data_4ZQF
#
_model_server_result.job_id            p9OXRHZYykGXkuhuxZiCHQ 
_model_server_result.datetime_utc      '2024-11-23 21:07:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zqf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    4ZQF 
#
_exptl.entry_id    4ZQF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              183.1 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4ZQF 
_cell.length_a            66.55 
_cell.length_b            66.55 
_cell.length_c            389.479 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZQF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 171 A ASP 153 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc2 A OD2 ASP 171 A ASP 153 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc3 A OE2 GLU 173 A GLU 155 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc4 A OE2 GLU 252 A GLU 234 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc5 C MG MG . A MG 601 1_555 D O2 FOM . A FOM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc6 C MG MG . A MG 601 1_555 D O1 FOM . A FOM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc7 B OD1 ASP 171 B ASP 153 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc8 B OD2 ASP 171 B ASP 153 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc9 B OE2 GLU 173 B GLU 155 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc10 B OE2 GLU 252 B GLU 234 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc11 E MG MG . B MG 601 1_555 F O2 FOM . B FOM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? 
metalc ? metalc12 E MG MG . B MG 601 1_555 F O1 FOM . B FOM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
#
_chem_comp.formula           'C4 H10 N O5 P' 
_chem_comp.formula_weight    183.1 
_chem_comp.id                FOM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     FOSMIDOMYCIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 N1 FOM sing 83 n n 
O2 HO2 FOM sing 84 n n 
N1 C1 FOM sing 85 n n 
N1 C2 FOM sing 86 n n 
C1 O1 FOM doub 87 n n 
C1 H1 FOM sing 88 n n 
C2 C3 FOM sing 89 n n 
C2 H21 FOM sing 90 n n 
C2 H22 FOM sing 91 n n 
C3 C4 FOM sing 92 n n 
C3 H31 FOM sing 93 n n 
C3 H32 FOM sing 94 n n 
C4 PA1 FOM sing 95 n n 
C4 H41 FOM sing 96 n n 
C4 H42 FOM sing 97 n n 
PA1 OP1 FOM doub 98 n n 
PA1 OP2 FOM sing 99 n n 
PA1 OP3 FOM sing 100 n n 
OP2 HP2 FOM sing 101 n n 
OP3 HP3 FOM sing 102 n n 
#
_atom_sites.entry_id                     4ZQF 
_atom_sites.fract_transf_matrix[1][1]    0.015026 
_atom_sites.fract_transf_matrix[1][2]    0.008675 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 601 601 MG MG . 
D 3 FOM A 1 602 701 FOM FOM . 
E 2 MG B 1 601 601 MG MG . 
F 3 FOM B 1 602 701 FOM FOM . 
G 4 HOH A 1 701 182 HOH HOH . 
G 4 HOH A 2 702 134 HOH HOH . 
G 4 HOH A 3 703 22 HOH HOH . 
G 4 HOH A 4 704 18 HOH HOH . 
G 4 HOH A 5 705 9 HOH HOH . 
G 4 HOH A 6 706 163 HOH HOH . 
G 4 HOH A 7 707 161 HOH HOH . 
G 4 HOH A 8 708 185 HOH HOH . 
G 4 HOH A 9 709 65 HOH HOH . 
G 4 HOH A 10 710 104 HOH HOH . 
G 4 HOH A 11 711 25 HOH HOH . 
G 4 HOH A 12 712 102 HOH HOH . 
G 4 HOH A 13 713 8 HOH HOH . 
G 4 HOH A 14 714 125 HOH HOH . 
G 4 HOH A 15 715 45 HOH HOH . 
G 4 HOH A 16 716 188 HOH HOH . 
G 4 HOH A 17 717 112 HOH HOH . 
G 4 HOH A 18 718 133 HOH HOH . 
G 4 HOH A 19 719 147 HOH HOH . 
G 4 HOH A 20 720 116 HOH HOH . 
G 4 HOH A 21 721 128 HOH HOH . 
G 4 HOH A 22 722 82 HOH HOH . 
G 4 HOH A 23 723 37 HOH HOH . 
G 4 HOH A 24 724 193 HOH HOH . 
G 4 HOH A 25 725 21 HOH HOH . 
G 4 HOH A 26 726 61 HOH HOH . 
G 4 HOH A 27 727 46 HOH HOH . 
G 4 HOH A 28 728 78 HOH HOH . 
G 4 HOH A 29 729 76 HOH HOH . 
G 4 HOH A 30 730 15 HOH HOH . 
G 4 HOH A 31 731 121 HOH HOH . 
G 4 HOH A 32 732 73 HOH HOH . 
G 4 HOH A 33 733 103 HOH HOH . 
G 4 HOH A 34 734 154 HOH HOH . 
G 4 HOH A 35 735 1 HOH HOH . 
G 4 HOH A 36 736 27 HOH HOH . 
G 4 HOH A 37 737 90 HOH HOH . 
G 4 HOH A 38 738 110 HOH HOH . 
G 4 HOH A 39 739 38 HOH HOH . 
G 4 HOH A 40 740 131 HOH HOH . 
G 4 HOH A 41 741 165 HOH HOH . 
G 4 HOH A 42 742 44 HOH HOH . 
G 4 HOH A 43 743 13 HOH HOH . 
G 4 HOH A 44 744 157 HOH HOH . 
G 4 HOH A 45 745 12 HOH HOH . 
G 4 HOH A 46 746 172 HOH HOH . 
G 4 HOH A 47 747 179 HOH HOH . 
G 4 HOH A 48 748 42 HOH HOH . 
G 4 HOH A 49 749 150 HOH HOH . 
G 4 HOH A 50 750 6 HOH HOH . 
G 4 HOH A 51 751 124 HOH HOH . 
G 4 HOH A 52 752 52 HOH HOH . 
G 4 HOH A 53 753 129 HOH HOH . 
G 4 HOH A 54 754 32 HOH HOH . 
G 4 HOH A 55 755 111 HOH HOH . 
G 4 HOH A 56 756 2 HOH HOH . 
G 4 HOH A 57 757 109 HOH HOH . 
G 4 HOH A 58 758 57 HOH HOH . 
G 4 HOH A 59 759 160 HOH HOH . 
G 4 HOH A 60 760 144 HOH HOH . 
G 4 HOH A 61 761 162 HOH HOH . 
G 4 HOH A 62 762 62 HOH HOH . 
G 4 HOH A 63 763 91 HOH HOH . 
G 4 HOH A 64 764 137 HOH HOH . 
G 4 HOH A 65 765 113 HOH HOH . 
G 4 HOH A 66 766 105 HOH HOH . 
G 4 HOH A 67 767 28 HOH HOH . 
G 4 HOH A 68 768 81 HOH HOH . 
G 4 HOH A 69 769 135 HOH HOH . 
G 4 HOH A 70 770 74 HOH HOH . 
G 4 HOH A 71 771 175 HOH HOH . 
G 4 HOH A 72 772 181 HOH HOH . 
G 4 HOH A 73 773 98 HOH HOH . 
G 4 HOH A 74 774 169 HOH HOH . 
G 4 HOH A 75 775 183 HOH HOH . 
G 4 HOH A 76 776 146 HOH HOH . 
G 4 HOH A 77 777 167 HOH HOH . 
G 4 HOH A 78 778 97 HOH HOH . 
G 4 HOH A 79 779 59 HOH HOH . 
G 4 HOH A 80 780 94 HOH HOH . 
G 4 HOH A 81 781 56 HOH HOH . 
G 4 HOH A 82 782 43 HOH HOH . 
G 4 HOH A 83 783 126 HOH HOH . 
G 4 HOH A 84 784 51 HOH HOH . 
G 4 HOH A 85 785 170 HOH HOH . 
G 4 HOH A 86 786 132 HOH HOH . 
G 4 HOH A 87 787 64 HOH HOH . 
G 4 HOH A 88 788 149 HOH HOH . 
G 4 HOH A 89 789 130 HOH HOH . 
G 4 HOH A 90 790 117 HOH HOH . 
G 4 HOH A 91 791 152 HOH HOH . 
G 4 HOH A 92 792 114 HOH HOH . 
H 4 HOH B 1 701 35 HOH HOH . 
H 4 HOH B 2 702 189 HOH HOH . 
H 4 HOH B 3 703 19 HOH HOH . 
H 4 HOH B 4 704 138 HOH HOH . 
H 4 HOH B 5 705 192 HOH HOH . 
H 4 HOH B 6 706 168 HOH HOH . 
H 4 HOH B 7 707 84 HOH HOH . 
H 4 HOH B 8 708 186 HOH HOH . 
H 4 HOH B 9 709 153 HOH HOH . 
H 4 HOH B 10 710 177 HOH HOH . 
H 4 HOH B 11 711 66 HOH HOH . 
H 4 HOH B 12 712 36 HOH HOH . 
H 4 HOH B 13 713 7 HOH HOH . 
H 4 HOH B 14 714 159 HOH HOH . 
H 4 HOH B 15 715 96 HOH HOH . 
H 4 HOH B 16 716 58 HOH HOH . 
H 4 HOH B 17 717 24 HOH HOH . 
H 4 HOH B 18 718 31 HOH HOH . 
H 4 HOH B 19 719 10 HOH HOH . 
H 4 HOH B 20 720 14 HOH HOH . 
H 4 HOH B 21 721 173 HOH HOH . 
H 4 HOH B 22 722 120 HOH HOH . 
H 4 HOH B 23 723 69 HOH HOH . 
H 4 HOH B 24 724 49 HOH HOH . 
H 4 HOH B 25 725 148 HOH HOH . 
H 4 HOH B 26 726 106 HOH HOH . 
H 4 HOH B 27 727 115 HOH HOH . 
H 4 HOH B 28 728 41 HOH HOH . 
H 4 HOH B 29 729 53 HOH HOH . 
H 4 HOH B 30 730 70 HOH HOH . 
H 4 HOH B 31 731 100 HOH HOH . 
H 4 HOH B 32 732 136 HOH HOH . 
H 4 HOH B 33 733 55 HOH HOH . 
H 4 HOH B 34 734 11 HOH HOH . 
H 4 HOH B 35 735 16 HOH HOH . 
H 4 HOH B 36 736 23 HOH HOH . 
H 4 HOH B 37 737 68 HOH HOH . 
H 4 HOH B 38 738 4 HOH HOH . 
H 4 HOH B 39 739 108 HOH HOH . 
H 4 HOH B 40 740 67 HOH HOH . 
H 4 HOH B 41 741 123 HOH HOH . 
H 4 HOH B 42 742 17 HOH HOH . 
H 4 HOH B 43 743 5 HOH HOH . 
H 4 HOH B 44 744 174 HOH HOH . 
H 4 HOH B 45 745 33 HOH HOH . 
H 4 HOH B 46 746 30 HOH HOH . 
H 4 HOH B 47 747 3 HOH HOH . 
H 4 HOH B 48 748 50 HOH HOH . 
H 4 HOH B 49 749 47 HOH HOH . 
H 4 HOH B 50 750 34 HOH HOH . 
H 4 HOH B 51 751 80 HOH HOH . 
H 4 HOH B 52 752 89 HOH HOH . 
H 4 HOH B 53 753 83 HOH HOH . 
H 4 HOH B 54 754 88 HOH HOH . 
H 4 HOH B 55 755 72 HOH HOH . 
H 4 HOH B 56 756 79 HOH HOH . 
H 4 HOH B 57 757 171 HOH HOH . 
H 4 HOH B 58 758 164 HOH HOH . 
H 4 HOH B 59 759 54 HOH HOH . 
H 4 HOH B 60 760 139 HOH HOH . 
H 4 HOH B 61 761 26 HOH HOH . 
H 4 HOH B 62 762 48 HOH HOH . 
H 4 HOH B 63 763 140 HOH HOH . 
H 4 HOH B 64 764 60 HOH HOH . 
H 4 HOH B 65 765 176 HOH HOH . 
H 4 HOH B 66 766 20 HOH HOH . 
H 4 HOH B 67 767 87 HOH HOH . 
H 4 HOH B 68 768 63 HOH HOH . 
H 4 HOH B 69 769 119 HOH HOH . 
H 4 HOH B 70 770 29 HOH HOH . 
H 4 HOH B 71 771 166 HOH HOH . 
H 4 HOH B 72 772 77 HOH HOH . 
H 4 HOH B 73 773 92 HOH HOH . 
H 4 HOH B 74 774 107 HOH HOH . 
H 4 HOH B 75 775 194 HOH HOH . 
H 4 HOH B 76 776 142 HOH HOH . 
H 4 HOH B 77 777 86 HOH HOH . 
H 4 HOH B 78 778 191 HOH HOH . 
H 4 HOH B 79 779 101 HOH HOH . 
H 4 HOH B 80 780 184 HOH HOH . 
H 4 HOH B 81 781 127 HOH HOH . 
H 4 HOH B 82 782 99 HOH HOH . 
H 4 HOH B 83 783 118 HOH HOH . 
H 4 HOH B 84 784 151 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 FOM . . . D 3 12.31 -2.155 18.827 1 58.09 ? O2 FOM 602 A 1 
HETATM 2 N N1 FOM . . . D 3 11.073 -2.825 18.905 1 65.16 ? N1 FOM 602 A 1 
HETATM 3 C C1 FOM . . . D 3 9.974 -2.211 19.064 1 57.33 ? C1 FOM 602 A 1 
HETATM 4 O O1 FOM . . . D 3 10.004 -0.991 19.173 1 50.97 ? O1 FOM 602 A 1 
HETATM 5 C C2 FOM . . . D 3 11.053 -4.273 18.837 1 63.24 ? C2 FOM 602 A 1 
HETATM 6 C C3 FOM . . . D 3 11.337 -4.671 20.299 1 58.98 ? C3 FOM 602 A 1 
HETATM 7 C C4 FOM . . . D 3 11.611 -6.164 20.312 1 53.33 ? C4 FOM 602 A 1 
HETATM 8 P PA1 FOM . . . D 3 12.502 -6.576 21.796 1 47.58 ? PA1 FOM 602 A 1 
HETATM 9 O OP1 FOM . . . D 3 12.866 -8.16 21.729 1 45.59 ? OP1 FOM 602 A 1 
HETATM 10 O OP2 FOM . . . D 3 11.686 -6.239 22.962 1 51.4 ? OP2 FOM 602 A 1 
HETATM 11 O OP3 FOM . . . D 3 13.771 -5.635 21.935 1 44.82 ? OP3 FOM 602 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#