data_4ZQO # _model_server_result.job_id RtDXsUcT6Bgme9u1sUnLsQ _model_server_result.datetime_utc '2024-11-30 02:06:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 4ZQO # _exptl.entry_id 4ZQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZQO _cell.length_a 88.252 _cell.length_b 88.252 _cell.length_c 84.268 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 214 A GLY 336 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc2 A O GLY 216 A GLY 338 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc3 A O CYS 219 A CYS 341 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc4 A O GLU 389 A GLU 511 1_555 D K K . A K 603 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc5 A O SER 390 A SER 512 1_555 D K K . A K 603 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc6 A O HIS 391 A HIS 513 1_555 D K K . A K 603 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.119 ? metalc ? metalc7 D K K . A K 603 1_555 G O HOH . A HOH 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.294 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4ZQO _atom_sites.fract_transf_matrix[1][1] 0.011331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 601 550 IMP IMP . C 3 Q67 A 1 602 551 Q67 Q67 . D 4 K A 1 603 552 K K . E 5 GOL A 1 604 553 GOL GOL . F 6 PGO A 1 605 554 PGO PGO . G 7 HOH A 1 701 174 HOH HOH . G 7 HOH A 2 702 135 HOH HOH . G 7 HOH A 3 703 156 HOH HOH . G 7 HOH A 4 704 92 HOH HOH . G 7 HOH A 5 705 90 HOH HOH . G 7 HOH A 6 706 68 HOH HOH . G 7 HOH A 7 707 50 HOH HOH . G 7 HOH A 8 708 72 HOH HOH . G 7 HOH A 9 709 69 HOH HOH . G 7 HOH A 10 710 78 HOH HOH . G 7 HOH A 11 711 120 HOH HOH . G 7 HOH A 12 712 116 HOH HOH . G 7 HOH A 13 713 65 HOH HOH . G 7 HOH A 14 714 104 HOH HOH . G 7 HOH A 15 715 155 HOH HOH . G 7 HOH A 16 716 32 HOH HOH . G 7 HOH A 17 717 79 HOH HOH . G 7 HOH A 18 718 30 HOH HOH . G 7 HOH A 19 719 140 HOH HOH . G 7 HOH A 20 720 122 HOH HOH . G 7 HOH A 21 721 128 HOH HOH . G 7 HOH A 22 722 21 HOH HOH . G 7 HOH A 23 723 12 HOH HOH . G 7 HOH A 24 724 129 HOH HOH . G 7 HOH A 25 725 75 HOH HOH . G 7 HOH A 26 726 184 HOH HOH . G 7 HOH A 27 727 43 HOH HOH . G 7 HOH A 28 728 4 HOH HOH . G 7 HOH A 29 729 118 HOH HOH . G 7 HOH A 30 730 81 HOH HOH . G 7 HOH A 31 731 70 HOH HOH . G 7 HOH A 32 732 37 HOH HOH . G 7 HOH A 33 733 101 HOH HOH . G 7 HOH A 34 734 141 HOH HOH . G 7 HOH A 35 735 16 HOH HOH . G 7 HOH A 36 736 183 HOH HOH . G 7 HOH A 37 737 59 HOH HOH . G 7 HOH A 38 738 107 HOH HOH . G 7 HOH A 39 739 83 HOH HOH . G 7 HOH A 40 740 33 HOH HOH . G 7 HOH A 41 741 25 HOH HOH . G 7 HOH A 42 742 117 HOH HOH . G 7 HOH A 43 743 171 HOH HOH . G 7 HOH A 44 744 91 HOH HOH . G 7 HOH A 45 745 102 HOH HOH . G 7 HOH A 46 746 142 HOH HOH . G 7 HOH A 47 747 34 HOH HOH . G 7 HOH A 48 748 9 HOH HOH . G 7 HOH A 49 749 22 HOH HOH . G 7 HOH A 50 750 56 HOH HOH . G 7 HOH A 51 751 130 HOH HOH . G 7 HOH A 52 752 161 HOH HOH . G 7 HOH A 53 753 126 HOH HOH . G 7 HOH A 54 754 77 HOH HOH . G 7 HOH A 55 755 17 HOH HOH . G 7 HOH A 56 756 73 HOH HOH . G 7 HOH A 57 757 39 HOH HOH . G 7 HOH A 58 758 10 HOH HOH . G 7 HOH A 59 759 159 HOH HOH . G 7 HOH A 60 760 188 HOH HOH . G 7 HOH A 61 761 13 HOH HOH . G 7 HOH A 62 762 27 HOH HOH . G 7 HOH A 63 763 31 HOH HOH . G 7 HOH A 64 764 42 HOH HOH . G 7 HOH A 65 765 111 HOH HOH . G 7 HOH A 66 766 60 HOH HOH . G 7 HOH A 67 767 67 HOH HOH . G 7 HOH A 68 768 182 HOH HOH . G 7 HOH A 69 769 76 HOH HOH . G 7 HOH A 70 770 106 HOH HOH . G 7 HOH A 71 771 6 HOH HOH . G 7 HOH A 72 772 145 HOH HOH . G 7 HOH A 73 773 93 HOH HOH . G 7 HOH A 74 774 166 HOH HOH . G 7 HOH A 75 775 138 HOH HOH . G 7 HOH A 76 776 46 HOH HOH . G 7 HOH A 77 777 132 HOH HOH . G 7 HOH A 78 778 36 HOH HOH . G 7 HOH A 79 779 127 HOH HOH . G 7 HOH A 80 780 66 HOH HOH . G 7 HOH A 81 781 14 HOH HOH . G 7 HOH A 82 782 147 HOH HOH . G 7 HOH A 83 783 80 HOH HOH . G 7 HOH A 84 784 54 HOH HOH . G 7 HOH A 85 785 55 HOH HOH . G 7 HOH A 86 786 29 HOH HOH . G 7 HOH A 87 787 113 HOH HOH . G 7 HOH A 88 788 136 HOH HOH . G 7 HOH A 89 789 24 HOH HOH . G 7 HOH A 90 790 84 HOH HOH . G 7 HOH A 91 791 115 HOH HOH . G 7 HOH A 92 792 163 HOH HOH . G 7 HOH A 93 793 20 HOH HOH . G 7 HOH A 94 794 88 HOH HOH . G 7 HOH A 95 795 38 HOH HOH . G 7 HOH A 96 796 58 HOH HOH . G 7 HOH A 97 797 5 HOH HOH . G 7 HOH A 98 798 18 HOH HOH . G 7 HOH A 99 799 96 HOH HOH . G 7 HOH A 100 800 167 HOH HOH . G 7 HOH A 101 801 48 HOH HOH . G 7 HOH A 102 802 131 HOH HOH . G 7 HOH A 103 803 15 HOH HOH . G 7 HOH A 104 804 7 HOH HOH . G 7 HOH A 105 805 133 HOH HOH . G 7 HOH A 106 806 103 HOH HOH . G 7 HOH A 107 807 98 HOH HOH . G 7 HOH A 108 808 82 HOH HOH . G 7 HOH A 109 809 51 HOH HOH . G 7 HOH A 110 810 52 HOH HOH . G 7 HOH A 111 811 3 HOH HOH . G 7 HOH A 112 812 28 HOH HOH . G 7 HOH A 113 813 172 HOH HOH . G 7 HOH A 114 814 168 HOH HOH . G 7 HOH A 115 815 100 HOH HOH . G 7 HOH A 116 816 105 HOH HOH . G 7 HOH A 117 817 40 HOH HOH . G 7 HOH A 118 818 137 HOH HOH . G 7 HOH A 119 819 47 HOH HOH . G 7 HOH A 120 820 57 HOH HOH . G 7 HOH A 121 821 53 HOH HOH . G 7 HOH A 122 822 62 HOH HOH . G 7 HOH A 123 823 87 HOH HOH . G 7 HOH A 124 824 109 HOH HOH . G 7 HOH A 125 825 112 HOH HOH . G 7 HOH A 126 826 63 HOH HOH . G 7 HOH A 127 827 26 HOH HOH . G 7 HOH A 128 828 41 HOH HOH . G 7 HOH A 129 829 19 HOH HOH . G 7 HOH A 130 830 44 HOH HOH . G 7 HOH A 131 831 157 HOH HOH . G 7 HOH A 132 832 61 HOH HOH . G 7 HOH A 133 833 110 HOH HOH . G 7 HOH A 134 834 158 HOH HOH . G 7 HOH A 135 835 146 HOH HOH . G 7 HOH A 136 836 71 HOH HOH . G 7 HOH A 137 837 177 HOH HOH . G 7 HOH A 138 838 99 HOH HOH . G 7 HOH A 139 839 23 HOH HOH . G 7 HOH A 140 840 186 HOH HOH . G 7 HOH A 141 841 125 HOH HOH . G 7 HOH A 142 842 74 HOH HOH . G 7 HOH A 143 843 45 HOH HOH . G 7 HOH A 144 844 124 HOH HOH . G 7 HOH A 145 845 8 HOH HOH . G 7 HOH A 146 846 180 HOH HOH . G 7 HOH A 147 847 2 HOH HOH . G 7 HOH A 148 848 11 HOH HOH . G 7 HOH A 149 849 35 HOH HOH . G 7 HOH A 150 850 160 HOH HOH . G 7 HOH A 151 851 179 HOH HOH . G 7 HOH A 152 852 108 HOH HOH . G 7 HOH A 153 853 114 HOH HOH . G 7 HOH A 154 854 164 HOH HOH . G 7 HOH A 155 855 1 HOH HOH . G 7 HOH A 156 856 162 HOH HOH . G 7 HOH A 157 857 176 HOH HOH . G 7 HOH A 158 858 94 HOH HOH . G 7 HOH A 159 859 185 HOH HOH . G 7 HOH A 160 860 165 HOH HOH . G 7 HOH A 161 861 139 HOH HOH . G 7 HOH A 162 862 119 HOH HOH . G 7 HOH A 163 863 85 HOH HOH . G 7 HOH A 164 864 64 HOH HOH . G 7 HOH A 165 865 49 HOH HOH . G 7 HOH A 166 866 178 HOH HOH . G 7 HOH A 167 867 173 HOH HOH . G 7 HOH A 168 868 169 HOH HOH . G 7 HOH A 169 869 143 HOH HOH . G 7 HOH A 170 870 148 HOH HOH . G 7 HOH A 171 871 151 HOH HOH . G 7 HOH A 172 872 170 HOH HOH . G 7 HOH A 173 873 152 HOH HOH . G 7 HOH A 174 874 149 HOH HOH . G 7 HOH A 175 875 153 HOH HOH . G 7 HOH A 176 876 121 HOH HOH . G 7 HOH A 177 877 175 HOH HOH . G 7 HOH A 178 878 154 HOH HOH . G 7 HOH A 179 879 150 HOH HOH . G 7 HOH A 180 880 134 HOH HOH . G 7 HOH A 181 881 144 HOH HOH . G 7 HOH A 182 882 97 HOH HOH . G 7 HOH A 183 883 123 HOH HOH . G 7 HOH A 184 884 181 HOH HOH . G 7 HOH A 185 885 95 HOH HOH . G 7 HOH A 186 886 187 HOH HOH . G 7 HOH A 187 887 89 HOH HOH . G 7 HOH A 188 888 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 10.109 10.015 -5.574 1 42.06 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . E 5 10.26 8.677 -6.018 1 39.78 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . E 5 9.166 10.057 -4.376 1 41.99 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . E 5 7.829 10.028 -4.828 1 43.18 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . E 5 9.423 11.295 -3.519 1 43.2 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . E 5 8.919 12.453 -4.158 1 42.37 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #