data_4ZTL # _model_server_result.job_id B4H4so6hNFknF8m8tktF2w _model_server_result.datetime_utc '2024-11-29 02:14:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ztl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4ZTL # _exptl.entry_id 4ZTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.509 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,3R,5R)-3-{[5-(1,3-benzothiazol-2-yl)-2-(propylamino)pyrimidin-4-yl]amino}-5-(hydroxymethyl)cyclopentane-1,2-diol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.93 _cell.angle_gamma 90 _cell.entry_id 4ZTL _cell.length_a 145.18 _cell.length_b 139.39 _cell.length_c 87.98 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TPO 183 A TPO 342 1_555 A N VAL 184 A VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C MET 185 A MET 344 1_555 A N TPO 186 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 A C TPO 186 A TPO 345 1_555 A N SEP 187 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C SEP 187 A SEP 346 1_555 A N ARG 188 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale5 B C GLN 182 B GLN 341 1_555 B N TPO 183 B TPO 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale6 B C TPO 183 B TPO 342 1_555 B N VAL 184 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale7 B C MET 185 B MET 344 1_555 B N TPO 186 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale8 B C TPO 186 B TPO 345 1_555 B N SEP 187 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 B C SEP 187 B SEP 346 1_555 B N ARG 188 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale10 C C TPO 183 C TPO 342 1_555 C N VAL 184 C VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale11 C C MET 185 C MET 344 1_555 C N TPO 186 C TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale12 C C TPO 186 C TPO 345 1_555 C N SEP 187 C SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 C C SEP 187 C SEP 346 1_555 C N ARG 188 C ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale14 D C TPO 183 D TPO 342 1_555 D N VAL 184 D VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale15 D C MET 185 D MET 344 1_555 D N TPO 186 D TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale16 D C TPO 186 D TPO 345 1_555 D N SEP 187 D SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 D C SEP 187 D SEP 346 1_555 D N ARG 188 D ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C20 H25 N5 O3 S' _chem_comp.formula_weight 415.509 _chem_comp.id 4S1 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,3R,5R)-3-{[5-(1,3-benzothiazol-2-yl)-2-(propylamino)pyrimidin-4-yl]amino}-5-(hydroxymethyl)cyclopentane-1,2-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 4S1 doub 1 n y C27 C26 4S1 sing 2 n y C28 C29 4S1 sing 3 n y C26 C23 4S1 doub 4 n y C29 C24 4S1 doub 5 n y C23 C24 4S1 sing 6 n y C23 S22 4S1 sing 7 n y C24 N25 4S1 sing 8 n y S22 C09 4S1 sing 9 n y N25 C09 4S1 doub 10 n y C09 C06 4S1 sing 11 n n O18 C17 4S1 sing 12 n n C06 C05 4S1 doub 13 n y C06 C01 4S1 sing 14 n y C17 C13 4S1 sing 15 n n C05 N04 4S1 sing 16 n y N07 C01 4S1 sing 17 n n N07 C10 4S1 sing 18 n n C01 N02 4S1 doub 19 n y C14 C13 4S1 sing 20 n n C14 C10 4S1 sing 21 n n N04 C03 4S1 doub 22 n y C13 C12 4S1 sing 23 n n C10 C11 4S1 sing 24 n n N02 C03 4S1 sing 25 n y C03 N08 4S1 sing 