data_4ZPL # _model_server_result.job_id YdM6bERAdKufOqZ9wl8LCw _model_server_result.datetime_utc '2025-09-04 20:59:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":413}' # _entry.id 4ZPL # _exptl.entry_id 4ZPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZPL _cell.length_a 74.99 _cell.length_b 106.52 _cell.length_c 149.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 320 NAG 2 n B NAG 2 B 2 NAG A 321 NAG 2 n B BMA 3 B 3 BMA A 328 BMA 2 n B FUC 4 B 4 FUC A 322 FUC 2 n C NAG 1 C 1 NAG A 323 NAG 2 n C NAG 2 C 2 NAG A 324 NAG 2 n C BMA 3 C 3 BMA A 329 BMA 2 n C FUC 4 C 4 FUC A 325 FUC 2 n D NAG 1 D 1 NAG A 326 NAG 2 n D NAG 2 D 2 NAG A 327 NAG 2 n D BMA 3 D 3 BMA A 331 BMA 2 n D FUC 4 D 4 FUC A 330 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 68 1_555 A SG CYS 74 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 141 A ASN 141 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 181 A ASN 181 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 229 A ASN 229 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OE1 GLU 9 A GLU 9 1_555 E CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc2 A OE2 GLU 9 A GLU 9 1_555 E CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc3 A OE2 GLU 9 A GLU 9 1_555 F CA CA . A CA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc4 A OE2 GLU 10 A GLU 10 1_555 F CA CA . A CA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc5 A OD1 ASP 63 A ASP 63 1_555 F CA CA . A CA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 A OE1 GLU 65 A GLU 65 1_555 E CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc7 A OE2 GLU 65 A GLU 65 1_555 E CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc8 A OE2 GLU 65 A GLU 65 1_555 F CA CA . A CA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc9 A OD1 ASP 97 A ASP 97 1_555 E CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc10 A O ILE 98 A ILE 98 1_555 E CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc11 A OD1 ASN 99 A ASN 99 1_555 G CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc12 A OD1 ASP 100 A ASP 100 1_555 E CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc13 A OD2 ASP 100 A ASP 100 1_555 F CA CA . A CA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc14 A O ASN 101 A ASN 101 1_555 G CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc15 A OE1 GLU 116 A GLU 116 1_555 H CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc16 A OE2 GLU 116 A GLU 116 1_555 I CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc17 A OD1 ASP 131 A ASP 131 1_555 G CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc18 A OD2 ASP 131 A ASP 131 1_555 G CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc19 A OD1 ASP 133 A ASP 133 1_555 E CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc20 A OD2 ASP 133 A ASP 133 1_555 G CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc21 A O ASN 137 A ASN 137 1_555 G CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc22 A OD1 ASP 173 A ASP 173 1_555 I CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc23 A OE2 GLU 175 A GLU 175 1_555 H CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc24 A OE1 GLU 175 A GLU 175 1_555 I CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc25 A OD2 ASP 188 A ASP 188 1_555 G CA CA . A CA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc26 A O VAL 207 A VAL 207 1_555 H CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc27 A OD1 ASN 208 A ASN 208 1_555 J CA CA . A CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc28 A OD1 ASP 209 A ASP 209 1_555 H CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc29 A OD2 ASP 209 A ASP 209 1_555 I CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc30 A O HIS 210 A HIS 210 1_555 J CA CA . A CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc31 A OD1 ASP 240 A ASP 240 1_555 J CA CA . A CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc32 A OD2 ASP 240 A ASP 240 1_555 J CA CA . A CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc33 A OD1 ASP 242 A ASP 242 1_555 H CA CA . A CA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc34 A OD2 ASP 242 A ASP 242 1_555 J CA CA . A CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc35 A OD2 ASP 295 A ASP 295 1_555 J CA CA . A CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZPL _atom_sites.fract_transf_matrix[1][1] 0.013335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 413 1 CA CA . F 3 CA A 1 414 2 CA CA . G 3 CA A 1 415 3 CA CA . H 3 CA A 1 416 4 CA CA . I 3 CA A 1 417 5 CA CA . J 3 CA A 1 418 6 CA CA . K 4 HOH A 1 501 4 HOH HOH . K 4 HOH A 2 502 1 HOH HOH . K 4 HOH A 3 503 3 HOH HOH . K 4 HOH A 4 504 2 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -38.739 _atom_site.Cartn_y -12.562 _atom_site.Cartn_z -14.243 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 413 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #