data_4ZQG
#
_model_server_result.job_id            b8mLgeRcWCwmM5eTxwppyg 
_model_server_result.datetime_utc      '2024-11-15 04:21:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zqg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    4ZQG 
#
_exptl.entry_id    4ZQG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              183.1 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4ZQG 
_cell.length_a            65.719 
_cell.length_b            65.719 
_cell.length_c            390.106 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZQG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 154 A ASP 153 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 A OE1 GLU 156 A GLU 155 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? 
metalc ? metalc3 A OE2 GLU 156 A GLU 155 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc4 A OE2 GLU 235 A GLU 234 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc5 D MG MG . A MG 502 1_555 E O2 FOM . A FOM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc6 D MG MG . A MG 502 1_555 E O1 FOM . A FOM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc7 B OD1 ASP 154 B ASP 153 1_555 I MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc8 B OE1 GLU 156 B GLU 155 1_555 I MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc9 B OE2 GLU 156 B GLU 155 1_555 I MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc10 B OE2 GLU 235 B GLU 234 1_555 I MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc11 I MG MG . B MG 502 1_555 J O1 FOM . B FOM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc12 I MG MG . B MG 502 1_555 J O2 FOM . B FOM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
#
_chem_comp.formula           'C4 H10 N O5 P' 
_chem_comp.formula_weight    183.1 
_chem_comp.id                FOM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     FOSMIDOMYCIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 N1 FOM sing 83 n n 
O2 HO2 FOM sing 84 n n 
N1 C1 FOM sing 85 n n 
N1 C2 FOM sing 86 n n 
C1 O1 FOM doub 87 n n 
C1 H1 FOM sing 88 n n 
C2 C3 FOM sing 89 n n 
C2 H21 FOM sing 90 n n 
C2 H22 FOM sing 91 n n 
C3 C4 FOM sing 92 n n 
C3 H31 FOM sing 93 n n 
C3 H32 FOM sing 94 n n 
C4 PA1 FOM sing 95 n n 
C4 H41 FOM sing 96 n n 
C4 H42 FOM sing 97 n n 
PA1 OP1 FOM doub 98 n n 
PA1 OP2 FOM sing 99 n n 
PA1 OP3 FOM sing 100 n n 
OP2 HP2 FOM sing 101 n n 
OP3 HP3 FOM sing 102 n n 
#
_atom_sites.entry_id                     4ZQG 
_atom_sites.fract_transf_matrix[1][1]    0.015216 
_atom_sites.fract_transf_matrix[1][2]    0.008785 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002563 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 501 501 NAD NAD . 
D 3 MG A 1 502 601 MG MG . 
E 4 FOM A 1 503 701 FOM FOM . 
F 5 GOL A 1 504 801 GOL GOL . 
G 6 NHE A 1 505 901 NHE NHE . 
H 2 NAD B 1 501 501 NAD NAD . 
I 3 MG B 1 502 601 MG MG . 
J 4 FOM B 1 503 701 FOM FOM . 
K 5 GOL B 1 504 801 GOL GOL . 
L 6 NHE B 1 505 901 NHE NHE . 
M 7 HOH A 1 601 72 HOH HOH . 
M 7 HOH A 2 602 5 HOH HOH . 
M 7 HOH A 3 603 62 HOH HOH . 
M 7 HOH A 4 604 97 HOH HOH . 
M 7 HOH A 5 605 31 HOH HOH . 
M 7 HOH A 6 606 55 HOH HOH . 
M 7 HOH A 7 607 18 HOH HOH . 
M 7 HOH A 8 608 26 HOH HOH . 
M 7 HOH A 9 609 69 HOH HOH . 
M 7 HOH A 10 610 99 HOH HOH . 
M 7 HOH A 11 611 103 HOH HOH . 
M 7 HOH A 12 612 21 HOH HOH . 
M 7 HOH A 13 613 159 HOH HOH . 
M 7 HOH A 14 614 25 HOH HOH . 
M 7 HOH A 15 615 163 HOH HOH . 
M 7 HOH A 16 616 76 HOH HOH . 
M 7 HOH A 17 617 109 HOH HOH . 
M 7 HOH A 18 618 90 HOH HOH . 
M 7 HOH A 19 619 16 HOH HOH . 
M 7 HOH A 20 620 129 HOH HOH . 
M 7 HOH A 21 621 37 HOH HOH . 
M 7 HOH A 22 622 78 HOH HOH . 
M 7 HOH A 23 623 153 HOH HOH . 
M 7 HOH A 24 624 66 HOH HOH . 
M 7 HOH A 25 625 96 HOH HOH . 
M 7 HOH A 26 626 104 HOH HOH . 
M 7 HOH A 27 627 132 HOH HOH . 
M 7 HOH A 28 628 22 HOH HOH . 
M 7 HOH A 29 629 83 HOH HOH . 
M 7 HOH A 30 630 131 HOH HOH . 
M 7 HOH A 31 631 23 HOH HOH . 
M 7 HOH A 32 632 14 HOH HOH . 
M 7 HOH A 33 633 13 HOH HOH . 
M 7 HOH A 34 634 68 HOH HOH . 
M 7 HOH A 35 635 118 HOH HOH . 
M 7 HOH A 36 636 106 HOH HOH . 
M 7 HOH A 37 637 133 HOH HOH . 
M 7 HOH A 38 638 8 HOH HOH . 
M 7 HOH A 39 639 87 HOH HOH . 
M 7 HOH A 40 640 136 HOH HOH . 
M 7 HOH A 41 641 128 HOH HOH . 
M 7 HOH A 42 642 155 HOH HOH . 
M 7 HOH A 43 643 154 HOH HOH . 
M 7 HOH A 44 644 138 HOH HOH . 
M 7 HOH A 45 645 144 HOH HOH . 
M 7 HOH A 46 646 34 HOH HOH . 
M 7 HOH A 47 647 48 HOH HOH . 
M 7 HOH A 48 648 134 HOH HOH . 
M 7 HOH A 49 649 147 HOH HOH . 
M 7 HOH A 50 650 150 HOH HOH . 
M 7 HOH A 51 651 61 HOH HOH . 
M 7 HOH A 52 652 10 HOH HOH . 
M 7 HOH A 53 653 130 HOH HOH . 
M 7 HOH A 54 654 84 HOH HOH . 
M 7 HOH A 55 655 161 HOH HOH . 
M 7 HOH A 56 656 35 HOH HOH . 
M 7 HOH A 57 657 44 HOH HOH . 
M 7 HOH A 58 658 73 HOH HOH . 
M 7 HOH A 59 659 86 HOH HOH . 
M 7 HOH A 60 660 56 HOH HOH . 
M 7 HOH A 61 661 40 HOH HOH . 
M 7 HOH A 62 662 100 HOH HOH . 
M 7 HOH A 63 663 75 HOH HOH . 
M 7 HOH A 64 664 38 HOH HOH . 
M 7 HOH A 65 665 148 HOH HOH . 
M 7 HOH A 66 666 46 HOH HOH . 
M 7 HOH A 67 667 125 HOH HOH . 
M 7 HOH A 68 668 139 HOH HOH . 
M 7 HOH A 69 669 60 HOH HOH . 
M 7 HOH A 70 670 145 HOH HOH . 
M 7 HOH A 71 671 120 HOH HOH . 
M 7 HOH A 72 672 158 HOH HOH . 
M 7 HOH A 73 673 149 HOH HOH . 
M 7 HOH A 74 674 166 HOH HOH . 
M 7 HOH A 75 675 77 HOH HOH . 
M 7 HOH A 76 676 116 HOH HOH . 
M 7 HOH A 77 677 142 HOH HOH . 
N 7 HOH B 1 601 59 HOH HOH . 
N 7 HOH B 2 602 6 HOH HOH . 
N 7 HOH B 3 603 117 HOH HOH . 
N 7 HOH B 4 604 143 HOH HOH . 
N 7 HOH B 5 605 141 HOH HOH . 
N 7 HOH B 6 606 29 HOH HOH . 
N 7 HOH B 7 607 152 HOH HOH . 
N 7 HOH B 8 608 79 HOH HOH . 
N 7 HOH B 9 609 80 HOH HOH . 
N 7 HOH B 10 610 19 HOH HOH . 
N 7 HOH B 11 611 89 HOH HOH . 
N 7 HOH B 12 612 135 HOH HOH . 
N 7 HOH B 13 613 36 HOH HOH . 
N 7 HOH B 14 614 85 HOH HOH . 
N 7 HOH B 15 615 92 HOH HOH . 
N 7 HOH B 16 616 102 HOH HOH . 
N 7 HOH B 17 617 27 HOH HOH . 
N 7 HOH B 18 618 98 HOH HOH . 
N 7 HOH B 19 619 91 HOH HOH . 
N 7 HOH B 20 620 20 HOH HOH . 
N 7 HOH B 21 621 151 HOH HOH . 
N 7 HOH B 22 622 123 HOH HOH . 
N 7 HOH B 23 623 28 HOH HOH . 
N 7 HOH B 24 624 121 HOH HOH . 
N 7 HOH B 25 625 4 HOH HOH . 
N 7 HOH B 26 626 70 HOH HOH . 
N 7 HOH B 27 627 112 HOH HOH . 
N 7 HOH B 28 628 71 HOH HOH . 
N 7 HOH B 29 629 94 HOH HOH . 
N 7 HOH B 30 630 17 HOH HOH . 
N 7 HOH B 31 631 74 HOH HOH . 
N 7 HOH B 32 632 32 HOH HOH . 
N 7 HOH B 33 633 82 HOH HOH . 
N 7 HOH B 34 634 114 HOH HOH . 
N 7 HOH B 35 635 156 HOH HOH . 
N 7 HOH B 36 636 162 HOH HOH . 
N 7 HOH B 37 637 113 HOH HOH . 
N 7 HOH B 38 638 9 HOH HOH . 
N 7 HOH B 39 639 15 HOH HOH . 
N 7 HOH B 40 640 33 HOH HOH . 
N 7 HOH B 41 641 122 HOH HOH . 
N 7 HOH B 42 642 45 HOH HOH . 
N 7 HOH B 43 643 110 HOH HOH . 
N 7 HOH B 44 644 126 HOH HOH . 
N 7 HOH B 45 645 88 HOH HOH . 
N 7 HOH B 46 646 3 HOH HOH . 
N 7 HOH B 47 647 65 HOH HOH . 
N 7 HOH B 48 648 101 HOH HOH . 
N 7 HOH B 49 649 81 HOH HOH . 
N 7 HOH B 50 650 107 HOH HOH . 
N 7 HOH B 51 651 43 HOH HOH . 
N 7 HOH B 52 652 115 HOH HOH . 
N 7 HOH B 53 653 51 HOH HOH . 
N 7 HOH B 54 654 58 HOH HOH . 
N 7 HOH B 55 655 64 HOH HOH . 
N 7 HOH B 56 656 127 HOH HOH . 
N 7 HOH B 57 657 41 HOH HOH . 
N 7 HOH B 58 658 165 HOH HOH . 
N 7 HOH B 59 659 42 HOH HOH . 
N 7 HOH B 60 660 49 HOH HOH . 
N 7 HOH B 61 661 119 HOH HOH . 
N 7 HOH B 62 662 146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 FOM . . . E 4 8.236 -9.047 -19.066 1 59.95 ? O2 FOM 503 A 1 
HETATM 2 N N1 FOM . . . E 4 7.971 -7.714 -18.831 1 59.4 ? N1 FOM 503 A 1 
HETATM 3 C C1 FOM . . . E 4 6.802 -7.235 -18.962 1 59.35 ? C1 FOM 503 A 1 
HETATM 4 O O1 FOM . . . E 4 5.874 -7.939 -19.324 1 58.2 ? O1 FOM 503 A 1 
HETATM 5 C C2 FOM . . . E 4 9.142 -6.911 -18.494 1 58.82 ? C2 FOM 503 A 1 
HETATM 6 C C3 FOM . . . E 4 9.94 -7.087 -19.787 1 58.85 ? C3 FOM 503 A 1 
HETATM 7 C C4 FOM . . . E 4 11.333 -6.535 -19.672 1 59.17 ? C4 FOM 503 A 1 
HETATM 8 P PA1 FOM . . . E 4 12.117 -6.972 -21.208 1 58.11 ? PA1 FOM 503 A 1 
HETATM 9 O OP1 FOM . . . E 4 11.354 -6.172 -22.357 1 65.68 ? OP1 FOM 503 A 1 
HETATM 10 O OP2 FOM . . . E 4 11.835 -8.373 -21.523 1 60.06 ? OP2 FOM 503 A 1 
HETATM 11 O OP3 FOM . . . E 4 13.719 -6.691 -21.266 1 57.3 ? OP3 FOM 503 A 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           11 
#