data_4ZT8
#
_model_server_result.job_id            mQwibZU_K90YIehejiC9Cg 
_model_server_result.datetime_utc      '2024-11-24 05:38:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zt8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    4ZT8 
#
_exptl.entry_id    4ZT8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              111.102 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-AMINOPYRIMIDIN-2(1H)-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4ZT8 
_cell.length_a            130.258 
_cell.length_b            130.258 
_cell.length_c            39.939 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZT8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            ND2 
_struct_conn.ptnr1_label_comp_id            ASN 
_struct_conn.ptnr1_label_seq_id             227 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASN 
_struct_conn.ptnr1_auth_seq_id              227 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            NAG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NAG 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.442 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H5 N3 O' 
_chem_comp.formula_weight    111.102 
_chem_comp.id                CYT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-AMINOPYRIMIDIN-2(1H)-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CYTOSINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C4 CYT sing 70 n y 
N3 C2 CYT sing 71 n y 
N3 HN3 CYT sing 72 n n 
C4 N4 CYT sing 73 n n 
C4 C5 CYT doub 74 n y 
N1 C2 CYT sing 75 n y 
N1 C6 CYT doub 76 n y 
C2 O2 CYT doub 77 n n 
N4 HN41 CYT sing 78 n n 
N4 HN42 CYT sing 79 n n 
C5 C6 CYT sing 80 n y 
C5 H5 CYT sing 81 n n 
C6 H6 CYT sing 82 n n 
#
_atom_sites.entry_id                     4ZT8 
_atom_sites.fract_transf_matrix[1][1]    0.007677 
_atom_sites.fract_transf_matrix[1][2]    0.004432 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008865 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 301 301 NAG NAG . 
C 3 GOL A 1 302 302 GOL GOL . 
D 3 GOL A 1 303 303 GOL GOL . 
E 4 CYT A 1 304 304 CYT CYT . 
F 5 HOH A 1 401 572 HOH HOH . 
F 5 HOH A 2 402 539 HOH HOH . 
F 5 HOH A 3 403 552 HOH HOH . 
F 5 HOH A 4 404 435 HOH HOH . 
F 5 HOH A 5 405 421 HOH HOH . 
F 5 HOH A 6 406 409 HOH HOH . 
F 5 HOH A 7 407 593 HOH HOH . 
F 5 HOH A 8 408 467 HOH HOH . 
F 5 HOH A 9 409 495 HOH HOH . 
F 5 HOH A 10 410 587 HOH HOH . 
F 5 HOH A 11 411 427 HOH HOH . 
F 5 HOH A 12 412 530 HOH HOH . 
F 5 HOH A 13 413 543 HOH HOH . 
F 5 HOH A 14 414 431 HOH HOH . 
F 5 HOH A 15 415 512 HOH HOH . 
F 5 HOH A 16 416 609 HOH HOH . 
F 5 HOH A 17 417 418 HOH HOH . 
F 5 HOH A 18 418 496 HOH HOH . 
F 5 HOH A 19 419 459 HOH HOH . 
F 5 HOH A 20 420 494 HOH HOH . 
F 5 HOH A 21 421 413 HOH HOH . 
F 5 HOH A 22 422 547 HOH HOH . 
F 5 HOH A 23 423 477 HOH HOH . 
F 5 HOH A 24 424 549 HOH HOH . 
F 5 HOH A 25 425 591 HOH HOH . 
F 5 HOH A 26 426 505 HOH HOH . 
F 5 HOH A 27 427 504 HOH HOH . 
F 5 HOH A 28 428 429 HOH HOH . 
F 5 HOH A 29 429 534 HOH HOH . 
F 5 HOH A 30 430 500 HOH HOH . 
F 5 HOH A 31 431 452 HOH HOH . 
F 5 HOH A 32 432 619 HOH HOH . 
F 5 HOH A 33 433 548 HOH HOH . 
F 5 HOH A 34 434 603 HOH HOH . 
F 5 HOH A 35 435 450 HOH HOH . 
F 5 HOH A 36 436 422 HOH HOH . 
F 5 HOH A 37 437 451 HOH HOH . 
F 5 HOH A 38 438 596 HOH HOH . 
F 5 HOH A 39 439 448 HOH HOH . 
F 5 HOH A 40 440 615 HOH HOH . 
F 5 HOH A 41 441 469 HOH HOH . 
F 5 HOH A 42 442 497 HOH HOH . 
F 5 HOH A 43 443 407 HOH HOH . 
F 5 HOH A 44 444 424 HOH HOH . 
F 5 HOH A 45 445 476 HOH HOH . 
F 5 HOH A 46 446 510 HOH HOH . 
F 5 HOH A 47 447 518 HOH HOH . 
F 5 HOH A 48 448 420 HOH HOH . 
F 5 HOH A 49 449 551 HOH HOH . 
F 5 HOH A 50 450 553 HOH HOH . 
F 5 HOH A 51 451 428 HOH HOH . 
F 5 HOH A 52 452 444 HOH HOH . 
F 5 HOH A 53 453 440 HOH HOH . 
F 5 HOH A 54 454 403 HOH HOH . 
F 5 HOH A 55 455 571 HOH HOH . 
F 5 HOH A 56 456 511 HOH HOH . 
F 5 HOH A 57 457 466 HOH HOH . 
F 5 HOH A 58 458 425 HOH HOH . 
F 5 HOH A 59 459 437 HOH HOH . 
F 5 HOH A 60 460 524 HOH HOH . 
F 5 HOH A 61 461 555 HOH HOH . 
F 5 HOH A 62 462 527 HOH HOH . 
F 5 HOH A 63 463 461 HOH HOH . 
F 5 HOH A 64 464 564 HOH HOH . 
F 5 HOH A 65 465 417 HOH HOH . 
F 5 HOH A 66 466 408 HOH HOH . 
F 5 HOH A 67 467 576 HOH HOH . 
F 5 HOH A 68 468 620 HOH HOH . 
F 5 HOH A 69 469 405 HOH HOH . 
F 5 HOH A 70 470 573 HOH HOH . 
F 5 HOH A 71 471 556 HOH HOH . 
F 5 HOH A 72 472 514 HOH HOH . 
F 5 HOH A 73 473 401 HOH HOH . 
F 5 HOH A 74 474 426 HOH HOH . 
F 5 HOH A 75 475 531 HOH HOH . 
F 5 HOH A 76 476 436 HOH HOH . 
F 5 HOH A 77 477 561 HOH HOH . 
F 5 HOH A 78 478 509 HOH HOH . 
F 5 HOH A 79 479 557 HOH HOH . 
F 5 HOH A 80 480 449 HOH HOH . 
F 5 HOH A 81 481 588 HOH HOH . 
F 5 HOH A 82 482 560 HOH HOH . 
F 5 HOH A 83 483 488 HOH HOH . 
F 5 HOH A 84 484 462 HOH HOH . 
F 5 HOH A 85 485 474 HOH HOH . 
F 5 HOH A 86 486 581 HOH HOH . 
F 5 HOH A 87 487 416 HOH HOH . 
F 5 HOH A 88 488 411 HOH HOH . 
F 5 HOH A 89 489 567 HOH HOH . 
F 5 HOH A 90 490 597 HOH HOH . 
F 5 HOH A 91 491 580 HOH HOH . 
F 5 HOH A 92 492 481 HOH HOH . 
F 5 HOH A 93 493 526 HOH HOH . 
F 5 HOH A 94 494 498 HOH HOH . 
F 5 HOH A 95 495 493 HOH HOH . 
F 5 HOH A 96 496 614 HOH HOH . 
F 5 HOH A 97 497 590 HOH HOH . 
F 5 HOH A 98 498 414 HOH HOH . 
F 5 HOH A 99 499 515 HOH HOH . 
F 5 HOH A 100 500 423 HOH HOH . 
F 5 HOH A 101 501 507 HOH HOH . 
F 5 HOH A 102 502 456 HOH HOH . 
F 5 HOH A 103 503 447 HOH HOH . 
