data_4ZR1 # _model_server_result.job_id gm0YTfOMWDKnw2hKGxdGJw _model_server_result.datetime_utc '2024-11-14 05:36:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":406}' # _entry.id 4ZR1 # _exptl.entry_id 4ZR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.361 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIDECANE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZR1 _cell.length_a 202.762 _cell.length_b 202.762 _cell.length_c 202.762 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L 1 1 B,M,N,O,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 150 A HIS 244 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 A NE2 HIS 155 A HIS 249 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 A NE2 HIS 174 A HIS 268 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc4 A NE2 HIS 177 A HIS 271 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 A NE2 HIS 178 A HIS 272 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 A NE2 HIS 232 A HIS 326 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 A NE2 HIS 236 A HIS 330 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc8 A NE2 HIS 251 A HIS 345 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc9 A NE2 HIS 254 A HIS 348 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc10 A NE2 HIS 255 A HIS 349 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc11 B NE2 HIS 150 B HIS 244 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc12 B NE2 HIS 155 B HIS 249 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 B NE2 HIS 174 B HIS 268 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc14 B NE2 HIS 177 B HIS 271 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc15 B NE2 HIS 178 B HIS 272 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc16 B NE2 HIS 232 B HIS 326 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc17 B NE2 HIS 236 B HIS 330 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc18 B NE2 HIS 251 B HIS 345 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc19 B NE2 HIS 254 B HIS 348 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc20 B NE2 HIS 255 B HIS 349 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C13 H28' _chem_comp.formula_weight 184.361 _chem_comp.id TRD _chem_comp.mon_nstd_flag . _chem_comp.name TRIDECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TRD sing 352 n n C1 H11 TRD sing 353 n n C1 H12 TRD sing 354 n n C1 H13 TRD sing 355 n n C2 C3 TRD sing 356 n n C2 H21 TRD sing 357 n n C2 H22 TRD sing 358 n n C3 C4 TRD sing 359 n n C3 H31 TRD sing 360 n n C3 H32 TRD sing 361 n n C4 C5 TRD sing 362 n n C4 H41 TRD sing 363 n n C4 H42 TRD sing 364 n n C5 C6 TRD sing 365 n n C5 H51 TRD sing 366 n n C5 H52 TRD sing 367 n n C6 C7 TRD sing 368 n n C6 H61 TRD sing 369 n n C6 H62 TRD sing 370 n n C7 C8 TRD sing 371 n n C7 H71 TRD sing 372 n n C7 H72 TRD sing 373 n n C8 C9 TRD sing 374 n n C8 H81 TRD sing 375 n n C8 H82 TRD sing 376 n n C9 C10 TRD sing 377 n n C9 H91 TRD sing 378 n n C9 H92 TRD sing 379 n n C10 C11 TRD sing 380 n n C10 H101 TRD sing 381 n n C10 H102 TRD sing 382 n n C11 C12 TRD sing 383 n n C11 H111 TRD sing 384 n n C11 H112 TRD sing 385 n n C12 C13 TRD sing 386 n n C12 H121 TRD sing 387 n n C12 H122 TRD sing 388 n n C13 H131 TRD sing 389 n n C13 H132 TRD sing 390 n n C13 H133 TRD sing 391 n n # _atom_sites.entry_id 4ZR1 _atom_sites.fract_transf_matrix[1][1] 0.004932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 2 ZN A 1 402 402 ZN ZN . E 3 BOG A 1 403 601 BOG BOG . F 3 BOG A 1 404 603 BOG BOG . G 3 BOG A 1 405 604 BOG BOG . H 3 BOG A 1 406 605 BOG BOG . I 3 BOG A 1 407 606 BOG BOG . J 3 BOG A 1 408 607 BOG BOG . K 4 TRD A 1 409 611 TRD TRD . L 4 TRD A 1 410 618 TRD TRD . M 2 ZN B 1 401 401 ZN ZN . N 2 ZN B 1 402 402 ZN ZN . O 3 BOG B 1 403 602 BOG BOG . P 3 BOG B 1 404 608 BOG BOG . Q 4 TRD B 1 405 612 TRD TRD . R 4 TRD B 1 406 613 TRD TRD . S 4 TRD B 1 407 614 TRD TRD . T 4 TRD B 1 408 615 TRD TRD . U 4 TRD B 1 409 616 TRD TRD . V 4 TRD B 1 410 617 TRD TRD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TRD . . . R 4 64.514 73.223 126.121 1 61.99 ? C1 TRD 406 B 1 HETATM 2 C C2 TRD . . . R 4 65.828 73.177 126.878 1 65.72 ? C2 TRD 406 B 1 HETATM 3 C C3 TRD . . . R 4 65.729 72.403 128.182 1 78.4 ? C3 TRD 406 B 1 HETATM 4 C C4 TRD . . . R 4 65.919 70.913 127.956 1 83.13 ? C4 TRD 406 B 1 HETATM 5 C C5 TRD . . . R 4 66.924 70.415 128.979 1 93.69 ? C5 TRD 406 B 1 HETATM 6 C C6 TRD . . . R 4 66.407 69.191 129.704 1 81.08 ? C6 TRD 406 B 1 HETATM 7 C C7 TRD . . . R 4 67.342 68.821 130.836 1 74.39 ? C7 TRD 406 B 1 HETATM 8 C C8 TRD . . . R 4 67.021 67.397 131.257 1 89.11 ? C8 TRD 406 B 1 HETATM 9 C C9 TRD . . . R 4 68.217 66.487 131.059 1 84.77 ? C9 TRD 406 B 1 HETATM 10 C C10 TRD . . . R 4 67.802 65.156 130.456 1 73.54 ? C10 TRD 406 B 1 HETATM 11 C C11 TRD . . . R 4 67.422 64.189 131.554 1 69.93 ? C11 TRD 406 B 1 HETATM 12 C C12 TRD . . . R 4 67.308 62.784 131.001 1 75.73 ? C12 TRD 406 B 1 HETATM 13 C C13 TRD . . . R 4 66.447 61.967 131.942 1 78.28 ? C13 TRD 406 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #