data_4ZR2 # _model_server_result.job_id -HiqAEW3MLhJcrSNZ1K6kQ _model_server_result.datetime_utc '2025-08-28 18:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4ZR2 # _exptl.entry_id 4ZR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZR2 _cell.length_a 62.768 _cell.length_b 109.225 _cell.length_c 36.389 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.262 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 266 n n C1 C6 RET sing 267 n n C1 C16 RET sing 268 n n C1 C17 RET sing 269 n n C2 C3 RET sing 270 n n C2 H21 RET sing 271 n n C2 H22 RET sing 272 n n C3 C4 RET sing 273 n n C3 H31 RET sing 274 n n C3 H32 RET sing 275 n n C4 C5 RET sing 276 n n C4 H41 RET sing 277 n n C4 H42 RET sing 278 n n C5 C6 RET doub 279 n n C5 C18 RET sing 280 n n C6 C7 RET sing 281 n n C7 C8 RET doub 282 e n C7 H7 RET sing 283 n n C8 C9 RET sing 284 n n C8 H8 RET sing 285 n n C9 C10 RET doub 286 e n C9 C19 RET sing 287 n n C10 C11 RET sing 288 n n C10 H10 RET sing 289 n n C11 C12 RET doub 290 e n C11 H11 RET sing 291 n n C12 C13 RET sing 292 n n C12 H12 RET sing 293 n n C13 C14 RET doub 294 e n C13 C20 RET sing 295 n n C14 C15 RET sing 296 n n C14 H14 RET sing 297 n n C15 O1 RET doub 298 n n C15 H15 RET sing 299 n n C16 H161 RET sing 300 n n C16 H162 RET sing 301 n n C16 H163 RET sing 302 n n C17 H171 RET sing 303 n n C17 H172 RET sing 304 n n C17 H173 RET sing 305 n n C18 H181 RET sing 306 n n C18 H182 RET sing 307 n n C18 H183 RET sing 308 n n C19 H191 RET sing 309 n n C19 H192 RET sing 310 n n C19 H193 RET sing 311 n n C20 H201 RET sing 312 n n C20 H202 RET sing 313 n n C20 H203 RET sing 314 n n # _atom_sites.entry_id 4ZR2 _atom_sites.fract_transf_matrix[1][1] 0.015932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 201 1 RET RET . D 3 ACT A 1 202 1 ACT ACT . E 3 ACT A 1 203 2 ACT ACT . F 3 ACT B 1 201 3 ACT ACT . G 3 ACT B 1 202 4 ACT ACT . H 3 ACT B 1 203 5 ACT ACT . I 4 HOH A 1 301 47 HOH HOH . I 4 HOH A 2 302 154 HOH HOH . I 4 HOH A 3 303 194 HOH HOH . I 4 HOH A 4 304 93 HOH HOH . I 4 HOH A 5 305 33 HOH HOH . I 4 HOH A 6 306 230 HOH HOH . I 4 HOH A 7 307 347 HOH HOH . I 4 HOH A 8 308 8 HOH HOH . I 4 HOH A 9 309 337 HOH HOH . I 4 HOH A 10 310 152 HOH HOH . I 4 HOH A 11 311 169 HOH HOH . I 4 HOH A 12 312 19 HOH HOH . I 4 HOH A 13 313 150 HOH HOH . I 4 HOH A 14 314 158 HOH HOH . I 4 HOH A 15 315 31 HOH HOH . I 4 HOH A 16 316 54 HOH HOH . I 4 HOH A 17 317 55 HOH HOH . I 4 HOH A 18 318 234 HOH HOH . I 4 HOH A 19 319 87 HOH HOH . I 4 HOH A 20 320 11 HOH HOH . I 4 HOH A 21 321 131 HOH HOH . I 4 HOH A 22 322 36 HOH HOH . I 4 HOH A 23 323 28 HOH HOH . I 4 HOH A 24 324 38 HOH HOH . I 4 HOH A 25 325 95 HOH HOH . I 4 HOH A 26 326 198 HOH HOH . I 4 HOH A 27 327 84 HOH HOH . I 4 HOH A 28 328 196 HOH HOH . I 4 HOH A 29 329 105 HOH HOH . I 4 HOH A 30 330 101 HOH HOH . I 4 HOH A 31 331 250 HOH HOH . I 4 HOH A 32 332 25 HOH HOH . I 4 HOH A 33 333 113 HOH HOH . I 4 HOH A 34 334 63 HOH HOH . I 4 HOH A 35 335 90 HOH HOH . I 4 HOH A 36 336 352 HOH HOH . I 4 HOH A 37 337 111 HOH HOH . I 4 HOH A 38 338 30 HOH HOH . I 4 HOH A 39 339 20 HOH HOH . I 4 HOH A 40 340 46 HOH HOH . I 4 HOH A 41 341 22 HOH HOH . I 4 HOH A 42 342 2 HOH HOH . I 4 HOH A 43 343 37 HOH HOH . I 4 HOH A 44 344 130 HOH HOH . I 4 HOH A 45 345 118 HOH HOH . I 4 HOH A 46 346 12 HOH HOH . I 4 HOH A 47 347 62 HOH HOH . I 4 HOH A 48 348 48 HOH HOH . I 4 HOH A 49 349 252 HOH HOH . I 4 HOH A 50 350 257 HOH HOH . I 4 HOH A 51 351 80 HOH HOH . I 4 HOH A 52 352 182 HOH HOH . I 4 HOH A 53 353 1 HOH HOH . I 4 HOH A 54 354 64 HOH HOH . I 4 HOH A 55 355 14 HOH HOH . I 4 HOH A 56 356 145 HOH HOH . I 4 HOH A 57 357 23 HOH HOH . I 4 HOH A 58 358 15 HOH HOH . I 4 HOH A 59 359 68 HOH HOH . I 4 HOH A 60 360 348 HOH HOH . I 4 HOH A 61 361 103 HOH HOH . I 4 HOH A 62 362 201 HOH HOH . I 4 HOH A 63 363 202 HOH HOH . I 4 HOH A 64 364 17 HOH HOH . I 4 HOH A 65 365 166 HOH HOH . I 4 HOH A 66 366 178 HOH HOH . I 4 HOH A 67 367 334 HOH HOH . I 4 HOH A 68 368 231 HOH HOH . I 4 HOH A 69 369 193 HOH HOH . I 4 HOH A 70 370 149 HOH HOH . I 4 HOH A 71 371 35 HOH HOH . I 4 HOH A 72 372 188 HOH HOH . I 4 HOH A 73 373 214 HOH HOH . I 4 HOH A 74 374 79 HOH HOH . I 4 HOH A 75 375 106 HOH HOH . I 4 HOH A 76 376 143 HOH HOH . I 4 HOH A 77 377 200 HOH HOH . I 4 HOH A 78 378 114 HOH HOH . I 4 HOH A 79 379 140 HOH HOH . I 4 HOH A 80 380 318 HOH HOH . I 4 HOH A 81 381 227 HOH HOH . I 4 HOH A 82 382 239 HOH HOH . I 4 HOH A 83 383 256 HOH HOH . I 4 HOH A 84 384 197 HOH HOH . J 4 HOH B 1 301 108 HOH HOH . J 4 HOH B 2 302 191 HOH HOH . J 4 HOH B 3 303 116 HOH HOH . J 4 HOH B 4 304 71 HOH HOH . J 4 HOH B 5 305 137 HOH HOH . J 4 HOH B 6 306 125 HOH HOH . J 4 HOH B 7 307 205 HOH HOH . J 4 HOH B 8 308 128 HOH HOH . J 4 HOH B 9 309 280 HOH HOH . J 4 HOH B 10 310 179 HOH HOH . J 4 HOH B 11 311 123 HOH HOH . J 4 HOH B 12 312 322 HOH HOH . J 4 HOH B 13 313 275 HOH HOH . J 4 HOH B 14 314 186 HOH HOH . J 4 HOH B 15 315 134 HOH HOH . J 4 HOH B 16 316 174 HOH HOH . J 4 HOH B 17 317 44 HOH HOH . J 4 HOH B 18 318 326 HOH HOH . J 4 HOH B 19 319 173 HOH HOH . J 4 HOH B 20 320 67 HOH HOH . J 4 HOH B 21 321 50 HOH HOH . J 4 HOH B 22 322 210 HOH HOH . J 4 HOH B 23 323 109 HOH HOH . J 4 HOH B 24 324 94 HOH HOH . J 4 HOH B 25 325 265 HOH HOH . J 4 HOH B 26 326 187 HOH HOH . J 4 HOH B 27 327 4 HOH HOH . J 4 HOH B 28 328 206 HOH HOH . J 4 HOH B 29 329 21 HOH HOH . J 4 HOH B 30 330 77 HOH HOH . J 4 HOH B 31 331 96 HOH HOH . J 4 HOH B 32 332 10 HOH HOH . J 4 HOH B 33 333 58 HOH HOH . J 4 HOH B 34 334 61 HOH HOH . J 4 HOH B 35 335 32 HOH HOH . J 4 HOH B 36 336 56 HOH HOH . J 4 HOH B 37 337 70 HOH HOH . J 4 HOH B 38 338 180 HOH HOH . J 4 HOH B 39 339 6 HOH HOH . J 4 HOH B 40 340 120 HOH HOH . J 4 HOH B 41 341 29 HOH HOH . J 4 HOH B 42 342 9 HOH HOH . J 4 HOH B 43 343 272 HOH HOH . J 4 HOH B 44 344 268 HOH HOH . J 4 HOH B 45 345 147 HOH HOH . J 4 HOH B 46 346 332 HOH HOH . J 4 HOH B 47 347 195 HOH HOH . J 4 HOH B 48 348 144 HOH HOH . J 4 HOH B 49 349 98 HOH HOH . J 4 HOH B 50 350 26 HOH HOH . J 4 HOH B 51 351 16 HOH HOH . J 4 HOH B 52 352 51 HOH HOH . J 4 HOH B 53 353 86 HOH HOH . J 4 HOH B 54 354 133 HOH HOH . J 4 HOH B 55 355 72 HOH HOH . J 4 HOH B 56 356 60 HOH HOH . J 4 HOH B 57 357 208 HOH HOH . J 4 HOH B 58 358 159 HOH HOH . J 4 HOH B 59 359 65 HOH HOH . J 4 HOH B 60 360 129 HOH HOH . J 4 HOH B 61 361 24 HOH HOH . J 4 HOH B 62 362 42 HOH HOH . J 4 HOH B 63 363 185 HOH HOH . J 4 HOH B 64 364 27 HOH HOH . J 4 HOH B 65 365 209 HOH HOH . J 4 HOH B 66 366 34 HOH HOH . J 4 HOH B 67 367 66 HOH HOH . J 4 HOH B 68 368 329 HOH HOH . J 4 HOH B 69 369 344 HOH HOH . J 4 HOH B 70 370 74 HOH HOH . J 4 HOH B 71 371 139 HOH HOH . J 4 HOH B 72 372 184 HOH HOH . J 4 HOH B 73 373 342 HOH HOH . J 4 HOH B 74 374 5 HOH HOH . J 4 HOH B 75 375 226 HOH HOH . J 4 HOH B 76 376 215 HOH HOH . J 4 HOH B 77 377 212 HOH HOH . J 4 HOH B 78 378 211 HOH HOH . J 4 HOH B 79 379 204 HOH HOH . J 4 HOH B 80 380 3 HOH HOH . J 4 HOH B 81 381 199 HOH HOH . J 4 HOH B 82 382 207 HOH HOH . J 4 HOH B 83 383 264 HOH HOH . J 4 HOH B 84 384 346 HOH HOH . J 4 HOH B 85 385 172 HOH HOH . J 4 HOH B 86 386 229 HOH HOH . J 4 HOH B 87 387 279 HOH HOH . J 4 HOH B 88 388 43 HOH HOH . J 4 HOH B 89 389 213 HOH HOH . J 4 HOH B 90 390 281 HOH HOH . J 4 HOH B 91 391 260 HOH HOH . J 4 HOH B 92 392 273 HOH HOH . J 4 HOH B 93 393 336 HOH HOH . J 4 HOH B 94 394 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 RET . . . C 2 -16.66 -4.134 -14.034 1 61.72 ? C12 RET 201 A 1 HETATM 2 C C13 RET . . . C 2 -17.495 -4.415 -12.853 1 58.15 ? C13 RET 201 A 1 HETATM 3 C C14 RET . . . C 2 -17.096 -5.329 -11.956 1 55.79 ? C14 RET 201 A 1 HETATM 4 C C15 RET . . . C 2 -17.911 -5.632 -10.779 1 54.59 ? C15 RET 201 A 1 HETATM 5 C C20 RET . . . C 2 -18.786 -3.674 -12.671 1 60.29 ? C20 RET 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 680 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #