data_4ZQP # _model_server_result.job_id v5Wdng0ZEfqS0UmYzVeCxg _model_server_result.datetime_utc '2024-10-10 17:12:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4ZQP # _exptl.entry_id 4ZQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZQP _cell.length_a 88.225 _cell.length_b 88.225 _cell.length_c 84.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -88.225 -88.225 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -88.225 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -88.225 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 214 A GLY 336 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc2 A O GLY 216 A GLY 338 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc3 A O CYS 219 A CYS 341 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc4 A O GLU 389 A GLU 511 1_555 D K K . A K 603 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc5 A O SER 390 A SER 512 1_555 D K K . A K 603 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc6 A O HIS 391 A HIS 513 1_555 D K K . A K 603 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc7 D K K . A K 603 1_555 H O HOH . A HOH 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.235 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 186 n n P O2P IMP sing 187 n n P O3P IMP sing 188 n n P O5' IMP sing 189 n n O2P HOP2 IMP sing 190 n n O3P HOP3 IMP sing 191 n n O5' C5' IMP sing 192 n n C5' C4' IMP sing 193 n n C5' "H5'1" IMP sing 194 n n C5' "H5'2" IMP sing 195 n n C4' O4' IMP sing 196 n n C4' C3' IMP sing 197 n n C4' H4' IMP sing 198 n n O4' C1' IMP sing 199 n n C3' O3' IMP sing 200 n n C3' C2' IMP sing 201 n n C3' H3' IMP sing 202 n n O3' HO3' IMP sing 203 n n C2' O2' IMP sing 204 n n C2' C1' IMP sing 205 n n C2' H2' IMP sing 206 n n O2' HO2' IMP sing 207 n n C1' N9 IMP sing 208 n n C1' H1' IMP sing 209 n n N9 C8 IMP sing 210 n y N9 C4 IMP sing 211 n y C8 N7 IMP doub 212 n y C8 H8 IMP sing 213 n n N7 C5 IMP sing 214 n y C5 C6 IMP sing 215 n n C5 C4 IMP doub 216 n y C6 O6 IMP doub 217 n n C6 N1 IMP sing 218 n n N1 C2 IMP sing 219 n n N1 HN1 IMP sing 220 n n C2 N3 IMP doub 221 n n C2 H2 IMP sing 222 n n N3 C4 IMP sing 223 n n # _atom_sites.entry_id 4ZQP _atom_sites.fract_transf_matrix[1][1] 0.011335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 601 550 IMP IMP . C 3 KP3 A 1 602 551 KP3 KP3 . D 4 K A 1 603 552 K K . E 5 PO4 A 1 604 553 PO4 PO4 . F 6 GOL A 1 605 554 GOL GOL . G 7 PGO A 1 606 555 PGO PGO . H 8 HOH A 1 701 24 HOH HOH . H 8 HOH A 2 702 112 HOH HOH . H 8 HOH A 3 703 102 HOH HOH . H 8 HOH A 4 704 62 HOH HOH . H 8 HOH A 5 705 33 HOH HOH . H 8 HOH A 6 706 129 HOH HOH . H 8 HOH A 7 707 156 HOH HOH . H 8 HOH A 8 708 94 HOH HOH . H 8 HOH A 9 709 158 HOH HOH . H 8 HOH A 10 710 85 HOH HOH . H 8 HOH A 11 711 121 HOH HOH . H 8 HOH A 12 712 73 HOH HOH . H 8 HOH A 13 713 113 HOH HOH . H 8 HOH A 14 714 120 HOH HOH . H 8 HOH A 15 715 104 HOH HOH . H 8 HOH A 16 716 165 HOH HOH . H 8 HOH A 17 717 29 HOH HOH . H 8 HOH A 18 718 67 HOH HOH . H 8 HOH A 19 719 48 HOH HOH . H 8 HOH A 20 720 56 HOH HOH . H 8 HOH A 21 721 7 HOH HOH . H 8 HOH A 22 722 108 HOH HOH . H 8 HOH A 23 723 79 HOH HOH . H 8 HOH A 24 724 80 HOH HOH . H 8 HOH A 25 725 58 HOH HOH . H 8 HOH A 26 726 144 HOH HOH . H 8 HOH A 27 727 49 HOH HOH . H 8 HOH A 28 728 82 HOH HOH . H 8 HOH A 29 729 10 HOH HOH . H 8 HOH A 30 730 6 HOH HOH . H 8 HOH A 31 731 34 HOH HOH . H 8 HOH A 32 732 131 HOH HOH . H 8 HOH A 33 733 11 HOH HOH . H 8 HOH A 34 734 69 HOH HOH . H 8 HOH A 35 735 1 HOH HOH . H 8 HOH A 36 736 88 HOH HOH . H 8 HOH A 37 737 54 HOH HOH . H 8 HOH A 38 738 72 HOH HOH . H 8 HOH A 39 739 35 HOH HOH . H 8 HOH A 40 740 152 HOH HOH . H 8 HOH A 41 741 96 HOH HOH . H 8 HOH A 42 742 41 HOH HOH . H 8 HOH A 43 743 53 HOH HOH . H 8 HOH A 44 744 16 HOH HOH . H 8 HOH A 45 745 151 HOH HOH . H 8 HOH A 46 746 42 HOH HOH . H 8 HOH A 47 747 128 HOH HOH . H 8 HOH A 48 748 95 HOH HOH . H 8 HOH A 49 749 99 HOH HOH . H 8 HOH A 50 750 25 HOH HOH . H 8 HOH A 51 751 77 HOH HOH . H 8 HOH A 52 752 27 HOH HOH . H 8 HOH A 53 753 71 HOH HOH . H 8 HOH A 54 754 37 HOH HOH . H 8 HOH A 55 755 26 HOH HOH . H 8 HOH A 56 756 55 HOH HOH . H 8 HOH A 57 757 45 HOH HOH . H 8 HOH A 58 758 5 HOH HOH . H 8 HOH A 59 759 106 HOH HOH . H 8 HOH A 60 760 39 HOH HOH . H 8 HOH A 61 761 68 HOH HOH . H 8 HOH A 62 762 59 HOH HOH . H 8 HOH A 63 763 43 HOH HOH . H 8 HOH A 64 764 132 HOH HOH . H 8 HOH A 65 765 137 HOH HOH . H 8 HOH A 66 766 17 HOH HOH . H 8 HOH A 67 767 18 HOH HOH . H 8 HOH A 68 768 61 HOH HOH . H 8 HOH A 69 769 22 HOH HOH . H 8 HOH A 70 770 84 HOH HOH . H 8 HOH A 71 771 75 HOH HOH . H 8 HOH A 72 772 36 HOH HOH . H 8 HOH A 73 773 133 HOH HOH . H 8 HOH A 74 774 47 HOH HOH . H 8 HOH A 75 775 3 HOH HOH . H 8 HOH A 76 776 100 HOH HOH . H 8 HOH A 77 777 19 HOH HOH . H 8 HOH A 78 778 117 HOH HOH . H 8 HOH A 79 779 97 HOH HOH . H 8 HOH A 80 780 63 HOH HOH . H 8 HOH A 81 781 31 HOH HOH . H 8 HOH A 82 782 78 HOH HOH . H 8 HOH A 83 783 12 HOH HOH . H 8 HOH A 84 784 124 HOH HOH . H 8 HOH A 85 785 141 HOH HOH . H 8 HOH A 86 786 125 HOH HOH . H 8 HOH A 87 787 169 HOH HOH . H 8 HOH A 88 788 2 HOH HOH . H 8 HOH A 89 789 122 HOH HOH . H 8 HOH A 90 790 162 HOH HOH . H 8 HOH A 91 791 28 HOH HOH . H 8 HOH A 92 792 50 HOH HOH . H 8 HOH A 93 793 15 HOH HOH . H 8 HOH A 94 794 149 HOH HOH . H 8 HOH A 95 795 64 HOH HOH . H 8 HOH A 96 796 52 HOH HOH . H 8 HOH A 97 797 38 HOH HOH . H 8 HOH A 98 798 138 HOH HOH . H 8 HOH A 99 799 14 HOH HOH . H 8 HOH A 100 800 98 HOH HOH . H 8 HOH A 101 801 92 HOH HOH . H 8 HOH A 102 802 145 HOH HOH . H 8 HOH A 103 803 8 HOH HOH . H 8 HOH A 104 804 23 HOH HOH . H 8 HOH A 105 805 114 HOH HOH . H 8 HOH A 106 806 81 HOH HOH . H 8 HOH A 107 807 46 HOH HOH . H 8 HOH A 108 808 130 HOH HOH . H 8 HOH A 109 809 139 HOH HOH . H 8 HOH A 110 810 164 HOH HOH . H 8 HOH A 111 811 89 HOH HOH . H 8 HOH A 112 812 30 HOH HOH . H 8 HOH A 113 813 66 HOH HOH . H 8 HOH A 114 814 160 HOH HOH . H 8 HOH A 115 815 116 HOH HOH . H 8 HOH A 116 816 51 HOH HOH . H 8 HOH A 117 817 20 HOH HOH . H 8 HOH A 118 818 166 HOH HOH . H 8 HOH A 119 819 134 HOH HOH . H 8 HOH A 120 820 70 HOH HOH . H 8 HOH A 121 821 83 HOH HOH . H 8 HOH A 122 822 167 HOH HOH . H 8 HOH A 123 823 159 HOH HOH . H 8 HOH A 124 824 107 HOH HOH . H 8 HOH A 125 825 126 HOH HOH . H 8 HOH A 126 826 60 HOH HOH . H 8 HOH A 127 827 127 HOH HOH . H 8 HOH A 128 828 57 HOH HOH . H 8 HOH A 129 829 154 HOH HOH . H 8 HOH A 130 830 32 HOH HOH . H 8 HOH A 131 831 140 HOH HOH . H 8 HOH A 132 832 21 HOH HOH . H 8 HOH A 133 833 150 HOH HOH . H 8 HOH A 134 834 155 HOH HOH . H 8 HOH A 135 835 9 HOH HOH . H 8 HOH A 136 836 101 HOH HOH . H 8 HOH A 137 837 13 HOH HOH . H 8 HOH A 138 838 111 HOH HOH . H 8 HOH A 139 839 74 HOH HOH . H 8 HOH A 140 840 146 HOH HOH . H 8 HOH A 141 841 65 HOH HOH . H 8 HOH A 142 842 103 HOH HOH . H 8 HOH A 143 843 44 HOH HOH . H 8 HOH A 144 844 161 HOH HOH . H 8 HOH A 145 845 40 HOH HOH . H 8 HOH A 146 846 4 HOH HOH . H 8 HOH A 147 847 76 HOH HOH . H 8 HOH A 148 848 135 HOH HOH . H 8 HOH A 149 849 136 HOH HOH . H 8 HOH A 150 850 115 HOH HOH . H 8 HOH A 151 851 157 HOH HOH . H 8 HOH A 152 852 110 HOH HOH . H 8 HOH A 153 853 163 HOH HOH . H 8 HOH A 154 854 123 HOH HOH . H 8 HOH A 155 855 118 HOH HOH . H 8 HOH A 156 856 153 HOH HOH . H 8 HOH A 157 857 105 HOH HOH . H 8 HOH A 158 858 148 HOH HOH . H 8 HOH A 159 859 91 HOH HOH . H 8 HOH A 160 860 119 HOH HOH . H 8 HOH A 161 861 86 HOH HOH . H 8 HOH A 162 862 168 HOH HOH . H 8 HOH A 163 863 147 HOH HOH . H 8 HOH A 164 864 90 HOH HOH . H 8 HOH A 165 865 93 HOH HOH . H 8 HOH A 166 866 109 HOH HOH . H 8 HOH A 167 867 143 HOH HOH . H 8 HOH A 168 868 87 HOH HOH . H 8 HOH A 169 869 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 -32.745 -24.636 6.637 1 17.52 ? P IMP 601 A 1 HETATM 2 O O1P IMP . . . B 2 -33.422 -25.867 6.084 1 15.35 ? O1P IMP 601 A 1 HETATM 3 O O2P IMP . . . B 2 -33.069 -24.484 8.084 1 18.37 ? O2P IMP 601 A 1 HETATM 4 O O3P IMP . . . B 2 -31.265 -24.706 6.302 1 17.54 ? O3P IMP 601 A 1 HETATM 5 O O5' IMP . . . B 2 -33.401 -23.44 5.821 1 16.06 ? O5' IMP 601 A 1 HETATM 6 C C5' IMP . . . B 2 -32.964 -22.096 5.985 1 15.41 ? C5' IMP 601 A 1 HETATM 7 C C4' IMP . . . B 2 -33.637 -21.216 4.956 1 18.3 ? C4' IMP 601 A 1 HETATM 8 O O4' IMP . . . B 2 -35.064 -21.121 5.211 1 17.26 ? O4' IMP 601 A 1 HETATM 9 C C3' IMP . . . B 2 -33.192 -19.771 4.93 1 16.47 ? C3' IMP 601 A 1 HETATM 10 O O3' IMP . . . B 2 -31.904 -19.599 4.347 1 16.52 ? O3' IMP 601 A 1 HETATM 11 C C2' IMP . . . B 2 -34.345 -19.076 4.188 1 15.36 ? C2' IMP 601 A 1 HETATM 12 O O2' IMP . . . B 2 -34.253 -19.252 2.776 1 18.23 ? O2' IMP 601 A 1 HETATM 13 C C1' IMP . . . B 2 -35.555 -19.891 4.671 1 14.38 ? C1' IMP 601 A 1 HETATM 14 N N9 IMP . . . B 2 -36.327 -19.186 5.719 1 17.19 ? N9 IMP 601 A 1 HETATM 15 C C8 IMP . . . B 2 -35.902 -18.417 6.779 1 19.31 ? C8 IMP 601 A 1 HETATM 16 N N7 IMP . . . B 2 -37.003 -18.036 7.498 1 21.13 ? N7 IMP 601 A 1 HETATM 17 C C5 IMP . . . B 2 -38.103 -18.559 6.913 1 18.08 ? C5 IMP 601 A 1 HETATM 18 C C6 IMP . . . B 2 -39.468 -18.518 7.211 1 19.84 ? C6 IMP 601 A 1 HETATM 19 O O6 IMP . . . B 2 -39.938 -18.129 8.289 1 19.72 ? O6 IMP 601 A 1 HETATM 20 N N1 IMP . . . B 2 -40.33 -19.188 6.401 1 23.57 ? N1 IMP 601 A 1 HETATM 21 C C2 IMP . . . B 2 -39.838 -19.836 5.319 1 27.19 ? C2 IMP 601 A 1 HETATM 22 N N3 IMP . . . B 2 -38.513 -19.95 5.003 1 24.26 ? N3 IMP 601 A 1 HETATM 23 C C4 IMP . . . B 2 -37.664 -19.282 5.807 1 21.33 ? C4 IMP 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #