4 HOH A 30 430 264 HOH HOH . 
L 4 HOH A 31 431 275 HOH HOH . 
L 4 HOH A 32 432 271 HOH HOH . 
L 4 HOH A 33 433 299 HOH HOH . 
L 4 HOH A 34 434 302 HOH HOH . 
L 4 HOH A 35 435 281 HOH HOH . 
L 4 HOH A 36 436 292 HOH HOH . 
L 4 HOH A 37 437 298 HOH HOH . 
L 4 HOH A 38 438 288 HOH HOH . 
M 4 HOH B 1 401 267 HOH HOH . 
M 4 HOH B 2 402 297 HOH HOH . 
M 4 HOH B 3 403 298 HOH HOH . 
M 4 HOH B 4 404 296 HOH HOH . 
M 4 HOH B 5 405 263 HOH HOH . 
M 4 HOH B 6 406 279 HOH HOH . 
M 4 HOH B 7 407 283 HOH HOH . 
M 4 HOH B 8 408 291 HOH HOH . 
M 4 HOH B 9 409 269 HOH HOH . 
M 4 HOH B 10 410 299 HOH HOH . 
M 4 HOH B 11 411 278 HOH HOH . 
M 4 HOH B 12 412 277 HOH HOH . 
M 4 HOH B 13 413 292 HOH HOH . 
M 4 HOH B 14 414 273 HOH HOH . 
M 4 HOH B 15 415 286 HOH HOH . 
M 4 HOH B 16 416 290 HOH HOH . 
M 4 HOH B 17 417 293 HOH HOH . 
M 4 HOH B 18 418 289 HOH HOH . 
M 4 HOH B 19 419 276 HOH HOH . 
M 4 HOH B 20 420 288 HOH HOH . 
M 4 HOH B 21 421 295 HOH HOH . 
M 4 HOH B 22 422 264 HOH HOH . 
M 4 HOH B 23 423 284 HOH HOH . 
M 4 HOH B 24 424 281 HOH HOH . 
M 4 HOH B 25 425 272 HOH HOH . 
M 4 HOH B 26 426 280 HOH HOH . 
M 4 HOH B 27 427 287 HOH HOH . 
M 4 HOH B 28 428 270 HOH HOH . 
M 4 HOH B 29 429 286 HOH HOH . 
M 4 HOH B 30 430 271 HOH HOH . 
M 4 HOH B 31 431 265 HOH HOH . 
M 4 HOH B 32 432 268 HOH HOH . 
M 4 HOH B 33 433 282 HOH HOH . 
M 4 HOH B 34 434 285 HOH HOH . 
M 4 HOH B 35 435 275 HOH HOH . 
N 4 HOH C 1 401 272 HOH HOH . 
N 4 HOH C 2 402 270 HOH HOH . 
N 4 HOH C 3 403 280 HOH HOH . 
N 4 HOH C 4 404 275 HOH HOH . 
N 4 HOH C 5 405 278 HOH HOH . 
N 4 HOH C 6 406 277 HOH HOH . 
N 4 HOH C 7 407 269 HOH HOH . 
N 4 HOH C 8 408 267 HOH HOH . 
N 4 HOH C 9 409 268 HOH HOH . 
N 4 HOH C 10 410 295 HOH HOH . 
N 4 HOH C 11 411 289 HOH HOH . 
N 4 HOH C 12 412 288 HOH HOH . 
N 4 HOH C 13 413 271 HOH HOH . 
N 4 HOH C 14 414 273 HOH HOH . 
N 4 HOH C 15 415 263 HOH HOH . 
N 4 HOH C 16 416 264 HOH HOH . 
N 4 HOH C 17 417 287 HOH HOH . 
N 4 HOH C 18 418 281 HOH HOH . 
N 4 HOH C 19 419 274 HOH HOH . 
N 4 HOH C 20 420 283 HOH HOH . 
N 4 HOH C 21 421 303 HOH HOH . 
N 4 HOH C 22 422 282 HOH HOH . 
N 4 HOH C 23 423 266 HOH HOH . 
N 4 HOH C 24 424 265 HOH HOH . 
N 4 HOH C 25 425 279 HOH HOH . 
N 4 HOH C 26 426 286 HOH HOH . 
N 4 HOH C 27 427 291 HOH HOH . 
N 4 HOH C 28 428 290 HOH HOH . 
O 4 HOH D 1 401 295 HOH HOH . 
O 4 HOH D 2 402 276 HOH HOH . 
O 4 HOH D 3 403 269 HOH HOH . 
O 4 HOH D 4 404 273 HOH HOH . 
O 4 HOH D 5 405 274 HOH HOH . 
O 4 HOH D 6 406 287 HOH HOH . 
O 4 HOH D 7 407 279 HOH HOH . 
O 4 HOH D 8 408 277 HOH HOH . 
O 4 HOH D 9 409 278 HOH HOH . 
O 4 HOH D 10 410 271 HOH HOH . 
O 4 HOH D 11 411 281 HOH HOH . 
O 4 HOH D 12 412 294 HOH HOH . 
O 4 HOH D 13 413 296 HOH HOH . 
O 4 HOH D 14 414 266 HOH HOH . 
O 4 HOH D 15 415 289 HOH HOH . 
O 4 HOH D 16 416 275 HOH HOH . 
O 4 HOH D 17 417 280 HOH HOH . 
O 4 HOH D 18 418 290 HOH HOH . 
O 4 HOH D 19 419 267 HOH HOH . 
O 4 HOH D 20 420 272 HOH HOH . 
O 4 HOH D 21 421 274 HOH HOH . 
O 4 HOH D 22 422 283 HOH HOH . 
O 4 HOH D 23 423 293 HOH HOH . 
O 4 HOH D 24 424 285 HOH HOH . 
O 4 HOH D 25 425 297 HOH HOH . 
O 4 HOH D 26 426 264 HOH HOH . 
O 4 HOH D 27 427 282 HOH HOH . 
O 4 HOH D 28 428 270 HOH HOH . 
O 4 HOH D 29 429 291 HOH HOH . 
O 4 HOH D 30 430 279 HOH HOH . 
O 4 HOH D 31 431 284 HOH HOH . 
O 4 HOH D 32 432 265 HOH HOH . 
O 4 HOH D 33 433 268 HOH HOH . 
O 4 HOH D 34 434 288 HOH HOH . 
O 4 HOH D 35 435 263 HOH HOH . 
O 4 HOH D 36 436 292 HOH HOH . 
O 4 HOH D 37 437 286 HOH HOH . 
O 4 HOH D 38 438 266 HOH HOH . 
O 4 HOH D 39 439 294 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . K 3 -47.377 16.391 229.149 1 56.35 ? C1 SIN 302 D 1 
HETATM 2 O O1 SIN . . . K 3 -48.342 15.7 229.59 1 59.83 ? O1 SIN 302 D 1 
HETATM 3 O O2 SIN . . . K 3 -46.474 16.812 229.927 1 53.91 ? O2 SIN 302 D 1 
HETATM 4 C C2 SIN . . . K 3 -47.278 16.732 227.669 1 47.32 ? C2 SIN 302 D 1 
HETATM 5 C C3 SIN . . . K 3 -46.099 17.682 227.522 1 46.04 ? C3 SIN 302 D 1 
HETATM 6 C C4 SIN . . . K 3 -46.164 18.22 226.109 1 49.74 ? C4 SIN 302 D 1 
HETATM 7 O O3 SIN . . . K 3 -46.737 17.512 225.231 1 48.45 ? O3 SIN 302 D 1 
HETATM 8 O O4 SIN . . . K 3 -45.663 19.355 225.854 1 45.21 ? O4 SIN 302 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           405 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           8 
#