F 5 HOH A 104 504 442 HOH HOH . 
F 5 HOH A 105 505 585 HOH HOH . 
F 5 HOH A 106 506 434 HOH HOH . 
F 5 HOH A 107 507 455 HOH HOH . 
F 5 HOH A 108 508 458 HOH HOH . 
F 5 HOH A 109 509 579 HOH HOH . 
F 5 HOH A 110 510 473 HOH HOH . 
F 5 HOH A 111 511 601 HOH HOH . 
F 5 HOH A 112 512 433 HOH HOH . 
F 5 HOH A 113 513 430 HOH HOH . 
F 5 HOH A 114 514 486 HOH HOH . 
F 5 HOH A 115 515 443 HOH HOH . 
F 5 HOH A 116 516 598 HOH HOH . 
F 5 HOH A 117 517 460 HOH HOH . 
F 5 HOH A 118 518 554 HOH HOH . 
F 5 HOH A 119 519 516 HOH HOH . 
F 5 HOH A 120 520 501 HOH HOH . 
F 5 HOH A 121 521 612 HOH HOH . 
F 5 HOH A 122 522 480 HOH HOH . 
F 5 HOH A 123 523 520 HOH HOH . 
F 5 HOH A 124 524 541 HOH HOH . 
F 5 HOH A 125 525 492 HOH HOH . 
F 5 HOH A 126 526 478 HOH HOH . 
F 5 HOH A 127 527 577 HOH HOH . 
F 5 HOH A 128 528 454 HOH HOH . 
F 5 HOH A 129 529 475 HOH HOH . 
F 5 HOH A 130 530 513 HOH HOH . 
F 5 HOH A 131 531 537 HOH HOH . 
F 5 HOH A 132 532 594 HOH HOH . 
F 5 HOH A 133 533 602 HOH HOH . 
F 5 HOH A 134 534 540 HOH HOH . 
F 5 HOH A 135 535 521 HOH HOH . 
F 5 HOH A 136 536 575 HOH HOH . 
F 5 HOH A 137 537 446 HOH HOH . 
F 5 HOH A 138 538 406 HOH HOH . 
F 5 HOH A 139 539 438 HOH HOH . 
F 5 HOH A 140 540 574 HOH HOH . 
F 5 HOH A 141 541 432 HOH HOH . 
F 5 HOH A 142 542 529 HOH HOH . 
F 5 HOH A 143 543 463 HOH HOH . 
F 5 HOH A 144 544 538 HOH HOH . 
F 5 HOH A 145 545 482 HOH HOH . 
F 5 HOH A 146 546 412 HOH HOH . 
F 5 HOH A 147 547 566 HOH HOH . 
F 5 HOH A 148 548 465 HOH HOH . 
F 5 HOH A 149 549 544 HOH HOH . 
F 5 HOH A 150 550 522 HOH HOH . 
F 5 HOH A 151 551 535 HOH HOH . 
F 5 HOH A 152 552 607 HOH HOH . 
F 5 HOH A 153 553 503 HOH HOH . 
F 5 HOH A 154 554 470 HOH HOH . 
F 5 HOH A 155 555 484 HOH HOH . 
F 5 HOH A 156 556 533 HOH HOH . 
F 5 HOH A 157 557 604 HOH HOH . 
F 5 HOH A 158 558 536 HOH HOH . 
F 5 HOH A 159 559 565 HOH HOH . 
F 5 HOH A 160 560 471 HOH HOH . 
F 5 HOH A 161 561 613 HOH HOH . 
F 5 HOH A 162 562 485 HOH HOH . 
F 5 HOH A 163 563 502 HOH HOH . 
F 5 HOH A 164 564 599 HOH HOH . 
F 5 HOH A 165 565 464 HOH HOH . 
F 5 HOH A 166 566 410 HOH HOH . 
F 5 HOH A 167 567 490 HOH HOH . 
F 5 HOH A 168 568 519 HOH HOH . 
F 5 HOH A 169 569 606 HOH HOH . 
F 5 HOH A 170 570 472 HOH HOH . 
F 5 HOH A 171 571 559 HOH HOH . 
F 5 HOH A 172 572 445 HOH HOH . 
F 5 HOH A 173 573 479 HOH HOH . 
F 5 HOH A 174 574 419 HOH HOH . 
F 5 HOH A 175 575 441 HOH HOH . 
F 5 HOH A 176 576 600 HOH HOH . 
F 5 HOH A 177 577 611 HOH HOH . 
F 5 HOH A 178 578 610 HOH HOH . 
F 5 HOH A 179 579 439 HOH HOH . 
F 5 HOH A 180 580 616 HOH HOH . 
F 5 HOH A 181 581 453 HOH HOH . 
F 5 HOH A 182 582 415 HOH HOH . 
F 5 HOH A 183 583 542 HOH HOH . 
F 5 HOH A 184 584 489 HOH HOH . 
F 5 HOH A 185 585 586 HOH HOH . 
F 5 HOH A 186 586 468 HOH HOH . 
F 5 HOH A 187 587 457 HOH HOH . 
F 5 HOH A 188 588 582 HOH HOH . 
F 5 HOH A 189 589 595 HOH HOH . 
F 5 HOH A 190 590 608 HOH HOH . 
F 5 HOH A 191 591 545 HOH HOH . 
F 5 HOH A 192 592 617 HOH HOH . 
F 5 HOH A 193 593 402 HOH HOH . 
F 5 HOH A 194 594 483 HOH HOH . 
F 5 HOH A 195 595 404 HOH HOH . 
F 5 HOH A 196 596 583 HOH HOH . 
F 5 HOH A 197 597 605 HOH HOH . 
F 5 HOH A 198 598 584 HOH HOH . 
F 5 HOH A 199 599 562 HOH HOH . 
F 5 HOH A 200 600 589 HOH HOH . 
F 5 HOH A 201 601 592 HOH HOH . 
F 5 HOH A 202 602 570 HOH HOH . 
F 5 HOH A 203 603 508 HOH HOH . 
F 5 HOH A 204 604 487 HOH HOH . 
F 5 HOH A 205 605 499 HOH HOH . 
F 5 HOH A 206 606 550 HOH HOH . 
F 5 HOH A 207 607 563 HOH HOH . 
F 5 HOH A 208 608 517 HOH HOH . 
F 5 HOH A 209 609 528 HOH HOH . 
F 5 HOH A 210 610 578 HOH HOH . 
F 5 HOH A 211 611 618 HOH HOH . 
F 5 HOH A 212 612 568 HOH HOH . 
F 5 HOH A 213 613 491 HOH HOH . 
F 5 HOH A 214 614 532 HOH HOH . 
F 5 HOH A 215 615 546 HOH HOH . 
F 5 HOH A 216 616 525 HOH HOH . 
F 5 HOH A 217 617 569 HOH HOH . 
F 5 HOH A 218 618 506 HOH HOH . 
F 5 HOH A 219 619 558 HOH HOH . 
F 5 HOH A 220 620 523 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 CYT . . . E 4 -17.296 14.739 -3.192 1 39.48 ? N3 CYT 304 A 1 
HETATM 2 C C4 CYT . . . E 4 -17.33 14.997 -1.878 1 24.49 ? C4 CYT 304 A 1 
HETATM 3 N N1 CYT . . . E 4 -15.042 15.425 -3.296 1 36.37 ? N1 CYT 304 A 1 
HETATM 4 C C2 CYT . . . E 4 -16.163 14.952 -3.888 1 39.78 ? C2 CYT 304 A 1 
HETATM 5 O O2 CYT . . . E 4 -16.132 14.714 -5.11 1 40.79 ? O2 CYT 304 A 1 
HETATM 6 N N4 CYT . . . E 4 -18.434 14.801 -1.116 1 24.91 ? N4 CYT 304 A 1 
HETATM 7 C C5 CYT . . . E 4 -16.187 15.469 -1.263 1 29.49 ? C5 CYT 304 A 1 
HETATM 8 C C6 CYT . . . E 4 -15.034 15.689 -1.987 1 28.99 ? C6 CYT 304 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#