26 n n C12 C11 4S1 sing 27 n n C12 O16 4S1 sing 28 n n C11 O15 4S1 sing 29 n n N08 C19 4S1 sing 30 n n C19 C20 4S1 sing 31 n n C20 C21 4S1 sing 32 n n C05 H1 4S1 sing 33 n n N07 H2 4S1 sing 34 n n N08 H3 4S1 sing 35 n n C10 H4 4S1 sing 36 n n C11 H5 4S1 sing 37 n n C12 H6 4S1 sing 38 n n C13 H7 4S1 sing 39 n n C14 H8 4S1 sing 40 n n C14 H9 4S1 sing 41 n n O15 H10 4S1 sing 42 n n O16 H11 4S1 sing 43 n n C17 H12 4S1 sing 44 n n C17 H13 4S1 sing 45 n n O18 H14 4S1 sing 46 n n C19 H15 4S1 sing 47 n n C19 H16 4S1 sing 48 n n C20 H17 4S1 sing 49 n n C20 H18 4S1 sing 50 n n C21 H19 4S1 sing 51 n n C21 H20 4S1 sing 52 n n C21 H21 4S1 sing 53 n n C26 H22 4S1 sing 54 n n C27 H23 4S1 sing 55 n n C28 H24 4S1 sing 56 n n C29 H25 4S1 sing 57 n n # _atom_sites.entry_id 4ZTL _atom_sites.fract_transf_matrix[1][1] 0.006888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 4S1 A 1 501 1 4S1 SCH . F 2 4S1 B 1 501 2 4S1 SCH . G 2 4S1 C 1 501 3 4S1 SCH . H 2 4S1 D 1 501 4 4S1 SCH . I 3 HOH A 1 601 90 HOH WAT . I 3 HOH A 2 602 85 HOH WAT . I 3 HOH A 3 603 17 HOH WAT . I 3 HOH A 4 604 51 HOH WAT . I 3 HOH A 5 605 39 HOH WAT . I 3 HOH A 6 606 4 HOH WAT . I 3 HOH A 7 607 77 HOH WAT . I 3 HOH A 8 608 67 HOH WAT . I 3 HOH A 9 609 13 HOH WAT . I 3 HOH A 10 610 9 HOH WAT . I 3 HOH A 11 611 79 HOH WAT . I 3 HOH A 12 612 11 HOH WAT . I 3 HOH A 13 613 97 HOH WAT . I 3 HOH A 14 614 87 HOH WAT . I 3 HOH A 15 615 98 HOH WAT . I 3 HOH A 16 616 83 HOH WAT . I 3 HOH A 17 617 55 HOH WAT . I 3 HOH A 18 618 73 HOH WAT . I 3 HOH A 19 619 64 HOH WAT . J 3 HOH B 1 601 91 HOH WAT . J 3 HOH B 2 602 106 HOH WAT . J 3 HOH B 3 603 29 HOH WAT . J 3 HOH B 4 604 70 HOH WAT . J 3 HOH B 5 605 30 HOH WAT . J 3 HOH B 6 606 24 HOH WAT . J 3 HOH B 7 607 69 HOH WAT . J 3 HOH B 8 608 76 HOH WAT . J 3 HOH B 9 609 15 HOH WAT . J 3 HOH B 10 610 52 HOH WAT . J 3 HOH B 11 611 26 HOH WAT . J 3 HOH B 12 612 68 HOH WAT . J 3 HOH B 13 613 47 HOH WAT . J 3 HOH B 14 614 5 HOH WAT . J 3 HOH B 15 615 16 HOH WAT . J 3 HOH B 16 616 71 HOH WAT . J 3 HOH B 17 617 84 HOH WAT . J 3 HOH B 18 618 104 HOH WAT . J 3 HOH B 19 619 89 HOH WAT . K 3 HOH C 1 601 94 HOH WAT . K 3 HOH C 2 602 107 HOH WAT . K 3 HOH C 3 603 2 HOH WAT . K 3 HOH C 4 604 37 HOH WAT . K 3 HOH C 5 605 49 HOH WAT . K 3 HOH C 6 606 38 HOH WAT . K 3 HOH C 7 607 46 HOH WAT . K 3 HOH C 8 608 54 HOH WAT . K 3 HOH C 9 609 7 HOH WAT . K 3 HOH C 10 610 34 HOH WAT . K 3 HOH C 11 611 28 HOH WAT . K 3 HOH C 12 612 1 HOH WAT . K 3 HOH C 13 613 21 HOH WAT . K 3 HOH C 14 614 53 HOH WAT . K 3 HOH C 15 615 63 HOH WAT . K 3 HOH C 16 616 65 HOH WAT . K 3 HOH C 17 617 99 HOH WAT . K 3 HOH C 18 618 6 HOH WAT . K 3 HOH C 19 619 93 HOH WAT . K 3 HOH C 20 620 100 HOH WAT . K 3 HOH C 21 621 96 HOH WAT . K 3 HOH C 22 622 103 HOH WAT . K 3 HOH C 23 623 48 HOH WAT . K 3 HOH C 24 624 33 HOH WAT . K 3 HOH C 25 625 35 HOH WAT . K 3 HOH C 26 626 18 HOH WAT . K 3 HOH C 27 627 62 HOH WAT . K 3 HOH C 28 628 92 HOH WAT . K 3 HOH C 29 629 36 HOH WAT . K 3 HOH C 30 630 22 HOH WAT . K 3 HOH C 31 631 43 HOH WAT . K 3 HOH C 32 632 42 HOH WAT . K 3 HOH C 33 633 56 HOH WAT . K 3 HOH C 34 634 58 HOH WAT . K 3 HOH C 35 635 74 HOH WAT . L 3 HOH D 1 601 50 HOH WAT . L 3 HOH D 2 602 108 HOH WAT . L 3 HOH D 3 603 80 HOH WAT . L 3 HOH D 4 604 32 HOH WAT . L 3 HOH D 5 605 81 HOH WAT . L 3 HOH D 6 606 19 HOH WAT . L 3 HOH D 7 607 60 HOH WAT . L 3 HOH D 8 608 12 HOH WAT . L 3 HOH D 9 609 25 HOH WAT . L 3 HOH D 10 610 10 HOH WAT . L 3 HOH D 11 611 27 HOH WAT . L 3 HOH D 12 612 8 HOH WAT . L 3 HOH D 13 613 31 HOH WAT . L 3 HOH D 14 614 78 HOH WAT . L 3 HOH D 15 615 3 HOH WAT . L 3 HOH D 16 616 14 HOH WAT . L 3 HOH D 17 617 61 HOH WAT . L 3 HOH D 18 618 86 HOH WAT . L 3 HOH D 19 619 72 HOH WAT . L 3 HOH D 20 620 66 HOH WAT . L 3 HOH D 21 621 40 HOH WAT . L 3 HOH D 22 622 105 HOH WAT . L 3 HOH D 23 623 41 HOH WAT . L 3 HOH D 24 624 82 HOH WAT . L 3 HOH D 25 625 102 HOH WAT . L 3 HOH D 26 626 57 HOH WAT . L 3 HOH D 27 627 20 HOH WAT . L 3 HOH D 28 628 88 HOH WAT . L 3 HOH D 29 629 23 HOH WAT . L 3 HOH D 30 630 75 HOH WAT . L 3 HOH D 31 631 95 HOH WAT . L 3 HOH D 32 632 45 HOH WAT . L 3 HOH D 33 633 101 HOH WAT . L 3 HOH D 34 634 44 HOH WAT . L 3 HOH D 35 635 59 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 4S1 . . . F 2 0.388 -8.826 31.858 1 73.9 ? C01 4S1 501 B 1 HETATM 2 N N02 4S1 . . . F 2 1.276 -8.221 30.991 1 71.34 ? N02 4S1 501 B 1 HETATM 3 C C03 4S1 . . . F 2 1.511 -6.925 31.13 1 71.51 ? C03 4S1 501 B 1 HETATM 4 N N04 4S1 . . . F 2 0.948 -6.123 32.083 1 72.29 ? N04 4S1 501 B 1 HETATM 5 C C05 4S1 . . . F 2 0.044 -6.679 32.987 1 70.8 ? C05 4S1 501 B 1 HETATM 6 C C06 4S1 . . . F 2 -0.339 -8.068 32.883 1 72.9 ? C06 4S1 501 B 1 HETATM 7 N N07 4S1 . . . F 2 0.196 -10.171 31.638 1 75.6 ? N07 4S1 501 B 1 HETATM 8 N N08 4S1 . . . F 2 2.395 -6.357 30.228 1 73.08 ? N08 4S1 501 B 1 HETATM 9 C C09 4S1 . . . F 2 -1.217 -8.736 33.881 1 75.25 ? C09 4S1 501 B 1 HETATM 10 C C10 4S1 . . . F 2 0.872 -11.037 30.643 1 76.46 ? C10 4S1 501 B 1 HETATM 11 C C11 4S1 . . . F 2 2.328 -11.428 31.073 1 76.39 ? C11 4S1 501 B 1 HETATM 12 C C12 4S1 . . . F 2 2.1 -12.713 31.952 1 76.93 ? C12 4S1 501 B 1 HETATM 13 C C13 4S1 . . . F 2 0.774 -13.355 31.484 1 81.14 ? C13 4S1 501 B 1 HETATM 14 C C14 4S1 . . . F 2 0.143 -12.385 30.45 1 78.23 ? C14 4S1 501 B 1 HETATM 15 O O15 4S1 . . . F 2 3.207 -11.675 29.949 1 75.96 ? O15 4S1 501 B 1 HETATM 16 O O16 4S1 . . . F 2 3.103 -13.713 31.932 1 73.68 ? O16 4S1 501 B 1 HETATM 17 C C17 4S1 . . . F 2 -0.182 -13.635 32.663 1 85.13 ? C17 4S1 501 B 1 HETATM 18 O O18 4S1 . . . F 2 -1.194 -14.492 32.147 1 88.16 ? O18 4S1 501 B 1 HETATM 19 C C19 4S1 . . . F 2 2.982 -6.907 28.993 1 73.67 ? C19 4S1 501 B 1 HETATM 20 C C20 4S1 . . . F 2 3.832 -5.816 28.309 1 74.78 ? C20 4S1 501 B 1 HETATM 21 C C21 4S1 . . . F 2 4.405 -6.219 26.947 1 75.36 ? C21 4S1 501 B 1 HETATM 22 S S22 4S1 . . . F 2 -1.615 -7.948 35.446 1 75.39 ? S22 4S1 501 B 1 HETATM 23 C C23 4S1 . . . F 2 -2.387 -9.429 35.957 1 73.33 ? C23 4S1 501 B 1 HETATM 24 C C24 4S1 . . . F 2 -2.297 -10.434 34.934 1 74.04 ? C24 4S1 501 B 1 HETATM 25 N N25 4S1 . . . F 2 -1.6 -10.036 33.794 1 76.44 ? N25 4S1 501 B 1 HETATM 26 C C26 4S1 . . . F 2 -3.048 -9.675 37.168 1 72.48 ? C26 4S1 501 B 1 HETATM 27 C C27 4S1 . . . F 2 -3.645 -10.949 37.383 1 73.95 ? C27 4S1 501 B 1 HETATM 28 C C28 4S1 . . . F 2 -3.582 -11.98 36.382 1 73.59 ? C28 4S1 501 B 1 HETATM 29 C C29 4S1 . . . F 2 -2.89 -11.716 35.164 1 73.36 ? C29 4S1 501 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #