data_4ZRW # _model_server_result.job_id vkHUB8rIFbkAY9w5aO1wag _model_server_result.datetime_utc '2025-09-17 05:34:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zrw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4ZRW # _exptl.entry_id 4ZRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZRW _cell.length_a 97.8 _cell.length_b 97.8 _cell.length_c 45.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 300 TRE 2 n B GLC 2 B 2 GLC A 300 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 67 1_555 A SG CYS 16 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 17 A CYS 79 1_555 A SG CYS 28 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 45 A CYS 107 1_555 A SG CYS 142 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf4 A SG CYS 116 A CYS 178 1_555 A SG CYS 134 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B C1 GLC . B GLC 1 1_555 B O1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 sing metalc ? metalc1 A O VAL 54 A VAL 116 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc2 A OD1 ASN 56 A ASN 118 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc3 A OE1 GLU 60 A GLU 122 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc4 A OE2 GLU 60 A GLU 122 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc5 A OD1 ASP 80 A ASP 142 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc6 A OD2 ASP 80 A ASP 142 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 A OE1 GLU 84 A GLU 146 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc8 A OE2 GLU 84 A GLU 146 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc9 A OE1 GLU 106 A GLU 168 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc10 A OD1 ASN 108 A ASN 170 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc11 A OD1 ASN 109 A ASN 171 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc12 A OE1 GLU 114 A GLU 176 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc13 A O GLU 114 A GLU 176 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc14 A OD1 ASP 115 A ASP 177 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc15 A OD1 ASN 130 A ASN 192 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc16 A O ASP 131 A ASP 193 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc17 A OD1 ASP 131 A ASP 193 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc18 A OE1 GLU 143 A GLU 205 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc19 A OE2 GLU 143 A GLU 205 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc20 C CA CA . A CA 302 1_555 B O3 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc21 C CA CA . A CA 302 1_555 B O4 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc22 D CA CA . A CA 303 1_555 F O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc23 D CA CA . A CA 303 1_555 F O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc24 E CA CA . A CA 304 1_555 F O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZRW _atom_sites.fract_transf_matrix[1][1] 0.010225 _atom_sites.fract_transf_matrix[1][2] 0.005903 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 302 400 CA CA . D 3 CA A 1 303 401 CA CA . E 3 CA A 1 304 402 CA CA . F 4 HOH A 1 401 51 HOH HOH . F 4 HOH A 2 402 49 HOH HOH . F 4 HOH A 3 403 14 HOH HOH . F 4 HOH A 4 404 38 HOH HOH . F 4 HOH A 5 405 56 HOH HOH . F 4 HOH A 6 406 26 HOH HOH . F 4 HOH A 7 407 46 HOH HOH . F 4 HOH A 8 408 43 HOH HOH . F 4 HOH A 9 409 8 HOH HOH . F 4 HOH A 10 410 15 HOH HOH . F 4 HOH A 11 411 29 HOH HOH . F 4 HOH A 12 412 52 HOH HOH . F 4 HOH A 13 413 27 HOH HOH . F 4 HOH A 14 414 31 HOH HOH . F 4 HOH A 15 415 34 HOH HOH . F 4 HOH A 16 416 9 HOH HOH . F 4 HOH A 17 417 45 HOH HOH . F 4 HOH A 18 418 18 HOH HOH . F 4 HOH A 19 419 1 HOH HOH . F 4 HOH A 20 420 35 HOH HOH . F 4 HOH A 21 421 32 HOH HOH . F 4 HOH A 22 422 7 HOH HOH . F 4 HOH A 23 423 24 HOH HOH . F 4 HOH A 24 424 28 HOH HOH . F 4 HOH A 25 425 20 HOH HOH . F 4 HOH A 26 426 40 HOH HOH . F 4 HOH A 27 427 22 HOH HOH . F 4 HOH A 28 428 30 HOH HOH . F 4 HOH A 29 429 12 HOH HOH . F 4 HOH A 30 430 39 HOH HOH . F 4 HOH A 31 431 6 HOH HOH . F 4 HOH A 32 432 3 HOH HOH . F 4 HOH A 33 433 5 HOH HOH . F 4 HOH A 34 434 2 HOH HOH . F 4 HOH A 35 435 47 HOH HOH . F 4 HOH A 36 436 10 HOH HOH . F 4 HOH A 37 437 50 HOH HOH . F 4 HOH A 38 438 16 HOH HOH . F 4 HOH A 39 439 48 HOH HOH . F 4 HOH A 40 440 37 HOH HOH . F 4 HOH A 41 441 36 HOH HOH . F 4 HOH A 42 442 54 HOH HOH . F 4 HOH A 43 443 55 HOH HOH . F 4 HOH A 44 444 53 HOH HOH . F 4 HOH A 45 445 13 HOH HOH . F 4 HOH A 46 446 44 HOH HOH . F 4 HOH A 47 447 33 HOH HOH . F 4 HOH A 48 448 4 HOH HOH . F 4 HOH A 49 449 11 HOH HOH . F 4 HOH A 50 450 17 HOH HOH . F 4 HOH A 51 451 23 HOH HOH . F 4 HOH A 52 452 41 HOH HOH . F 4 HOH A 53 453 21 HOH HOH . F 4 HOH A 54 454 19 HOH HOH . F 4 HOH A 55 455 42 HOH HOH . F 4 HOH A 56 456 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 44.106 _atom_site.Cartn_y 14.565 _atom_site.Cartn_z -4.539 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.02 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #