data_4ZT8 # _model_server_result.job_id uLd4FJIGpnu6Xtm8SOK-xg _model_server_result.datetime_utc '2024-11-24 05:44:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4ZT8 # _exptl.entry_id 4ZT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZT8 _cell.length_a 130.258 _cell.length_b 130.258 _cell.length_c 39.939 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.442 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4ZT8 _atom_sites.fract_transf_matrix[1][1] 0.007677 _atom_sites.fract_transf_matrix[1][2] 0.004432 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 301 NAG NAG . C 3 GOL A 1 302 302 GOL GOL . D 3 GOL A 1 303 303 GOL GOL . E 4 CYT A 1 304 304 CYT CYT . F 5 HOH A 1 401 572 HOH HOH . F 5 HOH A 2 402 539 HOH HOH . F 5 HOH A 3 403 552 HOH HOH . F 5 HOH A 4 404 435 HOH HOH . F 5 HOH A 5 405 421 HOH HOH . F 5 HOH A 6 406 409 HOH HOH . F 5 HOH A 7 407 593 HOH HOH . F 5 HOH A 8 408 467 HOH HOH . F 5 HOH A 9 409 495 HOH HOH . F 5 HOH A 10 410 587 HOH HOH . F 5 HOH A 11 411 427 HOH HOH . F 5 HOH A 12 412 530 HOH HOH . F 5 HOH A 13 413 543 HOH HOH . F 5 HOH A 14 414 431 HOH HOH . F 5 HOH A 15 415 512 HOH HOH . F 5 HOH A 16 416 609 HOH HOH . F 5 HOH A 17 417 418 HOH HOH . F 5 HOH A 18 418 496 HOH HOH . F 5 HOH A 19 419 459 HOH HOH . F 5 HOH A 20 420 494 HOH HOH . F 5 HOH A 21 421 413 HOH HOH . F 5 HOH A 22 422 547 HOH HOH . F 5 HOH A 23 423 477 HOH HOH . F 5 HOH A 24 424 549 HOH HOH . F 5 HOH A 25 425 591 HOH HOH . F 5 HOH A 26 426 505 HOH HOH . F 5 HOH A 27 427 504 HOH HOH . F 5 HOH A 28 428 429 HOH HOH . F 5 HOH A 29 429 534 HOH HOH . F 5 HOH A 30 430 500 HOH HOH . F 5 HOH A 31 431 452 HOH HOH . F 5 HOH A 32 432 619 HOH HOH . F 5 HOH A 33 433 548 HOH HOH . F 5 HOH A 34 434 603 HOH HOH . F 5 HOH A 35 435 450 HOH HOH . F 5 HOH A 36 436 422 HOH HOH . F 5 HOH A 37 437 451 HOH HOH . F 5 HOH A 38 438 596 HOH HOH . F 5 HOH A 39 439 448 HOH HOH . F 5 HOH A 40 440 615 HOH HOH . F 5 HOH A 41 441 469 HOH HOH . F 5 HOH A 42 442 497 HOH HOH . F 5 HOH A 43 443 407 HOH HOH . F 5 HOH A 44 444 424 HOH HOH . F 5 HOH A 45 445 476 HOH HOH . F 5 HOH A 46 446 510 HOH HOH . F 5 HOH A 47 447 518 HOH HOH . F 5 HOH A 48 448 420 HOH HOH . F 5 HOH A 49 449 551 HOH HOH . F 5 HOH A 50 450 553 HOH HOH . F 5 HOH A 51 451 428 HOH HOH . F 5 HOH A 52 452 444 HOH HOH . F 5 HOH A 53 453 440 HOH HOH . F 5 HOH A 54 454 403 HOH HOH . F 5 HOH A 55 455 571 HOH HOH . F 5 HOH A 56 456 511 HOH HOH . F 5 HOH A 57 457 466 HOH HOH . F 5 HOH A 58 458 425 HOH HOH . F 5 HOH A 59 459 437 HOH HOH . F 5 HOH A 60 460 524 HOH HOH . F 5 HOH A 61 461 555 HOH HOH . F 5 HOH A 62 462 527 HOH HOH . F 5 HOH A 63 463 461 HOH HOH . F 5 HOH A 64 464 564 HOH HOH . F 5 HOH A 65 465 417 HOH HOH . F 5 HOH A 66 466 408 HOH HOH . F 5 HOH A 67 467 576 HOH HOH . F 5 HOH A 68 468 620 HOH HOH . F 5 HOH A 69 469 405 HOH HOH . F 5 HOH A 70 470 573 HOH HOH . F 5 HOH A 71 471 556 HOH HOH . F 5 HOH A 72 472 514 HOH HOH . F 5 HOH A 73 473 401 HOH HOH . F 5 HOH A 74 474 426 HOH HOH . F 5 HOH A 75 475 531 HOH HOH . F 5 HOH A 76 476 436 HOH HOH . F 5 HOH A 77 477 561 HOH HOH . F 5 HOH A 78 478 509 HOH HOH . F 5 HOH A 79 479 557 HOH HOH . F 5 HOH A 80 480 449 HOH HOH . F 5 HOH A 81 481 588 HOH HOH . F 5 HOH A 82 482 560 HOH HOH . F 5 HOH A 83 483 488 HOH HOH . F 5 HOH A 84 484 462 HOH HOH . F 5 HOH A 85 485 474 HOH HOH . F 5 HOH A 86 486 581 HOH HOH . F 5 HOH A 87 487 416 HOH HOH . F 5 HOH A 88 488 411 HOH HOH . F 5 HOH A 89 489 567 HOH HOH . F 5 HOH A 90 490 597 HOH HOH . F 5 HOH A 91 491 580 HOH HOH . F 5 HOH A 92 492 481 HOH HOH . F 5 HOH A 93 493 526 HOH HOH . F 5 HOH A 94 494 498 HOH HOH . F 5 HOH A 95 495 493 HOH HOH . F 5 HOH A 96 496 614 HOH HOH . F 5 HOH A 97 497 590 HOH HOH . F 5 HOH A 98 498 414 HOH HOH . F 5 HOH A 99 499 515 HOH HOH . F 5 HOH A 100 500 423 HOH HOH . F 5 HOH A 101 501 507 HOH HOH . F 5 HOH A 102 502 456 HOH HOH . F 5 HOH A 103 503 447 HOH HOH . F 5 HOH A 104 504 442 HOH HOH . F 5 HOH A 105 505 585 HOH HOH . F 5 HOH A 106 506 434 HOH HOH . F 5 HOH A 107 507 455 HOH HOH . F 5 HOH A 108 508 458 HOH HOH . F 5 HOH A 109 509 579 HOH HOH . F 5 HOH A 110 510 473 HOH HOH . F 5 HOH A 111 511 601 HOH HOH . F 5 HOH A 112 512 433 HOH HOH . F 5 HOH A 113 513 430 HOH HOH . F 5 HOH A 114 514 486 HOH HOH . F 5 HOH A 115 515 443 HOH HOH . F 5 HOH A 116 516 598 HOH HOH . F 5 HOH A 117 517 460 HOH HOH . F 5 HOH A 118 518 554 HOH HOH . F 5 HOH A 119 519 516 HOH HOH . F 5 HOH A 120 520 501 HOH HOH . F 5 HOH A 121 521 612 HOH HOH . F 5 HOH A 122 522 480 HOH HOH . F 5 HOH A 123 523 520 HOH HOH . F 5 HOH A 124 524 541 HOH HOH . F 5 HOH A 125 525 492 HOH HOH . F 5 HOH A 126 526 478 HOH HOH . F 5 HOH A 127 527 577 HOH HOH . F 5 HOH A 128 528 454 HOH HOH . F 5 HOH A 129 529 475 HOH HOH . F 5 HOH A 130 530 513 HOH HOH . F 5 HOH A 131 531 537 HOH HOH . F 5 HOH A 132 532 594 HOH HOH . F 5 HOH A 133 533 602 HOH HOH . F 5 HOH A 134 534 540 HOH HOH . F 5 HOH A 135 535 521 HOH HOH . F 5 HOH A 136 536 575 HOH HOH . F 5 HOH A 137 537 446 HOH HOH . F 5 HOH A 138 538 406 HOH HOH . F 5 HOH A 139 539 438 HOH HOH . F 5 HOH A 140 540 574 HOH HOH . F 5 HOH A 141 541 432 HOH HOH . F 5 HOH A 142 542 529 HOH HOH . F 5 HOH A 143 543 463 HOH HOH . F 5 HOH A 144 544 538 HOH HOH . F 5 HOH A 145 545 482 HOH HOH . F 5 HOH A 146 546 412 HOH HOH . F 5 HOH A 147 547 566 HOH HOH . F 5 HOH A 148 548 465 HOH HOH . F 5 HOH A 149 549 544 HOH HOH . F 5 HOH A 150 550 522 HOH HOH . F 5 HOH A 151 551 535 HOH HOH . F 5 HOH A 152 552 607 HOH HOH . F 5 HOH A 153 553 503 HOH HOH . F 5 HOH A 154 554 470 HOH HOH . F 5 HOH A 155 555 484 HOH HOH . F 5 HOH A 156 556 533 HOH HOH . F 5 HOH A 157 557 604 HOH HOH . F 5 HOH A 158 558 536 HOH HOH . F 5 HOH A 159 559 565 HOH HOH . F 5 HOH A 160 560 471 HOH HOH . F 5 HOH A 161 561 613 HOH HOH . F 5 HOH A 162 562 485 HOH HOH . F 5 HOH A 163 563 502 HOH HOH . F 5 HOH A 164 564 599 HOH HOH . F 5 HOH A 165 565 464 HOH HOH . F 5 HOH A 166 566 410 HOH HOH . F 5 HOH A 167 567 490 HOH HOH . F 5 HOH A 168 568 519 HOH HOH . F 5 HOH A 169 569 606 HOH HOH . F 5 HOH A 170 570 472 HOH HOH . F 5 HOH A 171 571 559 HOH HOH . F 5 HOH A 172 572 445 HOH HOH . F 5 HOH A 173 573 479 HOH HOH . F 5 HOH A 174 574 419 HOH HOH . F 5 HOH A 175 575 441 HOH HOH . F 5 HOH A 176 576 600 HOH HOH . F 5 HOH A 177 577 611 HOH HOH . F 5 HOH A 178 578 610 HOH HOH . F 5 HOH A 179 579 439 HOH HOH . F 5 HOH A 180 580 616 HOH HOH . F 5 HOH A 181 581 453 HOH HOH . F 5 HOH A 182 582 415 HOH HOH . F 5 HOH A 183 583 542 HOH HOH . F 5 HOH A 184 584 489 HOH HOH . F 5 HOH A 185 585 586 HOH HOH . F 5 HOH A 186 586 468 HOH HOH . F 5 HOH A 187 587 457 HOH HOH . F 5 HOH A 188 588 582 HOH HOH . F 5 HOH A 189 589 595 HOH HOH . F 5 HOH A 190 590 608 HOH HOH . F 5 HOH A 191 591 545 HOH HOH . F 5 HOH A 192 592 617 HOH HOH . F 5 HOH A 193 593 402 HOH HOH . F 5 HOH A 194 594 483 HOH HOH . F 5 HOH A 195 595 404 HOH HOH . F 5 HOH A 196 596 583 HOH HOH . F 5 HOH A 197 597 605 HOH HOH . F 5 HOH A 198 598 584 HOH HOH . F 5 HOH A 199 599 562 HOH HOH . F 5 HOH A 200 600 589 HOH HOH . F 5 HOH A 201 601 592 HOH HOH . F 5 HOH A 202 602 570 HOH HOH . F 5 HOH A 203 603 508 HOH HOH . F 5 HOH A 204 604 487 HOH HOH . F 5 HOH A 205 605 499 HOH HOH . F 5 HOH A 206 606 550 HOH HOH . F 5 HOH A 207 607 563 HOH HOH . F 5 HOH A 208 608 517 HOH HOH . F 5 HOH A 209 609 528 HOH HOH . F 5 HOH A 210 610 578 HOH HOH . F 5 HOH A 211 611 618 HOH HOH . F 5 HOH A 212 612 568 HOH HOH . F 5 HOH A 213 613 491 HOH HOH . F 5 HOH A 214 614 532 HOH HOH . F 5 HOH A 215 615 546 HOH HOH . F 5 HOH A 216 616 525 HOH HOH . F 5 HOH A 217 617 569 HOH HOH . F 5 HOH A 218 618 506 HOH HOH . F 5 HOH A 219 619 558 HOH HOH . F 5 HOH A 220 620 523 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -41.463 12.497 -17.898 1 51.89 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . B 2 -41.842 12.187 -19.335 1 52.79 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . B 2 -42.313 10.732 -19.456 1 52.24 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . B 2 -41.515 9.772 -18.57 1 51.91 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . B 2 -41.373 10.332 -17.158 1 51.66 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . B 2 -40.635 9.422 -16.181 1 51.21 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . B 2 -42.605 14.435 -19.978 1 53.99 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . B 2 -43.778 15.345 -20.202 1 53.9 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . B 2 -42.877 13.17 -19.616 1 53.64 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . B 2 -42.196 10.299 -20.79 1 52.44 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . B 2 -42.167 8.522 -18.536 1 52.87 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . B 2 -40.648 11.525 -17.299 1 52.2 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . B 2 -39.369 9.083 -16.697 1 51.2 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . B 2 -41.464 14.877 -20.142 1 54.96 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #