data_4ZR1
#
_model_server_result.job_id            gFl-9Nx2Mb8rNs3PrLFzZg 
_model_server_result.datetime_utc      '2024-11-14 05:25:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zr1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":409}' 
#
_entry.id    4ZR1 
#
_exptl.entry_id    4ZR1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              184.361 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRIDECANE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZR1 
_cell.length_a            202.762 
_cell.length_b            202.762 
_cell.length_c            202.762 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZR1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L 1 1 
B,M,N,O,P,Q,R,S,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 L N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 150 A HIS 244 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc2 A NE2 HIS 155 A HIS 249 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc3 A NE2 HIS 174 A HIS 268 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc4 A NE2 HIS 177 A HIS 271 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc5 A NE2 HIS 178 A HIS 272 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc6 A NE2 HIS 232 A HIS 326 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc7 A NE2 HIS 236 A HIS 330 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc8 A NE2 HIS 251 A HIS 345 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc9 A NE2 HIS 254 A HIS 348 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc10 A NE2 HIS 255 A HIS 349 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc11 B NE2 HIS 150 B HIS 244 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc12 B NE2 HIS 155 B HIS 249 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc13 B NE2 HIS 174 B HIS 268 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc14 B NE2 HIS 177 B HIS 271 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc15 B NE2 HIS 178 B HIS 272 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc16 B NE2 HIS 232 B HIS 326 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc17 B NE2 HIS 236 B HIS 330 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc18 B NE2 HIS 251 B HIS 345 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc19 B NE2 HIS 254 B HIS 348 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc20 B NE2 HIS 255 B HIS 349 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
#
_chem_comp.formula           'C13 H28' 
_chem_comp.formula_weight    184.361 
_chem_comp.id                TRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRIDECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 TRD sing 352 n n 
C1 H11 TRD sing 353 n n 
C1 H12 TRD sing 354 n n 
C1 H13 TRD sing 355 n n 
C2 C3 TRD sing 356 n n 
C2 H21 TRD sing 357 n n 
C2 H22 TRD sing 358 n n 
C3 C4 TRD sing 359 n n 
C3 H31 TRD sing 360 n n 
C3 H32 TRD sing 361 n n 
C4 C5 TRD sing 362 n n 
C4 H41 TRD sing 363 n n 
C4 H42 TRD sing 364 n n 
C5 C6 TRD sing 365 n n 
C5 H51 TRD sing 366 n n 
C5 H52 TRD sing 367 n n 
C6 C7 TRD sing 368 n n 
C6 H61 TRD sing 369 n n 
C6 H62 TRD sing 370 n n 
C7 C8 TRD sing 371 n n 
C7 H71 TRD sing 372 n n 
C7 H72 TRD sing 373 n n 
C8 C9 TRD sing 374 n n 
C8 H81 TRD sing 375 n n 
C8 H82 TRD sing 376 n n 
C9 C10 TRD sing 377 n n 
C9 H91 TRD sing 378 n n 
C9 H92 TRD sing 379 n n 
C10 C11 TRD sing 380 n n 
C10 H101 TRD sing 381 n n 
C10 H102 TRD sing 382 n n 
C11 C12 TRD sing 383 n n 
C11 H111 TRD sing 384 n n 
C11 H112 TRD sing 385 n n 
C12 C13 TRD sing 386 n n 
C12 H121 TRD sing 387 n n 
C12 H122 TRD sing 388 n n 
C13 H131 TRD sing 389 n n 
C13 H132 TRD sing 390 n n 
C13 H133 TRD sing 391 n n 
#
_atom_sites.entry_id                     4ZR1 
_atom_sites.fract_transf_matrix[1][1]    0.004932 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 401 ZN ZN . 
D 2 ZN A 1 402 402 ZN ZN . 
E 3 BOG A 1 403 601 BOG BOG . 
F 3 BOG A 1 404 603 BOG BOG . 
G 3 BOG A 1 405 604 BOG BOG . 
H 3 BOG A 1 406 605 BOG BOG . 
I 3 BOG A 1 407 606 BOG BOG . 
J 3 BOG A 1 408 607 BOG BOG . 
K 4 TRD A 1 409 611 TRD TRD . 
L 4 TRD A 1 410 618 TRD TRD . 
M 2 ZN B 1 401 401 ZN ZN . 
N 2 ZN B 1 402 402 ZN ZN . 
O 3 BOG B 1 403 602 BOG BOG . 
P 3 BOG B 1 404 608 BOG BOG . 
Q 4 TRD B 1 405 612 TRD TRD . 
R 4 TRD B 1 406 613 TRD TRD . 
S 4 TRD B 1 407 614 TRD TRD . 
T 4 TRD B 1 408 615 TRD TRD . 
U 4 TRD B 1 409 616 TRD TRD . 
V 4 TRD B 1 410 617 TRD TRD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TRD . . . K 4 81.598 51.345 129.822 1 62.08 ? C1 TRD 409 A 1 
HETATM 2 C C2 TRD . . . K 4 82.583 52.431 130.239 1 64.62 ? C2 TRD 409 A 1 
HETATM 3 C C3 TRD . . . K 4 83.487 52.774 129.064 1 72.58 ? C3 TRD 409 A 1 
HETATM 4 C C4 TRD . . . K 4 84.734 53.525 129.499 1 73 ? C4 TRD 409 A 1 
HETATM 5 C C5 TRD . . . K 4 85.518 53.985 128.28 1 69.39 ? C5 TRD 409 A 1 
HETATM 6 C C6 TRD . . . K 4 86.631 54.919 128.708 1 73.96 ? C6 TRD 409 A 1 
HETATM 7 C C7 TRD . . . K 4 87.964 54.192 128.729 1 77.93 ? C7 TRD 409 A 1 
HETATM 8 C C8 TRD . . . K 4 88.968 54.876 129.649 1 84.6 ? C8 TRD 409 A 1 
HETATM 9 C C9 TRD . . . K 4 90.39 54.606 129.172 1 84.33 ? C9 TRD 409 A 1 
HETATM 10 C C10 TRD . . . K 4 91.451 55.104 130.138 1 79.76 ? C10 TRD 409 A 1 
HETATM 11 C C11 TRD . . . K 4 92.841 54.893 129.562 1 81.99 ? C11 TRD 409 A 1 
HETATM 12 C C12 TRD . . . K 4 93.903 55.456 130.496 1 82.28 ? C12 TRD 409 A 1 
HETATM 13 C C13 TRD . . . K 4 95.309 55.376 129.91 1 67.64 ? C13 TRD 409 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#