data_4ZQN # _model_server_result.job_id A3UYAyFr41FzxBSaydQVeQ _model_server_result.datetime_utc '2024-11-26 11:27:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4ZQN # _exptl.entry_id 4ZQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZQN _cell.length_a 87.937 _cell.length_b 87.937 _cell.length_c 84.758 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -87.937 -87.937 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -87.937 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -87.937 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 228 n n P O2P IMP sing 229 n n P O3P IMP sing 230 n n P O5' IMP sing 231 n n O2P HOP2 IMP sing 232 n n O3P HOP3 IMP sing 233 n n O5' C5' IMP sing 234 n n C5' C4' IMP sing 235 n n C5' "H5'1" IMP sing 236 n n C5' "H5'2" IMP sing 237 n n C4' O4' IMP sing 238 n n C4' C3' IMP sing 239 n n C4' H4' IMP sing 240 n n O4' C1' IMP sing 241 n n C3' O3' IMP sing 242 n n C3' C2' IMP sing 243 n n C3' H3' IMP sing 244 n n O3' HO3' IMP sing 245 n n C2' O2' IMP sing 246 n n C2' C1' IMP sing 247 n n C2' H2' IMP sing 248 n n O2' HO2' IMP sing 249 n n C1' N9 IMP sing 250 n n C1' H1' IMP sing 251 n n N9 C8 IMP sing 252 n y N9 C4 IMP sing 253 n y C8 N7 IMP doub 254 n y C8 H8 IMP sing 255 n n N7 C5 IMP sing 256 n y C5 C6 IMP sing 257 n n C5 C4 IMP doub 258 n y C6 O6 IMP doub 259 n n C6 N1 IMP sing 260 n n N1 C2 IMP sing 261 n n N1 HN1 IMP sing 262 n n C2 N3 IMP doub 263 n n C2 H2 IMP sing 264 n n N3 C4 IMP sing 265 n n # _atom_sites.entry_id 4ZQN _atom_sites.fract_transf_matrix[1][1] 0.011372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 601 550 IMP IMP . C 3 4QO A 1 602 551 4QO P41 . D 4 HOH A 1 701 108 HOH HOH . D 4 HOH A 2 702 73 HOH HOH . D 4 HOH A 3 703 102 HOH HOH . D 4 HOH A 4 704 44 HOH HOH . D 4 HOH A 5 705 109 HOH HOH . D 4 HOH A 6 706 113 HOH HOH . D 4 HOH A 7 707 97 HOH HOH . D 4 HOH A 8 708 82 HOH HOH . D 4 HOH A 9 709 100 HOH HOH . D 4 HOH A 10 710 105 HOH HOH . D 4 HOH A 11 711 45 HOH HOH . D 4 HOH A 12 712 23 HOH HOH . D 4 HOH A 13 713 31 HOH HOH . D 4 HOH A 14 714 8 HOH HOH . D 4 HOH A 15 715 3 HOH HOH . D 4 HOH A 16 716 42 HOH HOH . D 4 HOH A 17 717 37 HOH HOH . D 4 HOH A 18 718 60 HOH HOH . D 4 HOH A 19 719 20 HOH HOH . D 4 HOH A 20 720 77 HOH HOH . D 4 HOH A 21 721 50 HOH HOH . D 4 HOH A 22 722 32 HOH HOH . D 4 HOH A 23 723 35 HOH HOH . D 4 HOH A 24 724 21 HOH HOH . D 4 HOH A 25 725 39 HOH HOH . D 4 HOH A 26 726 103 HOH HOH . D 4 HOH A 27 727 66 HOH HOH . D 4 HOH A 28 728 7 HOH HOH . D 4 HOH A 29 729 107 HOH HOH . D 4 HOH A 30 730 15 HOH HOH . D 4 HOH A 31 731 64 HOH HOH . D 4 HOH A 32 732 71 HOH HOH . D 4 HOH A 33 733 54 HOH HOH . D 4 HOH A 34 734 110 HOH HOH . D 4 HOH A 35 735 48 HOH HOH . D 4 HOH A 36 736 69 HOH HOH . D 4 HOH A 37 737 99 HOH HOH . D 4 HOH A 38 738 63 HOH HOH . D 4 HOH A 39 739 67 HOH HOH . D 4 HOH A 40 740 61 HOH HOH . D 4 HOH A 41 741 13 HOH HOH . D 4 HOH A 42 742 117 HOH HOH . D 4 HOH A 43 743 9 HOH HOH . D 4 HOH A 44 744 55 HOH HOH . D 4 HOH A 45 745 104 HOH HOH . D 4 HOH A 46 746 49 HOH HOH . D 4 HOH A 47 747 4 HOH HOH . D 4 HOH A 48 748 30 HOH HOH . D 4 HOH A 49 749 51 HOH HOH . D 4 HOH A 50 750 12 HOH HOH . D 4 HOH A 51 751 68 HOH HOH . D 4 HOH A 52 752 38 HOH HOH . D 4 HOH A 53 753 84 HOH HOH . D 4 HOH A 54 754 14 HOH HOH . D 4 HOH A 55 755 47 HOH HOH . D 4 HOH A 56 756 6 HOH HOH . D 4 HOH A 57 757 75 HOH HOH . D 4 HOH A 58 758 40 HOH HOH . D 4 HOH A 59 759 118 HOH HOH . D 4 HOH A 60 760 33 HOH HOH . D 4 HOH A 61 761 83 HOH HOH . D 4 HOH A 62 762 116 HOH HOH . D 4 HOH A 63 763 11 HOH HOH . D 4 HOH A 64 764 78 HOH HOH . D 4 HOH A 65 765 2 HOH HOH . D 4 HOH A 66 766 29 HOH HOH . D 4 HOH A 67 767 80 HOH HOH . D 4 HOH A 68 768 106 HOH HOH . D 4 HOH A 69 769 17 HOH HOH . D 4 HOH A 70 770 19 HOH HOH . D 4 HOH A 71 771 70 HOH HOH . D 4 HOH A 72 772 34 HOH HOH . D 4 HOH A 73 773 41 HOH HOH . D 4 HOH A 74 774 86 HOH HOH . D 4 HOH A 75 775 25 HOH HOH . D 4 HOH A 76 776 53 HOH HOH . D 4 HOH A 77 777 16 HOH HOH . D 4 HOH A 78 778 59 HOH HOH . D 4 HOH A 79 779 10 HOH HOH . D 4 HOH A 80 780 65 HOH HOH . D 4 HOH A 81 781 22 HOH HOH . D 4 HOH A 82 782 28 HOH HOH . D 4 HOH A 83 783 89 HOH HOH . D 4 HOH A 84 784 115 HOH HOH . D 4 HOH A 85 785 57 HOH HOH . D 4 HOH A 86 786 18 HOH HOH . D 4 HOH A 87 787 98 HOH HOH . D 4 HOH A 88 788 96 HOH HOH . D 4 HOH A 89 789 92 HOH HOH . D 4 HOH A 90 790 112 HOH HOH . D 4 HOH A 91 791 36 HOH HOH . D 4 HOH A 92 792 81 HOH HOH . D 4 HOH A 93 793 58 HOH HOH . D 4 HOH A 94 794 1 HOH HOH . D 4 HOH A 95 795 5 HOH HOH . D 4 HOH A 96 796 27 HOH HOH . D 4 HOH A 97 797 91 HOH HOH . D 4 HOH A 98 798 76 HOH HOH . D 4 HOH A 99 799 56 HOH HOH . D 4 HOH A 100 800 72 HOH HOH . D 4 HOH A 101 801 111 HOH HOH . D 4 HOH A 102 802 52 HOH HOH . D 4 HOH A 103 803 85 HOH HOH . D 4 HOH A 104 804 90 HOH HOH . D 4 HOH A 105 805 24 HOH HOH . D 4 HOH A 106 806 43 HOH HOH . D 4 HOH A 107 807 101 HOH HOH . D 4 HOH A 108 808 95 HOH HOH . D 4 HOH A 109 809 88 HOH HOH . D 4 HOH A 110 810 87 HOH HOH . D 4 HOH A 111 811 46 HOH HOH . D 4 HOH A 112 812 114 HOH HOH . D 4 HOH A 113 813 26 HOH HOH . D 4 HOH A 114 814 74 HOH HOH . D 4 HOH A 115 815 94 HOH HOH . D 4 HOH A 116 816 93 HOH HOH . D 4 HOH A 117 817 79 HOH HOH . D 4 HOH A 118 818 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 -32.724 -24.659 6.38 1 34.06 ? P IMP 601 A 1 HETATM 2 O O1P IMP . . . B 2 -33.232 -25.89 5.658 1 32.91 ? O1P IMP 601 A 1 HETATM 3 O O2P IMP . . . B 2 -33.125 -24.496 7.83 1 33 ? O2P IMP 601 A 1 HETATM 4 O O3P IMP . . . B 2 -31.216 -24.623 6.287 1 34.49 ? O3P IMP 601 A 1 HETATM 5 O O5' IMP . . . B 2 -33.369 -23.439 5.593 1 34.28 ? O5' IMP 601 A 1 HETATM 6 C C5' IMP . . . B 2 -32.874 -22.126 5.742 1 29.48 ? C5' IMP 601 A 1 HETATM 7 C C4' IMP . . . B 2 -33.468 -21.238 4.68 1 36.01 ? C4' IMP 601 A 1 HETATM 8 O O4' IMP . . . B 2 -34.904 -21.13 4.846 1 37.02 ? O4' IMP 601 A 1 HETATM 9 C C3' IMP . . . B 2 -32.997 -19.795 4.676 1 36.24 ? C3' IMP 601 A 1 HETATM 10 O O3' IMP . . . B 2 -31.702 -19.657 4.108 1 34.91 ? O3' IMP 601 A 1 HETATM 11 C C2' IMP . . . B 2 -34.109 -19.082 3.901 1 37.48 ? C2' IMP 601 A 1 HETATM 12 O O2' IMP . . . B 2 -33.934 -19.231 2.497 1 36.87 ? O2' IMP 601 A 1 HETATM 13 C C1' IMP . . . B 2 -35.349 -19.894 4.31 1 37.34 ? C1' IMP 601 A 1 HETATM 14 N N9 IMP . . . B 2 -36.164 -19.229 5.337 1 38.56 ? N9 IMP 601 A 1 HETATM 15 C C8 IMP . . . B 2 -35.775 -18.569 6.473 1 40.15 ? C8 IMP 601 A 1 HETATM 16 N N7 IMP . . . B 2 -36.902 -18.181 7.126 1 40.63 ? N7 IMP 601 A 1 HETATM 17 C C5 IMP . . . B 2 -37.983 -18.604 6.438 1 40.79 ? C5 IMP 601 A 1 HETATM 18 C C6 IMP . . . B 2 -39.345 -18.49 6.675 1 40.2 ? C6 IMP 601 A 1 HETATM 19 O O6 IMP . . . B 2 -39.743 -18.283 7.825 1 38.81 ? O6 IMP 601 A 1 HETATM 20 N N1 IMP . . . B 2 -40.21 -19.044 5.761 1 40.57 ? N1 IMP 601 A 1 HETATM 21 C C2 IMP . . . B 2 -39.732 -19.706 4.654 1 42.26 ? C2 IMP 601 A 1 HETATM 22 N N3 IMP . . . B 2 -38.381 -19.828 4.429 1 42.26 ? N3 IMP 601 A 1 HETATM 23 C C4 IMP . . . B 2 -37.527 -19.278 5.32 1 40.6 ? C4 IMP 601 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #