data_4ZQH # _model_server_result.job_id HXQB1VB9kFxNm7SSxWOKzQ _model_server_result.datetime_utc '2024-11-23 18:27:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":504}' # _entry.id 4ZQH # _exptl.entry_id 4ZQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 183.1 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZQH _cell.length_a 65.719 _cell.length_b 65.719 _cell.length_c 391.454 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 171 A ASP 153 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A OE2 GLU 173 A GLU 155 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 A OE2 GLU 252 A GLU 234 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 D MG MG . A MG 502 1_555 E O2 FOM . A FOM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc5 D MG MG . A MG 502 1_555 E O1 FOM . A FOM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 B OD1 ASP 171 B ASP 153 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 B OE2 GLU 173 B GLU 155 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc8 B OE2 GLU 252 B GLU 234 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc9 K MG MG . B MG 503 1_555 L O1 FOM . B FOM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc10 K MG MG . B MG 503 1_555 L O2 FOM . B FOM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'C4 H10 N O5 P' _chem_comp.formula_weight 183.1 _chem_comp.id FOM _chem_comp.mon_nstd_flag . _chem_comp.name '3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms FOSMIDOMYCIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 N1 FOM sing 83 n n O2 HO2 FOM sing 84 n n N1 C1 FOM sing 85 n n N1 C2 FOM sing 86 n n C1 O1 FOM doub 87 n n C1 H1 FOM sing 88 n n C2 C3 FOM sing 89 n n C2 H21 FOM sing 90 n n C2 H22 FOM sing 91 n n C3 C4 FOM sing 92 n n C3 H31 FOM sing 93 n n C3 H32 FOM sing 94 n n C4 PA1 FOM sing 95 n n C4 H41 FOM sing 96 n n C4 H42 FOM sing 97 n n PA1 OP1 FOM doub 98 n n PA1 OP2 FOM sing 99 n n PA1 OP3 FOM sing 100 n n OP2 HP2 FOM sing 101 n n OP3 HP3 FOM sing 102 n n # _atom_sites.entry_id 4ZQH _atom_sites.fract_transf_matrix[1][1] 0.015216 _atom_sites.fract_transf_matrix[1][2] 0.008785 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 501 NDP NDP . D 3 MG A 1 502 601 MG MG . E 4 FOM A 1 503 701 FOM FOM . F 5 GOL A 1 504 801 GOL GOL . G 6 NHE A 1 505 901 NHE NHE . H 5 GOL A 1 506 802 GOL GOL . I 5 GOL B 1 501 802 GOL GOL . J 2 NDP B 1 502 501 NDP NDP . K 3 MG B 1 503 601 MG MG . L 4 FOM B 1 504 701 FOM FOM . M 5 GOL B 1 505 801 GOL GOL . N 5 GOL B 1 506 803 GOL GOL . O 6 NHE B 1 507 901 NHE NHE . P 7 HOH A 1 601 185 HOH HOH . P 7 HOH A 2 602 5 HOH HOH . P 7 HOH A 3 603 169 HOH HOH . P 7 HOH A 4 604 54 HOH HOH . P 7 HOH A 5 605 7 HOH HOH . P 7 HOH A 6 606 178 HOH HOH . P 7 HOH A 7 607 158 HOH HOH . P 7 HOH A 8 608 17 HOH HOH . P 7 HOH A 9 609 55 HOH HOH . P 7 HOH A 10 610 73 HOH HOH . P 7 HOH A 11 611 8 HOH HOH . P 7 HOH A 12 612 97 HOH HOH . P 7 HOH A 13 613 69 HOH HOH . P 7 HOH A 14 614 20 HOH HOH . P 7 HOH A 15 615 82 HOH HOH . P 7 HOH A 16 616 57 HOH HOH . P 7 HOH A 17 617 1 HOH HOH . P 7 HOH A 18 618 51 HOH HOH . P 7 HOH A 19 619 125 HOH HOH . P 7 HOH A 20 620 142 HOH HOH . P 7 HOH A 21 621 37 HOH HOH . P 7 HOH A 22 622 6 HOH HOH . P 7 HOH A 23 623 19 HOH HOH . P 7 HOH A 24 624 41 HOH HOH . P 7 HOH A 25 625 32 HOH HOH . P 7 HOH A 26 626 128 HOH HOH . P 7 HOH A 27 627 28 HOH HOH . P 7 HOH A 28 628 150 HOH HOH . P 7 HOH A 29 629 46 HOH HOH . P 7 HOH A 30 630 29 HOH HOH . P 7 HOH A 31 631 67 HOH HOH . P 7 HOH A 32 632 103 HOH HOH . P 7 HOH A 33 633 40 HOH HOH . P 7 HOH A 34 634 94 HOH HOH . P 7 HOH A 35 635 22 HOH HOH . P 7 HOH A 36 636 58 HOH HOH . P 7 HOH A 37 637 39 HOH HOH . P 7 HOH A 38 638 60 HOH HOH . P 7 HOH A 39 639 49 HOH HOH . P 7 HOH A 40 640 71 HOH HOH . P 7 HOH A 41 641 92 HOH HOH . P 7 HOH A 42 642 109 HOH HOH . P 7 HOH A 43 643 96 HOH HOH . P 7 HOH A 44 644 95 HOH HOH . P 7 HOH A 45 645 122 HOH HOH . P 7 HOH A 46 646 50 HOH HOH . P 7 HOH A 47 647 23 HOH HOH . P 7 HOH A 48 648 25 HOH HOH . P 7 HOH A 49 649 13 HOH HOH . P 7 HOH A 50 650 34 HOH HOH . P 7 HOH A 51 651 168 HOH HOH . P 7 HOH A 52 652 180 HOH HOH . P 7 HOH A 53 653 78 HOH HOH . P 7 HOH A 54 654 170 HOH HOH . P 7 HOH A 55 655 86 HOH HOH . P 7 HOH A 56 656 2 HOH HOH . P 7 HOH A 57 657 162 HOH HOH . P 7 HOH A 58 658 117 HOH HOH . P 7 HOH A 59 659 130 HOH HOH . P 7 HOH A 60 660 62 HOH HOH . P 7 HOH A 61 661 143 HOH HOH . P 7 HOH A 62 662 44 HOH HOH . P 7 HOH A 63 663 115 HOH HOH . P 7 HOH A 64 664 91 HOH HOH . P 7 HOH A 65 665 36 HOH HOH . P 7 HOH A 66 666 63 HOH HOH . P 7 HOH A 67 667 155 HOH HOH . P 7 HOH A 68 668 68 HOH HOH . P 7 HOH A 69 669 153 HOH HOH . P 7 HOH A 70 670 77 HOH HOH . P 7 HOH A 71 671 172 HOH HOH . P 7 HOH A 72 672 45 HOH HOH . P 7 HOH A 73 673 152 HOH HOH . P 7 HOH A 74 674 38 HOH HOH . P 7 HOH A 75 675 126 HOH HOH . P 7 HOH A 76 676 165 HOH HOH . P 7 HOH A 77 677 79 HOH HOH . P 7 HOH A 78 678 101 HOH HOH . P 7 HOH A 79 679 166 HOH HOH . P 7 HOH A 80 680 127 HOH HOH . P 7 HOH A 81 681 167 HOH HOH . P 7 HOH A 82 682 135 HOH HOH . Q 7 HOH B 1 601 148 HOH HOH . Q 7 HOH B 2 602 33 HOH HOH . Q 7 HOH B 3 603 65 HOH HOH . Q 7 HOH B 4 604 140 HOH HOH . Q 7 HOH B 5 605 64 HOH HOH . Q 7 HOH B 6 606 66 HOH HOH . Q 7 HOH B 7 607 74 HOH HOH . Q 7 HOH B 8 608 90 HOH HOH . Q 7 HOH B 9 609 15 HOH HOH . Q 7 HOH B 10 610 14 HOH HOH . Q 7 HOH B 11 611 120 HOH HOH . Q 7 HOH B 12 612 18 HOH HOH . Q 7 HOH B 13 613 4 HOH HOH . Q 7 HOH B 14 614 30 HOH HOH . Q 7 HOH B 15 615 113 HOH HOH . Q 7 HOH B 16 616 26 HOH HOH . Q 7 HOH B 17 617 47 HOH HOH . Q 7 HOH B 18 618 98 HOH HOH . Q 7 HOH B 19 619 48 HOH HOH . Q 7 HOH B 20 620 112 HOH HOH . Q 7 HOH B 21 621 134 HOH HOH . Q 7 HOH B 22 622 93 HOH HOH . Q 7 HOH B 23 623 56 HOH HOH . Q 7 HOH B 24 624 102 HOH HOH . Q 7 HOH B 25 625 75 HOH HOH . Q 7 HOH B 26 626 139 HOH HOH . Q 7 HOH B 27 627 53 HOH HOH . Q 7 HOH B 28 628 61 HOH HOH . Q 7 HOH B 29 629 9 HOH HOH . Q 7 HOH B 30 630 10 HOH HOH . Q 7 HOH B 31 631 21 HOH HOH . Q 7 HOH B 32 632 107 HOH HOH . Q 7 HOH B 33 633 84 HOH HOH . Q 7 HOH B 34 634 43 HOH HOH . Q 7 HOH B 35 635 132 HOH HOH . Q 7 HOH B 36 636 131 HOH HOH . Q 7 HOH B 37 637 136 HOH HOH . Q 7 HOH B 38 638 111 HOH HOH . Q 7 HOH B 39 639 35 HOH HOH . Q 7 HOH B 40 640 118 HOH HOH . Q 7 HOH B 41 641 16 HOH HOH . Q 7 HOH B 42 642 156 HOH HOH . Q 7 HOH B 43 643 87 HOH HOH . Q 7 HOH B 44 644 161 HOH HOH . Q 7 HOH B 45 645 133 HOH HOH . Q 7 HOH B 46 646 27 HOH HOH . Q 7 HOH B 47 647 145 HOH HOH . Q 7 HOH B 48 648 3 HOH HOH . Q 7 HOH B 49 649 85 HOH HOH . Q 7 HOH B 50 650 114 HOH HOH . Q 7 HOH B 51 651 81 HOH HOH . Q 7 HOH B 52 652 160 HOH HOH . Q 7 HOH B 53 653 24 HOH HOH . Q 7 HOH B 54 654 59 HOH HOH . Q 7 HOH B 55 655 11 HOH HOH . Q 7 HOH B 56 656 88 HOH HOH . Q 7 HOH B 57 657 144 HOH HOH . Q 7 HOH B 58 658 116 HOH HOH . Q 7 HOH B 59 659 119 HOH HOH . Q 7 HOH B 60 660 182 HOH HOH . Q 7 HOH B 61 661 138 HOH HOH . Q 7 HOH B 62 662 163 HOH HOH . Q 7 HOH B 63 663 147 HOH HOH . Q 7 HOH B 64 664 89 HOH HOH . Q 7 HOH B 65 665 106 HOH HOH . Q 7 HOH B 66 666 154 HOH HOH . Q 7 HOH B 67 667 159 HOH HOH . Q 7 HOH B 68 668 104 HOH HOH . Q 7 HOH B 69 669 124 HOH HOH . Q 7 HOH B 70 670 72 HOH HOH . Q 7 HOH B 71 671 31 HOH HOH . Q 7 HOH B 72 672 52 HOH HOH . Q 7 HOH B 73 673 80 HOH HOH . Q 7 HOH B 74 674 184 HOH HOH . Q 7 HOH B 75 675 121 HOH HOH . Q 7 HOH B 76 676 157 HOH HOH . Q 7 HOH B 77 677 179 HOH HOH . Q 7 HOH B 78 678 110 HOH HOH . Q 7 HOH B 79 679 100 HOH HOH . Q 7 HOH B 80 680 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 FOM . . . L 4 8.205 9.036 -46.002 1 48.51 ? O2 FOM 504 B 1 HETATM 2 N N1 FOM . . . L 4 7.954 7.705 -46.281 1 48.94 ? N1 FOM 504 B 1 HETATM 3 C C1 FOM . . . L 4 6.771 7.261 -46.172 1 48.19 ? C1 FOM 504 B 1 HETATM 4 O O1 FOM . . . L 4 5.895 8.003 -45.743 1 46.04 ? O1 FOM 504 B 1 HETATM 5 C C2 FOM . . . L 4 9.092 6.849 -46.59 1 45.68 ? C2 FOM 504 B 1 HETATM 6 C C3 FOM . . . L 4 9.852 6.859 -45.266 1 47.75 ? C3 FOM 504 B 1 HETATM 7 C C4 FOM . . . L 4 11.335 6.578 -45.446 1 49.38 ? C4 FOM 504 B 1 HETATM 8 P PA1 FOM . . . L 4 12.212 6.948 -43.898 1 46.27 ? PA1 FOM 504 B 1 HETATM 9 O OP1 FOM . . . L 4 13.754 6.55 -44.089 1 42.59 ? OP1 FOM 504 B 1 HETATM 10 O OP2 FOM . . . L 4 11.726 6.145 -42.782 1 51.78 ? OP2 FOM 504 B 1 HETATM 11 O OP3 FOM . . . L 4 11.958 8.479 -43.502 1 41.06 ? OP3 FOM 504 B 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #