data_4ZR6 # _model_server_result.job_id CtbHEX5qFqfZ5SrfWZx55Q _model_server_result.datetime_utc '2025-09-10 00:04:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4ZR6 # _exptl.entry_id 4ZR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.288 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{(4E)-4-[(1-methyl-1H-imidazol-5-yl)methylidene]-3,4-dihydro-2H-pyrrol-5-yl}pyridine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.32 _cell.angle_gamma 90 _cell.entry_id 4ZR6 _cell.length_a 68.924 _cell.length_b 78.1 _cell.length_c 120.502 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 131 A CYS 123 1_555 A SG CYS 144 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 195 A CYS 187 1_555 A SG CYS 196 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 B SG CYS 131 B CYS 123 1_555 B SG CYS 144 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf4 B SG CYS 195 B CYS 187 1_555 B SG CYS 196 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf5 C SG CYS 131 C CYS 123 1_555 C SG CYS 144 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf6 C SG CYS 195 C CYS 187 1_555 C SG CYS 196 C CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf7 D SG CYS 131 D CYS 123 1_555 D SG CYS 144 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 D SG CYS 195 D CYS 187 1_555 D SG CYS 196 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf9 E SG CYS 131 E CYS 123 1_555 E SG CYS 144 E CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 E SG CYS 195 E CYS 187 1_555 E SG CYS 196 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C14 H14 N4' _chem_comp.formula_weight 238.288 _chem_comp.id 4QW _chem_comp.mon_nstd_flag . _chem_comp.name 3-{(4E)-4-[(1-methyl-1H-imidazol-5-yl)methylidene]-3,4-dihydro-2H-pyrrol-5-yl}pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 N04 4QW doub 1 n y C03 N02 4QW sing 2 n y N04 C05 4QW sing 3 n y C01 N02 4QW sing 4 n n N02 C06 4QW sing 5 n y C05 C06 4QW doub 6 n y C09 C10 4QW sing 7 n n C09 C08 4QW sing 8 n n C06 C07 4QW sing 9 n n C10 N11 4QW sing 10 n n C08 C07 4QW doub 11 e n C08 C12 4QW sing 12 n n N11 C12 4QW doub 13 n n C12 C13 4QW sing 14 n n C13 C14 4QW doub 15 n y C13 C18 4QW sing 16 n y C14 C15 4QW sing 17 n y C18 N17 4QW doub 18 n y C15 C16 4QW doub 19 n y N17 C16 4QW sing 20 n y C10 H102 4QW sing 21 n n C10 H101 4QW sing 22 n n C15 H151 4QW sing 23 n n C01 H011 4QW sing 24 n n C01 H012 4QW sing 25 n n C01 H013 4QW sing 26 n n C03 H031 4QW sing 27 n n C05 H051 4QW sing 28 n n C07 H071 4QW sing 29 n n C09 H092 4QW sing 30 n n C09 H091 4QW sing 31 n n C14 H141 4QW sing 32 n n C16 H161 4QW sing 33 n n C18 H181 4QW sing 34 n n # _atom_sites.entry_id 4ZR6 _atom_sites.fract_transf_matrix[1][1] 0.014509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008494 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 4QW A 1 301 5 4QW LIG . G 2 4QW B 1 301 2 4QW LIG . H 2 4QW C 1 301 1 4QW LIG . I 2 4QW D 1 301 3 4QW LIG . J 2 4QW E 1 301 4 4QW LIG . K 3 HOH B 1 401 7 HOH HOH . K 3 HOH B 2 402 6 HOH HOH . L 3 HOH C 1 401 2 HOH HOH . L 3 HOH C 2 402 3 HOH HOH . L 3 HOH C 3 403 4 HOH HOH . M 3 HOH D 1 401 1 HOH HOH . N 3 HOH E 1 401 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 4QW . . . F 2 10.764 21.011 33.536 1 61.22 ? C10 4QW 301 A 1 HETATM 2 C C13 4QW . . . F 2 9.064 17.646 33.155 1 51.5 ? C13 4QW 301 A 1 HETATM 3 C C15 4QW . . . F 2 7.034 16.61 33.86 1 51.27 ? C15 4QW 301 A 1 HETATM 4 C C01 4QW . . . F 2 15.205 18.848 32.395 1 55.01 ? C01 4QW 301 A 1 HETATM 5 N N02 4QW . . . F 2 14.687 18.437 33.662 1 50.47 ? N02 4QW 301 A 1 HETATM 6 C C03 4QW . . . F 2 15.373 18.388 34.82 1 48.48 ? C03 4QW 301 A 1 HETATM 7 N N04 4QW . . . F 2 14.57 17.952 35.798 1 48.71 ? N04 4QW 301 A 1 HETATM 8 C C05 4QW . . . F 2 13.367 17.725 35.267 1 46.02 ? C05 4QW 301 A 1 HETATM 9 C C06 4QW . . . F 2 13.436 18.03 33.914 1 47.6 ? C06 4QW 301 A 1 HETATM 10 C C07 4QW . . . F 2 12.297 17.905 32.912 1 48.85 ? C07 4QW 301 A 1 HETATM 11 C C08 4QW . . . F 2 11.394 18.903 32.709 1 53.1 ? C08 4QW 301 A 1 HETATM 12 C C09 4QW . . . F 2 11.722 20.328 32.569 1 56.52 ? C09 4QW 301 A 1 HETATM 13 N N11 4QW . . . F 2 9.594 20.138 33.657 1 54.83 ? N11 4QW 301 A 1 HETATM 14 C C12 4QW . . . F 2 9.953 18.861 33.087 1 53.78 ? C12 4QW 301 A 1 HETATM 15 C C14 4QW . . . F 2 7.839 17.734 33.801 1 50.04 ? C14 4QW 301 A 1 HETATM 16 C C16 4QW . . . F 2 7.475 15.438 33.272 1 51.69 ? C16 4QW 301 A 1 HETATM 17 N N17 4QW . . . F 2 8.665 15.374 32.649 1 50.66 ? N17 4QW 301 A 1 HETATM 18 C C18 4QW . . . F 2 9.455 16.452 32.581 1 48.15 ? C18 4QW 301 A 1 HETATM 19 H H102 4QW . . . F 2 11.209 21.044 34.403 1 73.46 ? H102 4QW 301 A 1 HETATM 20 H H101 4QW . . . F 2 10.579 21.962 33.404 1 73.46 ? H101 4QW 301 A 1 HETATM 21 H H151 4QW . . . F 2 6.167 16.643 34.309 1 61.53 ? H151 4QW 301 A 1 HETATM 22 H H011 4QW . . . F 2 16.048 19.326 32.527 1 66.01 ? H011 4QW 301 A 1 HETATM 23 H H012 4QW . . . F 2 14.56 19.44 31.956 1 66.01 ? H012 4QW 301 A 1 HETATM 24 H H013 4QW . . . F 2 15.361 18.055 31.831 1 66.01 ? H013 4QW 301 A 1 HETATM 25 H H031 4QW . . . F 2 16.313 18.635 34.93 1 58.18 ? H031 4QW 301 A 1 HETATM 26 H H051 4QW . . . F 2 12.576 17.396 35.746 1 55.22 ? H051 4QW 301 A 1 HETATM 27 H H071 4QW . . . F 2 12.211 17.077 32.394 1 58.62 ? H071 4QW 301 A 1 HETATM 28 H H092 4QW . . . F 2 11.583 20.696 31.677 1 67.82 ? H092 4QW 301 A 1 HETATM 29 H H091 4QW . . . F 2 12.689 20.439 32.684 1 67.82 ? H091 4QW 301 A 1 HETATM 30 H H141 4QW . . . F 2 7.552 18.574 34.211 1 60.05 ? H141 4QW 301 A 1 HETATM 31 H H161 4QW . . . F 2 6.911 14.644 33.307 1 62.03 ? H161 4QW 301 A 1 HETATM 32 H H181 4QW . . . F 2 10.319 16.393 32.128 1 57.78 ? H181 4QW 301 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #