data_4ZS3 # _model_server_result.job_id wVw4u2fMYikezks0q1Br4w _model_server_result.datetime_utc '2024-12-02 07:10:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zs3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4ZS3 # _exptl.entry_id 4ZS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.321 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-amino-2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZS3 _cell.length_a 142.239 _cell.length_b 142.239 _cell.length_c 83.426 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 77 1_555 A SG CYS 365 A CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 B O5 AKG . A AKG 601 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 D MN MN . A MN 603 1_555 E O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'C20 H13 N O5' _chem_comp.formula_weight 347.321 _chem_comp.id A4F _chem_comp.mon_nstd_flag . _chem_comp.name '5-amino-2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-aminofluorescein # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C10 A4F sing 1 n n C10 C9 A4F doub 2 n y C10 C11 A4F sing 3 n y C9 C8 A4F sing 4 n y C11 C12 A4F doub 5 n y C8 O2 A4F sing 6 n n C8 C13 A4F doub 7 n y C12 C13 A4F sing 8 n y O2 C7 A4F sing 9 n n C13 C1 A4F sing 10 n n O4 C17 A4F doub 11 n n C7 C6 A4F doub 12 n n C7 C2 A4F sing 13 n n C1 C2 A4F doub 14 n n C1 C14 A4F sing 15 n n C6 C5 A4F sing 16 n n C2 C3 A4F sing 17 n n C17 C18 A4F sing 18 n n C17 O5 A4F sing 19 n n C14 C18 A4F doub 20 n y C14 C15 A4F sing 21 n y C18 C19 A4F sing 22 n y C5 O1 A4F doub 23 n n C5 C4 A4F sing 24 n n C15 C16 A4F doub 25 n y C3 C4 A4F doub 26 n n C19 C20 A4F doub 27 n y C16 C20 A4F sing 28 n y C20 N1 A4F sing 29 n n O5 H1 A4F sing 30 n n C19 H2 A4F sing 31 n n N1 H3 A4F sing 32 n n N1 H4 A4F sing 33 n n C16 H5 A4F sing 34 n n C15 H6 A4F sing 35 n n C12 H7 A4F sing 36 n n C11 H8 A4F sing 37 n n O3 H9 A4F sing 38 n n C9 H10 A4F sing 39 n n C6 H11 A4F sing 40 n n C3 H12 A4F sing 41 n n C4 H13 A4F sing 42 n n # _atom_sites.entry_id 4ZS3 _atom_sites.fract_transf_matrix[1][1] 0.00703 _atom_sites.fract_transf_matrix[1][2] 0.004059 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 601 1550 AKG AKG . C 3 A4F A 1 602 1 A4F A4F . D 4 MN A 1 603 1 MN MN . E 5 HOH A 1 701 3 HOH HOH . E 5 HOH A 2 702 41 HOH HOH . E 5 HOH A 3 703 80 HOH HOH . E 5 HOH A 4 704 65 HOH HOH . E 5 HOH A 5 705 51 HOH HOH . E 5 HOH A 6 706 2 HOH HOH . E 5 HOH A 7 707 56 HOH HOH . E 5 HOH A 8 708 15 HOH HOH . E 5 HOH A 9 709 14 HOH HOH . E 5 HOH A 10 710 26 HOH HOH . E 5 HOH A 11 711 13 HOH HOH . E 5 HOH A 12 712 86 HOH HOH . E 5 HOH A 13 713 22 HOH HOH . E 5 HOH A 14 714 8 HOH HOH . E 5 HOH A 15 715 70 HOH HOH . E 5 HOH A 16 716 16 HOH HOH . E 5 HOH A 17 717 52 HOH HOH . E 5 HOH A 18 718 1 HOH HOH . E 5 HOH A 19 719 62 HOH HOH . E 5 HOH A 20 720 72 HOH HOH . E 5 HOH A 21 721 57 HOH HOH . E 5 HOH A 22 722 36 HOH HOH . E 5 HOH A 23 723 40 HOH HOH . E 5 HOH A 24 724 4 HOH HOH . E 5 HOH A 25 725 7 HOH HOH . E 5 HOH A 26 726 66 HOH HOH . E 5 HOH A 27 727 9 HOH HOH . E 5 HOH A 28 728 44 HOH HOH . E 5 HOH A 29 729 58 HOH HOH . E 5 HOH A 30 730 50 HOH HOH . E 5 HOH A 31 731 53 HOH HOH . E 5 HOH A 32 732 27 HOH HOH . E 5 HOH A 33 733 37 HOH HOH . E 5 HOH A 34 734 11 HOH HOH . E 5 HOH A 35 735 45 HOH HOH . E 5 HOH A 36 736 87 HOH HOH . E 5 HOH A 37 737 34 HOH HOH . E 5 HOH A 38 738 28 HOH HOH . E 5 HOH A 39 739 10 HOH HOH . E 5 HOH A 40 740 19 HOH HOH . E 5 HOH A 41 741 59 HOH HOH . E 5 HOH A 42 742 47 HOH HOH . E 5 HOH A 43 743 17 HOH HOH . E 5 HOH A 44 744 77 HOH HOH . E 5 HOH A 45 745 25 HOH HOH . E 5 HOH A 46 746 84 HOH HOH . E 5 HOH A 47 747 24 HOH HOH . E 5 HOH A 48 748 12 HOH HOH . E 5 HOH A 49 749 54 HOH HOH . E 5 HOH A 50 750 83 HOH HOH . E 5 HOH A 51 751 76 HOH HOH . E 5 HOH A 52 752 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 A4F . . . C 3 177.839 5.548 33.872 1 73.6 ? O5 A4F 602 A 1 HETATM 2 C C17 A4F . . . C 3 177.219 6.364 33.149 1 75.79 ? C17 A4F 602 A 1 HETATM 3 O O4 A4F . . . C 3 177.226 6.282 31.904 1 66.48 ? O4 A4F 602 A 1 HETATM 4 C C18 A4F . . . C 3 176.436 7.445 33.772 1 80.04 ? C18 A4F 602 A 1 HETATM 5 C C19 A4F . . . C 3 177.085 8.287 34.674 1 76.54 ? C19 A4F 602 A 1 HETATM 6 C C20 A4F . . . C 3 176.383 9.315 35.29 1 78.21 ? C20 A4F 602 A 1 HETATM 7 N N1 A4F . . . C 3 176.983 10.123 36.149 1 72.57 ? N1 A4F 602 A 1 HETATM 8 C C16 A4F . . . C 3 175.036 9.489 34.992 1 79.19 ? C16 A4F 602 A 1 HETATM 9 C C15 A4F . . . C 3 174.39 8.64 34.091 1 81.56 ? C15 A4F 602 A 1 HETATM 10 C C14 A4F . . . C 3 175.078 7.61 33.454 1 81.86 ? C14 A4F 602 A 1 HETATM 11 C C1 A4F . . . C 3 174.407 6.76 32.583 1 80.98 ? C1 A4F 602 A 1 HETATM 12 C C13 A4F . . . C 3 173.807 7.21 31.376 1 77.57 ? C13 A4F 602 A 1 HETATM 13 C C12 A4F . . . C 3 174.111 8.445 30.792 1 77.58 ? C12 A4F 602 A 1 HETATM 14 C C11 A4F . . . C 3 173.488 8.847 29.604 1 78.37 ? C11 A4F 602 A 1 HETATM 15 C C10 A4F . . . C 3 172.548 8.025 28.981 1 77.09 ? C10 A4F 602 A 1 HETATM 16 O O3 A4F . . . C 3 171.93 8.39 27.851 1 77.89 ? O3 A4F 602 A 1 HETATM 17 C C9 A4F . . . C 3 172.244 6.802 29.552 1 74.68 ? C9 A4F 602 A 1 HETATM 18 C C8 A4F . . . C 3 172.865 6.406 30.723 1 72.32 ? C8 A4F 602 A 1 HETATM 19 O O2 A4F . . . C 3 172.508 5.181 31.236 1 80.83 ? O2 A4F 602 A 1 HETATM 20 C C2 A4F . . . C 3 174.03 5.494 33.087 1 87.33 ? C2 A4F 602 A 1 HETATM 21 C C7 A4F . . . C 3 173.083 4.717 32.41 1 89.51 ? C7 A4F 602 A 1 HETATM 22 C C6 A4F . . . C 3 172.7 3.469 32.901 1 91.89 ? C6 A4F 602 A 1 HETATM 23 C C3 A4F . . . C 3 174.576 4.978 34.276 1 92.84 ? C3 A4F 602 A 1 HETATM 24 C C4 A4F . . . C 3 174.2 3.728 34.753 1 94.51 ? C4 A4F 602 A 1 HETATM 25 C C5 A4F . . . C 3 173.26 2.973 34.074 1 95.94 ? C5 A4F 602 A 1 HETATM 26 O O1 A4F . . . C 3 172.905 1.782 34.554 1 93.68 ? O1 A4F 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #