data_4ZQM # _model_server_result.job_id 4sViw86sGUKFDnvdFMgbeg _model_server_result.datetime_utc '2024-11-26 08:35:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4ZQM # _exptl.entry_id 4ZQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZQM _cell.length_a 88.154 _cell.length_b 88.154 _cell.length_c 85.512 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 4ZQM _atom_sites.fract_transf_matrix[1][1] 0.011344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XMP A 1 601 550 XMP XMP . C 3 NAD A 1 602 551 NAD NAD . D 4 HOH A 1 701 100 HOH HOH . D 4 HOH A 2 702 114 HOH HOH . D 4 HOH A 3 703 139 HOH HOH . D 4 HOH A 4 704 157 HOH HOH . D 4 HOH A 5 705 115 HOH HOH . D 4 HOH A 6 706 147 HOH HOH . D 4 HOH A 7 707 143 HOH HOH . D 4 HOH A 8 708 49 HOH HOH . D 4 HOH A 9 709 113 HOH HOH . D 4 HOH A 10 710 92 HOH HOH . D 4 HOH A 11 711 66 HOH HOH . D 4 HOH A 12 712 145 HOH HOH . D 4 HOH A 13 713 27 HOH HOH . D 4 HOH A 14 714 110 HOH HOH . D 4 HOH A 15 715 134 HOH HOH . D 4 HOH A 16 716 70 HOH HOH . D 4 HOH A 17 717 133 HOH HOH . D 4 HOH A 18 718 119 HOH HOH . D 4 HOH A 19 719 94 HOH HOH . D 4 HOH A 20 720 101 HOH HOH . D 4 HOH A 21 721 41 HOH HOH . D 4 HOH A 22 722 106 HOH HOH . D 4 HOH A 23 723 65 HOH HOH . D 4 HOH A 24 724 131 HOH HOH . D 4 HOH A 25 725 21 HOH HOH . D 4 HOH A 26 726 75 HOH HOH . D 4 HOH A 27 727 80 HOH HOH . D 4 HOH A 28 728 56 HOH HOH . D 4 HOH A 29 729 84 HOH HOH . D 4 HOH A 30 730 88 HOH HOH . D 4 HOH A 31 731 154 HOH HOH . D 4 HOH A 32 732 81 HOH HOH . D 4 HOH A 33 733 73 HOH HOH . D 4 HOH A 34 734 3 HOH HOH . D 4 HOH A 35 735 159 HOH HOH . D 4 HOH A 36 736 135 HOH HOH . D 4 HOH A 37 737 108 HOH HOH . D 4 HOH A 38 738 76 HOH HOH . D 4 HOH A 39 739 117 HOH HOH . D 4 HOH A 40 740 42 HOH HOH . D 4 HOH A 41 741 32 HOH HOH . D 4 HOH A 42 742 18 HOH HOH . D 4 HOH A 43 743 54 HOH HOH . D 4 HOH A 44 744 60 HOH HOH . D 4 HOH A 45 745 48 HOH HOH . D 4 HOH A 46 746 12 HOH HOH . D 4 HOH A 47 747 107 HOH HOH . D 4 HOH A 48 748 25 HOH HOH . D 4 HOH A 49 749 11 HOH HOH . D 4 HOH A 50 750 14 HOH HOH . D 4 HOH A 51 751 148 HOH HOH . D 4 HOH A 52 752 97 HOH HOH . D 4 HOH A 53 753 129 HOH HOH . D 4 HOH A 54 754 112 HOH HOH . D 4 HOH A 55 755 8 HOH HOH . D 4 HOH A 56 756 58 HOH HOH . D 4 HOH A 57 757 1 HOH HOH . D 4 HOH A 58 758 39 HOH HOH . D 4 HOH A 59 759 69 HOH HOH . D 4 HOH A 60 760 5 HOH HOH . D 4 HOH A 61 761 29 HOH HOH . D 4 HOH A 62 762 15 HOH HOH . D 4 HOH A 63 763 138 HOH HOH . D 4 HOH A 64 764 13 HOH HOH . D 4 HOH A 65 765 9 HOH HOH . D 4 HOH A 66 766 68 HOH HOH . D 4 HOH A 67 767 47 HOH HOH . D 4 HOH A 68 768 64 HOH HOH . D 4 HOH A 69 769 104 HOH HOH . D 4 HOH A 70 770 102 HOH HOH . D 4 HOH A 71 771 22 HOH HOH . D 4 HOH A 72 772 24 HOH HOH . D 4 HOH A 73 773 96 HOH HOH . D 4 HOH A 74 774 10 HOH HOH . D 4 HOH A 75 775 74 HOH HOH . D 4 HOH A 76 776 46 HOH HOH . D 4 HOH A 77 777 78 HOH HOH . D 4 HOH A 78 778 116 HOH HOH . D 4 HOH A 79 779 33 HOH HOH . D 4 HOH A 80 780 23 HOH HOH . D 4 HOH A 81 781 128 HOH HOH . D 4 HOH A 82 782 130 HOH HOH . D 4 HOH A 83 783 55 HOH HOH . D 4 HOH A 84 784 98 HOH HOH . D 4 HOH A 85 785 99 HOH HOH . D 4 HOH A 86 786 28 HOH HOH . D 4 HOH A 87 787 19 HOH HOH . D 4 HOH A 88 788 125 HOH HOH . D 4 HOH A 89 789 109 HOH HOH . D 4 HOH A 90 790 72 HOH HOH . D 4 HOH A 91 791 17 HOH HOH . D 4 HOH A 92 792 44 HOH HOH . D 4 HOH A 93 793 118 HOH HOH . D 4 HOH A 94 794 50 HOH HOH . D 4 HOH A 95 795 34 HOH HOH . D 4 HOH A 96 796 95 HOH HOH . D 4 HOH A 97 797 20 HOH HOH . D 4 HOH A 98 798 71 HOH HOH . D 4 HOH A 99 799 121 HOH HOH . D 4 HOH A 100 800 111 HOH HOH . D 4 HOH A 101 801 126 HOH HOH . D 4 HOH A 102 802 105 HOH HOH . D 4 HOH A 103 803 63 HOH HOH . D 4 HOH A 104 804 140 HOH HOH . D 4 HOH A 105 805 51 HOH HOH . D 4 HOH A 106 806 160 HOH HOH . D 4 HOH A 107 807 124 HOH HOH . D 4 HOH A 108 808 16 HOH HOH . D 4 HOH A 109 809 37 HOH HOH . D 4 HOH A 110 810 82 HOH HOH . D 4 HOH A 111 811 43 HOH HOH . D 4 HOH A 112 812 86 HOH HOH . D 4 HOH A 113 813 123 HOH HOH . D 4 HOH A 114 814 146 HOH HOH . D 4 HOH A 115 815 153 HOH HOH . D 4 HOH A 116 816 62 HOH HOH . D 4 HOH A 117 817 7 HOH HOH . D 4 HOH A 118 818 79 HOH HOH . D 4 HOH A 119 819 30 HOH HOH . D 4 HOH A 120 820 6 HOH HOH . D 4 HOH A 121 821 103 HOH HOH . D 4 HOH A 122 822 26 HOH HOH . D 4 HOH A 123 823 53 HOH HOH . D 4 HOH A 124 824 137 HOH HOH . D 4 HOH A 125 825 52 HOH HOH . D 4 HOH A 126 826 36 HOH HOH . D 4 HOH A 127 827 93 HOH HOH . D 4 HOH A 128 828 35 HOH HOH . D 4 HOH A 129 829 57 HOH HOH . D 4 HOH A 130 830 152 HOH HOH . D 4 HOH A 131 831 67 HOH HOH . D 4 HOH A 132 832 4 HOH HOH . D 4 HOH A 133 833 150 HOH HOH . D 4 HOH A 134 834 31 HOH HOH . D 4 HOH A 135 835 38 HOH HOH . D 4 HOH A 136 836 142 HOH HOH . D 4 HOH A 137 837 2 HOH HOH . D 4 HOH A 138 838 120 HOH HOH . D 4 HOH A 139 839 40 HOH HOH . D 4 HOH A 140 840 144 HOH HOH . D 4 HOH A 141 841 151 HOH HOH . D 4 HOH A 142 842 132 HOH HOH . D 4 HOH A 143 843 161 HOH HOH . D 4 HOH A 144 844 141 HOH HOH . D 4 HOH A 145 845 91 HOH HOH . D 4 HOH A 146 846 156 HOH HOH . D 4 HOH A 147 847 85 HOH HOH . D 4 HOH A 148 848 89 HOH HOH . D 4 HOH A 149 849 59 HOH HOH . D 4 HOH A 150 850 158 HOH HOH . D 4 HOH A 151 851 155 HOH HOH . D 4 HOH A 152 852 149 HOH HOH . D 4 HOH A 153 853 127 HOH HOH . D 4 HOH A 154 854 45 HOH HOH . D 4 HOH A 155 855 87 HOH HOH . D 4 HOH A 156 856 61 HOH HOH . D 4 HOH A 157 857 90 HOH HOH . D 4 HOH A 158 858 83 HOH HOH . D 4 HOH A 159 859 122 HOH HOH . D 4 HOH A 160 860 77 HOH HOH . D 4 HOH A 161 861 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 -34.997 2.877 1.923 1 34.83 ? PA NAD 602 A 1 HETATM 2 O O1A NAD . . . C 3 -34.992 1.553 2.631 1 34.24 ? O1A NAD 602 A 1 HETATM 3 O O2A NAD . . . C 3 -36.075 3.905 2.178 1 41.64 ? O2A NAD 602 A 1 HETATM 4 O O5B NAD . . . C 3 -34.869 2.6 0.339 1 31.17 ? O5B NAD 602 A 1 HETATM 5 C C5B NAD . . . C 3 -35.321 3.588 -0.577 1 30 ? C5B NAD 602 A 1 HETATM 6 C C4B NAD . . . C 3 -35.23 3.016 -1.98 1 28.15 ? C4B NAD 602 A 1 HETATM 7 O O4B NAD . . . C 3 -33.853 2.916 -2.357 1 28.42 ? O4B NAD 602 A 1 HETATM 8 C C3B NAD . . . C 3 -35.751 1.591 -2.073 1 29.1 ? C3B NAD 602 A 1 HETATM 9 O O3B NAD . . . C 3 -37.14 1.544 -2.393 1 32.26 ? O3B NAD 602 A 1 HETATM 10 C C2B NAD . . . C 3 -34.974 1.013 -3.226 1 29.82 ? C2B NAD 602 A 1 HETATM 11 O O2B NAD . . . C 3 -35.586 1.397 -4.467 1 33.87 ? O2B NAD 602 A 1 HETATM 12 C C1B NAD . . . C 3 -33.667 1.764 -3.168 1 26.32 ? C1B NAD 602 A 1 HETATM 13 N N9A NAD . . . C 3 -32.632 0.917 -2.544 1 26.2 ? N9A NAD 602 A 1 HETATM 14 C C8A NAD . . . C 3 -32.015 1.128 -1.37 1 24.63 ? C8A NAD 602 A 1 HETATM 15 N N7A NAD . . . C 3 -31.103 0.139 -1.154 1 24.06 ? N7A NAD 602 A 1 HETATM 16 C C5A NAD . . . C 3 -31.171 -0.723 -2.205 1 21.39 ? C5A NAD 602 A 1 HETATM 17 C C6A NAD . . . C 3 -30.491 -1.951 -2.608 1 24.76 ? C6A NAD 602 A 1 HETATM 18 N N6A NAD . . . C 3 -29.543 -2.516 -1.83 1 25.49 ? N6A NAD 602 A 1 HETATM 19 N N1A NAD . . . C 3 -30.87 -2.506 -3.778 1 21.03 ? N1A NAD 602 A 1 HETATM 20 C C2A NAD . . . C 3 -31.812 -1.964 -4.574 1 23.06 ? C2A NAD 602 A 1 HETATM 21 N N3A NAD . . . C 3 -32.467 -0.83 -4.265 1 24.24 ? N3A NAD 602 A 1 HETATM 22 C C4A NAD . . . C 3 -32.177 -0.192 -3.118 1 23.73 ? C4A NAD 602 A 1 HETATM 23 O O3 NAD . . . C 3 -33.682 3.707 2.337 1 33.69 ? O3 NAD 602 A 1 HETATM 24 P PN NAD . . . C 3 -32.123 3.549 1.978 1 27.31 ? PN NAD 602 A 1 HETATM 25 O O1N NAD . . . C 3 -31.544 2.357 2.685 1 34.37 ? O1N NAD 602 A 1 HETATM 26 O O2N NAD . . . C 3 -31.951 3.864 0.517 1 27.12 ? O2N NAD 602 A 1 HETATM 27 O O5D NAD . . . C 3 -31.695 4.852 2.822 1 28 ? O5D NAD 602 A 1 HETATM 28 C C5D NAD . . . C 3 -32.008 4.915 4.218 1 29.06 ? C5D NAD 602 A 1 HETATM 29 C C4D NAD . . . C 3 -31.208 6.035 4.875 1 31.3 ? C4D NAD 602 A 1 HETATM 30 O O4D NAD . . . C 3 -29.834 5.638 4.935 1 32.31 ? O4D NAD 602 A 1 HETATM 31 C C3D NAD . . . C 3 -31.259 7.322 4.058 1 28.17 ? C3D NAD 602 A 1 HETATM 32 O O3D NAD . . . C 3 -31.312 8.438 4.969 1 31.9 ? O3D NAD 602 A 1 HETATM 33 C C2D NAD . . . C 3 -29.946 7.37 3.307 1 33.81 ? C2D NAD 602 A 1 HETATM 34 O O2D NAD . . . C 3 -29.439 8.703 3.182 1 37.03 ? O2D NAD 602 A 1 HETATM 35 C C1D NAD . . . C 3 -29.021 6.537 4.173 1 34.01 ? C1D NAD 602 A 1 HETATM 36 N N1N NAD . . . C 3 -28.099 5.783 3.337 1 32.67 ? N1N NAD 602 A 1 HETATM 37 C C2N NAD . . . C 3 -28.049 4.457 3.469 1 34.31 ? C2N NAD 602 A 1 HETATM 38 C C3N NAD . . . C 3 -27.178 3.722 2.689 1 38.88 ? C3N NAD 602 A 1 HETATM 39 C C7N NAD . . . C 3 -27.14 2.236 2.835 1 51.46 ? C7N NAD 602 A 1 HETATM 40 O O7N NAD . . . C 3 -28.127 1.65 3.268 1 57.21 ? O7N NAD 602 A 1 HETATM 41 N N7N NAD . . . C 3 -26.034 1.592 2.475 1 54.4 ? N7N NAD 602 A 1 HETATM 42 C C4N NAD . . . C 3 -26.358 4.371 1.777 1 34.73 ? C4N NAD 602 A 1 HETATM 43 C C5N NAD . . . C 3 -26.441 5.746 1.66 1 35.61 ? C5N NAD 602 A 1 HETATM 44 C C6N NAD . . . C 3 -27.33 6.439 2.458 1 35.62 ? C6N NAD 602 A 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #