data_4ZRM # _model_server_result.job_id trVw0dNlYPYJsSzrv5gz1w _model_server_result.datetime_utc '2024-11-12 20:33:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zrm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 4ZRM # _exptl.entry_id 4ZRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZRM _cell.length_a 82.542 _cell.length_b 150.262 _cell.length_c 60.606 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4ZRM _atom_sites.fract_transf_matrix[1][1] 0.012115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 1 NAD NAD . D 3 GOL A 1 402 1 GOL GOL . E 3 GOL A 1 403 3 GOL GOL . F 2 NAD B 1 401 2 NAD NAD . G 3 GOL B 1 402 2 GOL GOL . H 4 HOH A 1 501 276 HOH HOH . H 4 HOH A 2 502 29 HOH HOH . H 4 HOH A 3 503 93 HOH HOH . H 4 HOH A 4 504 114 HOH HOH . H 4 HOH A 5 505 8 HOH HOH . H 4 HOH A 6 506 90 HOH HOH . H 4 HOH A 7 507 161 HOH HOH . H 4 HOH A 8 508 159 HOH HOH . H 4 HOH A 9 509 65 HOH HOH . H 4 HOH A 10 510 277 HOH HOH . H 4 HOH A 11 511 6 HOH HOH . H 4 HOH A 12 512 63 HOH HOH . H 4 HOH A 13 513 104 HOH HOH . H 4 HOH A 14 514 258 HOH HOH . H 4 HOH A 15 515 94 HOH HOH . H 4 HOH A 16 516 262 HOH HOH . H 4 HOH A 17 517 152 HOH HOH . H 4 HOH A 18 518 265 HOH HOH . H 4 HOH A 19 519 162 HOH HOH . H 4 HOH A 20 520 73 HOH HOH . H 4 HOH A 21 521 97 HOH HOH . H 4 HOH A 22 522 76 HOH HOH . H 4 HOH A 23 523 13 HOH HOH . H 4 HOH A 24 524 60 HOH HOH . H 4 HOH A 25 525 4 HOH HOH . H 4 HOH A 26 526 30 HOH HOH . H 4 HOH A 27 527 59 HOH HOH . H 4 HOH A 28 528 14 HOH HOH . H 4 HOH A 29 529 154 HOH HOH . H 4 HOH A 30 530 23 HOH HOH . H 4 HOH A 31 531 67 HOH HOH . H 4 HOH A 32 532 172 HOH HOH . H 4 HOH A 33 533 168 HOH HOH . H 4 HOH A 34 534 2 HOH HOH . H 4 HOH A 35 535 16 HOH HOH . H 4 HOH A 36 536 38 HOH HOH . H 4 HOH A 37 537 107 HOH HOH . H 4 HOH A 38 538 84 HOH HOH . H 4 HOH A 39 539 45 HOH HOH . H 4 HOH A 40 540 69 HOH HOH . H 4 HOH A 41 541 33 HOH HOH . H 4 HOH A 42 542 150 HOH HOH . H 4 HOH A 43 543 270 HOH HOH . H 4 HOH A 44 544 163 HOH HOH . H 4 HOH A 45 545 62 HOH HOH . H 4 HOH A 46 546 24 HOH HOH . H 4 HOH A 47 547 100 HOH HOH . H 4 HOH A 48 548 157 HOH HOH . H 4 HOH A 49 549 18 HOH HOH . H 4 HOH A 50 550 3 HOH HOH . H 4 HOH A 51 551 87 HOH HOH . H 4 HOH A 52 552 41 HOH HOH . H 4 HOH A 53 553 181 HOH HOH . H 4 HOH A 54 554 83 HOH HOH . H 4 HOH A 55 555 272 HOH HOH . H 4 HOH A 56 556 34 HOH HOH . H 4 HOH A 57 557 101 HOH HOH . H 4 HOH A 58 558 19 HOH HOH . H 4 HOH A 59 559 5 HOH HOH . H 4 HOH A 60 560 149 HOH HOH . H 4 HOH A 61 561 103 HOH HOH . H 4 HOH A 62 562 182 HOH HOH . H 4 HOH A 63 563 166 HOH HOH . H 4 HOH A 64 564 99 HOH HOH . H 4 HOH A 65 565 91 HOH HOH . H 4 HOH A 66 566 15 HOH HOH . H 4 HOH A 67 567 81 HOH HOH . H 4 HOH A 68 568 264 HOH HOH . H 4 HOH A 69 569 158 HOH HOH . H 4 HOH A 70 570 21 HOH HOH . H 4 HOH A 71 571 155 HOH HOH . H 4 HOH A 72 572 39 HOH HOH . H 4 HOH A 73 573 96 HOH HOH . H 4 HOH A 74 574 86 HOH HOH . H 4 HOH A 75 575 10 HOH HOH . H 4 HOH A 76 576 40 HOH HOH . H 4 HOH A 77 577 151 HOH HOH . H 4 HOH A 78 578 85 HOH HOH . H 4 HOH A 79 579 37 HOH HOH . H 4 HOH A 80 580 156 HOH HOH . H 4 HOH A 81 581 66 HOH HOH . H 4 HOH A 82 582 9 HOH HOH . H 4 HOH A 83 583 261 HOH HOH . H 4 HOH A 84 584 54 HOH HOH . H 4 HOH A 85 585 82 HOH HOH . H 4 HOH A 86 586 173 HOH HOH . H 4 HOH A 87 587 178 HOH HOH . H 4 HOH A 88 588 260 HOH HOH . H 4 HOH A 89 589 74 HOH HOH . H 4 HOH A 90 590 22 HOH HOH . H 4 HOH A 91 591 1 HOH HOH . H 4 HOH A 92 592 89 HOH HOH . H 4 HOH A 93 593 88 HOH HOH . H 4 HOH A 94 594 115 HOH HOH . H 4 HOH A 95 595 11 HOH HOH . H 4 HOH A 96 596 49 HOH HOH . H 4 HOH A 97 597 98 HOH HOH . H 4 HOH A 98 598 68 HOH HOH . H 4 HOH A 99 599 174 HOH HOH . H 4 HOH A 100 600 72 HOH HOH . H 4 HOH A 101 601 61 HOH HOH . H 4 HOH A 102 602 31 HOH HOH . H 4 HOH A 103 603 175 HOH HOH . H 4 HOH A 104 604 64 HOH HOH . H 4 HOH A 105 605 71 HOH HOH . H 4 HOH A 106 606 167 HOH HOH . H 4 HOH A 107 607 7 HOH HOH . H 4 HOH A 108 608 20 HOH HOH . H 4 HOH A 109 609 200 HOH HOH . H 4 HOH A 110 610 176 HOH HOH . H 4 HOH A 111 611 78 HOH HOH . H 4 HOH A 112 612 12 HOH HOH . H 4 HOH A 113 613 160 HOH HOH . H 4 HOH A 114 614 177 HOH HOH . H 4 HOH A 115 615 79 HOH HOH . H 4 HOH A 116 616 17 HOH HOH . H 4 HOH A 117 617 180 HOH HOH . H 4 HOH A 118 618 263 HOH HOH . H 4 HOH A 119 619 48 HOH HOH . H 4 HOH A 120 620 274 HOH HOH . H 4 HOH A 121 621 27 HOH HOH . H 4 HOH A 122 622 165 HOH HOH . H 4 HOH A 123 623 43 HOH HOH . H 4 HOH A 124 624 201 HOH HOH . H 4 HOH A 125 625 92 HOH HOH . H 4 HOH A 126 626 268 HOH HOH . H 4 HOH A 127 627 153 HOH HOH . H 4 HOH A 128 628 229 HOH HOH . H 4 HOH A 129 629 56 HOH HOH . H 4 HOH A 130 630 36 HOH HOH . H 4 HOH A 131 631 77 HOH HOH . H 4 HOH A 132 632 164 HOH HOH . H 4 HOH A 133 633 148 HOH HOH . H 4 HOH A 134 634 95 HOH HOH . H 4 HOH A 135 635 147 HOH HOH . H 4 HOH A 136 636 35 HOH HOH . H 4 HOH A 137 637 52 HOH HOH . H 4 HOH A 138 638 102 HOH HOH . H 4 HOH A 139 639 259 HOH HOH . H 4 HOH A 140 640 70 HOH HOH . H 4 HOH A 141 641 273 HOH HOH . H 4 HOH A 142 642 44 HOH HOH . H 4 HOH A 143 643 269 HOH HOH . H 4 HOH A 144 644 105 HOH HOH . H 4 HOH A 145 645 50 HOH HOH . H 4 HOH A 146 646 46 HOH HOH . H 4 HOH A 147 647 26 HOH HOH . H 4 HOH A 148 648 80 HOH HOH . H 4 HOH A 149 649 171 HOH HOH . H 4 HOH A 150 650 75 HOH HOH . H 4 HOH A 151 651 25 HOH HOH . H 4 HOH A 152 652 42 HOH HOH . H 4 HOH A 153 653 55 HOH HOH . I 4 HOH B 1 501 225 HOH HOH . I 4 HOH B 2 502 275 HOH HOH . I 4 HOH B 3 503 282 HOH HOH . I 4 HOH B 4 504 255 HOH HOH . I 4 HOH B 5 505 110 HOH HOH . I 4 HOH B 6 506 228 HOH HOH . I 4 HOH B 7 507 206 HOH HOH . I 4 HOH B 8 508 119 HOH HOH . I 4 HOH B 9 509 211 HOH HOH . I 4 HOH B 10 510 127 HOH HOH . I 4 HOH B 11 511 144 HOH HOH . I 4 HOH B 12 512 118 HOH HOH . I 4 HOH B 13 513 193 HOH HOH . I 4 HOH B 14 514 256 HOH HOH . I 4 HOH B 15 515 138 HOH HOH . I 4 HOH B 16 516 58 HOH HOH . I 4 HOH B 17 517 253 HOH HOH . I 4 HOH B 18 518 51 HOH HOH . I 4 HOH B 19 519 108 HOH HOH . I 4 HOH B 20 520 146 HOH HOH . I 4 HOH B 21 521 238 HOH HOH . I 4 HOH B 22 522 179 HOH HOH . I 4 HOH B 23 523 218 HOH HOH . I 4 HOH B 24 524 207 HOH HOH . I 4 HOH B 25 525 220 HOH HOH . I 4 HOH B 26 526 187 HOH HOH . I 4 HOH B 27 527 136 HOH HOH . I 4 HOH B 28 528 134 HOH HOH . I 4 HOH B 29 529 132 HOH HOH . I 4 HOH B 30 530 234 HOH HOH . I 4 HOH B 31 531 137 HOH HOH . I 4 HOH B 32 532 121 HOH HOH . I 4 HOH B 33 533 57 HOH HOH . I 4 HOH B 34 534 170 HOH HOH . I 4 HOH B 35 535 219 HOH HOH . I 4 HOH B 36 536 185 HOH HOH . I 4 HOH B 37 537 246 HOH HOH . I 4 HOH B 38 538 186 HOH HOH . I 4 HOH B 39 539 242 HOH HOH . I 4 HOH B 40 540 250 HOH HOH . I 4 HOH B 41 541 233 HOH HOH . I 4 HOH B 42 542 239 HOH HOH . I 4 HOH B 43 543 216 HOH HOH . I 4 HOH B 44 544 213 HOH HOH . I 4 HOH B 45 545 237 HOH HOH . I 4 HOH B 46 546 241 HOH HOH . I 4 HOH B 47 547 28 HOH HOH . I 4 HOH B 48 548 32 HOH HOH . I 4 HOH B 49 549 226 HOH HOH . I 4 HOH B 50 550 189 HOH HOH . I 4 HOH B 51 551 188 HOH HOH . I 4 HOH B 52 552 247 HOH HOH . I 4 HOH B 53 553 254 HOH HOH . I 4 HOH B 54 554 203 HOH HOH . I 4 HOH B 55 555 205 HOH HOH . I 4 HOH B 56 556 194 HOH HOH . I 4 HOH B 57 557 120 HOH HOH . I 4 HOH B 58 558 142 HOH HOH . I 4 HOH B 59 559 116 HOH HOH . I 4 HOH B 60 560 123 HOH HOH . I 4 HOH B 61 561 214 HOH HOH . I 4 HOH B 62 562 210 HOH HOH . I 4 HOH B 63 563 122 HOH HOH . I 4 HOH B 64 564 191 HOH HOH . I 4 HOH B 65 565 199 HOH HOH . I 4 HOH B 66 566 236 HOH HOH . I 4 HOH B 67 567 130 HOH HOH . I 4 HOH B 68 568 109 HOH HOH . I 4 HOH B 69 569 232 HOH HOH . I 4 HOH B 70 570 135 HOH HOH . I 4 HOH B 71 571 252 HOH HOH . I 4 HOH B 72 572 245 HOH HOH . I 4 HOH B 73 573 248 HOH HOH . I 4 HOH B 74 574 129 HOH HOH . I 4 HOH B 75 575 235 HOH HOH . I 4 HOH B 76 576 212 HOH HOH . I 4 HOH B 77 577 112 HOH HOH . I 4 HOH B 78 578 227 HOH HOH . I 4 HOH B 79 579 266 HOH HOH . I 4 HOH B 80 580 249 HOH HOH . I 4 HOH B 81 581 139 HOH HOH . I 4 HOH B 82 582 208 HOH HOH . I 4 HOH B 83 583 196 HOH HOH . I 4 HOH B 84 584 47 HOH HOH . I 4 HOH B 85 585 231 HOH HOH . I 4 HOH B 86 586 169 HOH HOH . I 4 HOH B 87 587 195 HOH HOH . I 4 HOH B 88 588 53 HOH HOH . I 4 HOH B 89 589 251 HOH HOH . I 4 HOH B 90 590 190 HOH HOH . I 4 HOH B 91 591 143 HOH HOH . I 4 HOH B 92 592 278 HOH HOH . I 4 HOH B 93 593 204 HOH HOH . I 4 HOH B 94 594 184 HOH HOH . I 4 HOH B 95 595 221 HOH HOH . I 4 HOH B 96 596 140 HOH HOH . I 4 HOH B 97 597 141 HOH HOH . I 4 HOH B 98 598 111 HOH HOH . I 4 HOH B 99 599 117 HOH HOH . I 4 HOH B 100 600 106 HOH HOH . I 4 HOH B 101 601 222 HOH HOH . I 4 HOH B 102 602 281 HOH HOH . I 4 HOH B 103 603 280 HOH HOH . I 4 HOH B 104 604 257 HOH HOH . I 4 HOH B 105 605 133 HOH HOH . I 4 HOH B 106 606 183 HOH HOH . I 4 HOH B 107 607 198 HOH HOH . I 4 HOH B 108 608 192 HOH HOH . I 4 HOH B 109 609 243 HOH HOH . I 4 HOH B 110 610 197 HOH HOH . I 4 HOH B 111 611 209 HOH HOH . I 4 HOH B 112 612 230 HOH HOH . I 4 HOH B 113 613 128 HOH HOH . I 4 HOH B 114 614 126 HOH HOH . I 4 HOH B 115 615 244 HOH HOH . I 4 HOH B 116 616 223 HOH HOH . I 4 HOH B 117 617 124 HOH HOH . I 4 HOH B 118 618 279 HOH HOH . I 4 HOH B 119 619 217 HOH HOH . I 4 HOH B 120 620 131 HOH HOH . I 4 HOH B 121 621 113 HOH HOH . I 4 HOH B 122 622 145 HOH HOH . I 4 HOH B 123 623 271 HOH HOH . I 4 HOH B 124 624 267 HOH HOH . I 4 HOH B 125 625 202 HOH HOH . I 4 HOH B 126 626 215 HOH HOH . I 4 HOH B 127 627 240 HOH HOH . I 4 HOH B 128 628 224 HOH HOH . I 4 HOH B 129 629 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -1.329 33.663 -19.569 1 27.86 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . G 3 -2.093 32.786 -18.758 1 24.46 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . G 3 -2.262 34.466 -20.472 1 27.58 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . G 3 -1.671 35.694 -20.845 1 31.5 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . G 3 -2.587 33.672 -21.728 1 25.77 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . G 3 -1.523 33.768 -22.647 1 32.36 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #