data_4ZTM # _model_server_result.job_id o_MFggHirtSyZO4equtofg _model_server_result.datetime_utc '2024-12-26 09:55:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ztm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 4ZTM # _exptl.entry_id 4ZTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(1,3-benzothiazol-2-yl)-2-(cyclopropylamino)-6-{[(1R,2S,3R,4R)-2,3-dihydroxy-4-(hydroxymethyl)cyclopentyl]amino}pyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.26 _cell.angle_gamma 90 _cell.entry_id 4ZTM _cell.length_a 141.93 _cell.length_b 139.25 _cell.length_c 87.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 182 A GLN 341 1_555 A N TPO 183 A TPO 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C TPO 183 A TPO 342 1_555 A N VAL 184 A VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C MET 185 A MET 344 1_555 A N TPO 186 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C TPO 186 A TPO 345 1_555 A N SEP 187 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C SEP 187 A SEP 346 1_555 A N ARG 188 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale6 B C GLN 182 B GLN 341 1_555 B N TPO 183 B TPO 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 B C TPO 183 B TPO 342 1_555 B N VAL 184 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 B C MET 185 B MET 344 1_555 B N TPO 186 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 B C TPO 186 B TPO 345 1_555 B N SEP 187 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 B C SEP 187 B SEP 346 1_555 B N ARG 188 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale11 C C TPO 183 C TPO 342 1_555 C N VAL 184 C VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale12 C C MET 185 C MET 344 1_555 C N TPO 186 C TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 C C TPO 186 C TPO 345 1_555 C N SEP 187 C SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 C C SEP 187 C SEP 346 1_555 C N ARG 188 C ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale15 D C TPO 183 D TPO 342 1_555 D N VAL 184 D VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale16 D C MET 185 D MET 344 1_555 D N TPO 186 D TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale17 D C TPO 186 D TPO 345 1_555 D N SEP 187 D SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale18 D C SEP 187 D SEP 346 1_555 D N ARG 188 D ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? # _chem_comp.formula 'C20 H23 N5 O4 S' _chem_comp.formula_weight 429.493 _chem_comp.id 4S2 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(1,3-benzothiazol-2-yl)-2-(cyclopropylamino)-6-{[(1R,2S,3R,4R)-2,3-dihydroxy-4-(hydroxymethyl)cyclopentyl]amino}pyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C29 4S2 doub 1 n y C28 C27 4S2 sing 2 n y C29 C30 4S2 sing 3 n y C27 C24 4S2 doub 4 n y C30 C25 4S2 doub 5 n y C24 C25 4S2 sing 6 n y C24 S23 4S2 sing 7 n y C25 N26 4S2 sing 8 n y S23 C10 4S2 sing 9 n y N26 C10 4S2 doub 10 n y C10 C06 4S2 sing 11 n n O09 C05 4S2 doub 12 n n C06 C05 4S2 sing 13 n n C06 C01 4S2 doub 14 n n C05 N04 4S2 sing 15 n n N07 C01 4S2 sing 16 n n N07 C11 4S2 sing 17 n n C01 N02 4S2 sing 18 n n C15 C11 4S2 sing 19 n n C15 C14 4S2 sing 20 n n C11 C12 4S2 sing 21 n n N04 C03 4S2 sing 22 n n O19 C18 4S2 sing 23 n n N02 C03 4S2 doub 24 n n C14 C18 4S2 sing 25 n n C14 C13 4S2 sing 26 n n C03 N08 4S2 sing 27 n n C12 C13 4S2 sing 28 n n C12 O16 4S2 sing 29 n n C13 O17 4S2 sing 30 n n N08 C20 4S2 sing 31 n n C20 C21 4S2 sing 32 n n C20 C22 4S2 sing 33 n n C21 C22 4S2 sing 34 n n N04 H1 4S2 sing 35 n n N08 H3 4S2 sing 36 n n C11 H4 4S2 sing 37 n n C12 H5 4S2 sing 38 n n C13 H6 4S2 sing 39 n n C14 H7 4S2 sing 40 n n C15 H8 4S2 sing 41 n n C15 H9 4S2 sing 42 n n O16 H10 4S2 sing 43 n n O17 H11 4S2 sing 44 n n C18 H12 4S2 sing 45 n n C18 H13 4S2 sing 46 n n O19 H14 4S2 sing 47 n n C20 H15 4S2 sing 48 n n C21 H16 4S2 sing 49 n n C21 H17 4S2 sing 50 n n C22 H18 4S2 sing 51 n n C22 H19 4S2 sing 52 n n C27 H20 4S2 sing 53 n n C28 H21 4S2 sing 54 n n C29 H22 4S2 sing 55 n n C30 H23 4S2 sing 56 n n N07 H2 4S2 sing 57 n n # _atom_sites.entry_id 4ZTM _atom_sites.fract_transf_matrix[1][1] 0.007046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004799 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 4S2 A 1 501 1 4S2 SCH . F 2 4S2 B 1 501 2 4S2 SCH . G 2 4S2 C 1 501 3 4S2 SCH . H 2 4S2 D 1 501 4 4S2 SCH . I 3 HOH A 1 601 102 HOH WAT . I 3 HOH A 2 602 10 HOH WAT . I 3 HOH A 3 603 12 HOH WAT . I 3 HOH A 4 604 55 HOH WAT . I 3 HOH A 5 605 45 HOH WAT . I 3 HOH A 6 606 39 HOH WAT . I 3 HOH A 7 607 49 HOH WAT . I 3 HOH A 8 608 37 HOH WAT . I 3 HOH A 9 609 30 HOH WAT . I 3 HOH A 10 610 78 HOH WAT . I 3 HOH A 11 611 80 HOH WAT . I 3 HOH A 12 612 96 HOH WAT . I 3 HOH A 13 613 26 HOH WAT . I 3 HOH A 14 614 17 HOH WAT . I 3 HOH A 15 615 20 HOH WAT . I 3 HOH A 16 616 76 HOH WAT . I 3 HOH A 17 617 68 HOH WAT . I 3 HOH A 18 618 91 HOH WAT . I 3 HOH A 19 619 89 HOH WAT . I 3 HOH A 20 620 6 HOH WAT . I 3 HOH A 21 621 7 HOH WAT . I 3 HOH A 22 622 62 HOH WAT . J 3 HOH B 1 601 53 HOH WAT . J 3 HOH B 2 602 21 HOH WAT . J 3 HOH B 3 603 59 HOH WAT . J 3 HOH B 4 604 74 HOH WAT . J 3 HOH B 5 605 9 HOH WAT . J 3 HOH B 6 606 47 HOH WAT . J 3 HOH B 7 607 70 HOH WAT . J 3 HOH B 8 608 58 HOH WAT . J 3 HOH B 9 609 95 HOH WAT . J 3 HOH B 10 610 18 HOH WAT . J 3 HOH B 11 611 73 HOH WAT . J 3 HOH B 12 612 33 HOH WAT . J 3 HOH B 13 613 61 HOH WAT . J 3 HOH B 14 614 42 HOH WAT . J 3 HOH B 15 615 52 HOH WAT . J 3 HOH B 16 616 19 HOH WAT . J 3 HOH B 17 617 31 HOH WAT . J 3 HOH B 18 618 36 HOH WAT . J 3 HOH B 19 619 66 HOH WAT . J 3 HOH B 20 620 28 HOH WAT . J 3 HOH B 21 621 83 HOH WAT . J 3 HOH B 22 622 79 HOH WAT . J 3 HOH B 23 623 87 HOH WAT . K 3 HOH C 1 601 103 HOH WAT . K 3 HOH C 2 602 1 HOH WAT . K 3 HOH C 3 603 2 HOH WAT . K 3 HOH C 4 604 86 HOH WAT . K 3 HOH C 5 605 105 HOH WAT . K 3 HOH C 6 606 41 HOH WAT . K 3 HOH C 7 607 84 HOH WAT . K 3 HOH C 8 608 25 HOH WAT . K 3 HOH C 9 609 44 HOH WAT . K 3 HOH C 10 610 72 HOH WAT . K 3 HOH C 11 611 3 HOH WAT . K 3 HOH C 12 612 11 HOH WAT . K 3 HOH C 13 613 27 HOH WAT . K 3 HOH C 14 614 60 HOH WAT . K 3 HOH C 15 615 50 HOH WAT . K 3 HOH C 16 616 64 HOH WAT . K 3 HOH C 17 617 99 HOH WAT . K 3 HOH C 18 618 48 HOH WAT . K 3 HOH C 19 619 34 HOH WAT . K 3 HOH C 20 620 63 HOH WAT . K 3 HOH C 21 621 40 HOH WAT . K 3 HOH C 22 622 69 HOH WAT . K 3 HOH C 23 623 71 HOH WAT . K 3 HOH C 24 624 22 HOH WAT . K 3 HOH C 25 625 15 HOH WAT . K 3 HOH C 26 626 32 HOH WAT . K 3 HOH C 27 627 75 HOH WAT . K 3 HOH C 28 628 29 HOH WAT . K 3 HOH C 29 629 94 HOH WAT . L 3 HOH D 1 601 56 HOH WAT . L 3 HOH D 2 602 51 HOH WAT . L 3 HOH D 3 603 4 HOH WAT . L 3 HOH D 4 604 82 HOH WAT . L 3 HOH D 5 605 24 HOH WAT . L 3 HOH D 6 606 54 HOH WAT . L 3 HOH D 7 607 65 HOH WAT . L 3 HOH D 8 608 104 HOH WAT . L 3 HOH D 9 609 77 HOH WAT . L 3 HOH D 10 610 93 HOH WAT . L 3 HOH D 11 611 57 HOH WAT . L 3 HOH D 12 612 14 HOH WAT . L 3 HOH D 13 613 97 HOH WAT . L 3 HOH D 14 614 16 HOH WAT . L 3 HOH D 15 615 5 HOH WAT . L 3 HOH D 16 616 85 HOH WAT . L 3 HOH D 17 617 46 HOH WAT . L 3 HOH D 18 618 23 HOH WAT . L 3 HOH D 19 619 8 HOH WAT . L 3 HOH D 20 620 100 HOH WAT . L 3 HOH D 21 621 13 HOH WAT . L 3 HOH D 22 622 98 HOH WAT . L 3 HOH D 23 623 35 HOH WAT . L 3 HOH D 24 624 67 HOH WAT . L 3 HOH D 25 625 92 HOH WAT . L 3 HOH D 26 626 81 HOH WAT . L 3 HOH D 27 627 88 HOH WAT . L 3 HOH D 28 628 90 HOH WAT . L 3 HOH D 29 629 38 HOH WAT . L 3 HOH D 30 630 43 HOH WAT . L 3 HOH D 31 631 101 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 4S2 . . . G 2 38.005 -9.878 19.326 1 64.59 ? C01 4S2 501 C 1 HETATM 2 N N02 4S2 . . . G 2 37.106 -9.432 20.353 1 63.42 ? N02 4S2 501 C 1 HETATM 3 C C03 4S2 . . . G 2 36.867 -8.157 20.555 1 60.66 ? C03 4S2 501 C 1 HETATM 4 N N04 4S2 . . . G 2 37.512 -7.197 19.747 1 57.89 ? N04 4S2 501 C 1 HETATM 5 C C05 4S2 . . . G 2 38.394 -7.506 18.714 1 57.87 ? C05 4S2 501 C 1 HETATM 6 C C06 4S2 . . . G 2 38.671 -8.967 18.47 1 59.08 ? C06 4S2 501 C 1 HETATM 7 N N07 4S2 . . . G 2 38.127 -11.273 19.258 1 71.05 ? N07 4S2 501 C 1 HETATM 8 N N08 4S2 . . . G 2 36.014 -7.717 21.551 1 61.84 ? N08 4S2 501 C 1 HETATM 9 O O09 4S2 . . . G 2 38.912 -6.595 18.041 1 56.75 ? O09 4S2 501 C 1 HETATM 10 C C10 4S2 . . . G 2 39.581 -9.406 17.351 1 54.94 ? C10 4S2 501 C 1 HETATM 11 C C11 4S2 . . . G 2 37.852 -12.363 20.184 1 79.11 ? C11 4S2 501 C 1 HETATM 12 C C12 4S2 . . . G 2 36.389 -12.448 20.632 1 82.86 ? C12 4S2 501 C 1 HETATM 13 C C13 4S2 . . . G 2 36.17 -13.945 21.021 1 85 ? C13 4S2 501 C 1 HETATM 14 C C14 4S2 . . . G 2 37.379 -14.759 20.449 1 85.02 ? C14 4S2 501 C 1 HETATM 15 C C15 4S2 . . . G 2 38.083 -13.734 19.544 1 82.82 ? C15 4S2 501 C 1 HETATM 16 O O16 4S2 . . . G 2 36.232 -11.631 21.779 1 84.83 ? O16 4S2 501 C 1 HETATM 17 O O17 4S2 . . . G 2 35.783 -14.206 22.413 1 86.12 ? O17 4S2 501 C 1 HETATM 18 C C18 4S2 . . . G 2 37.021 -16.066 19.639 1 86.52 ? C18 4S2 501 C 1 HETATM 19 O O19 4S2 . . . G 2 37.951 -17.166 19.786 1 86.87 ? O19 4S2 501 C 1 HETATM 20 C C20 4S2 . . . G 2 35.79 -6.353 22.028 1 65.94 ? C20 4S2 501 C 1 HETATM 21 C C21 4S2 . . . G 2 35.819 -5.975 23.508 1 66.67 ? C21 4S2 501 C 1 HETATM 22 C C22 4S2 . . . G 2 34.496 -6.079 22.763 1 67.44 ? C22 4S2 501 C 1 HETATM 23 S S23 4S2 . . . G 2 40.072 -8.393 15.952 1 53.29 ? S23 4S2 501 C 1 HETATM 24 C C24 4S2 . . . G 2 40.794 -9.797 15.204 1 50.57 ? C24 4S2 501 C 1 HETATM 25 C C25 4S2 . . . G 2 40.654 -10.939 16.066 1 51.05 ? C25 4S2 501 C 1 HETATM 26 N N26 4S2 . . . G 2 39.966 -10.7 17.247 1 53.83 ? N26 4S2 501 C 1 HETATM 27 C C27 4S2 . . . G 2 41.379 -9.912 13.929 1 48.9 ? C27 4S2 501 C 1 HETATM 28 C C28 4S2 . . . G 2 41.865 -11.168 13.477 1 47.98 ? C28 4S2 501 C 1 HETATM 29 C C29 4S2 . . . G 2 41.753 -12.306 14.317 1 50.11 ? C29 4S2 501 C 1 HETATM 30 C C30 4S2 . . . G 2 41.14 -12.199 15.608 1 50.17 ? C30 4S2 501 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #