data_4ZV1 # _model_server_result.job_id jP3TXM-h_ShU9B7D6qQBeA _model_server_result.datetime_utc '2024-11-26 18:59:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4ZV1 # _exptl.entry_id 4ZV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZV1 _cell.length_a 41.46 _cell.length_b 60.41 _cell.length_c 103.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 4ZV1 _atom_sites.fract_transf_matrix[1][1] 0.02412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARG A 1 301 234 ARG ARG . C 3 HOH A 1 401 458 HOH HOH . C 3 HOH A 2 402 416 HOH HOH . C 3 HOH A 3 403 478 HOH HOH . C 3 HOH A 4 404 346 HOH HOH . C 3 HOH A 5 405 546 HOH HOH . C 3 HOH A 6 406 517 HOH HOH . C 3 HOH A 7 407 556 HOH HOH . C 3 HOH A 8 408 411 HOH HOH . C 3 HOH A 9 409 382 HOH HOH . C 3 HOH A 10 410 317 HOH HOH . C 3 HOH A 11 411 319 HOH HOH . C 3 HOH A 12 412 420 HOH HOH . C 3 HOH A 13 413 514 HOH HOH . C 3 HOH A 14 414 249 HOH HOH . C 3 HOH A 15 415 493 HOH HOH . C 3 HOH A 16 416 505 HOH HOH . C 3 HOH A 17 417 568 HOH HOH . C 3 HOH A 18 418 399 HOH HOH . C 3 HOH A 19 419 449 HOH HOH . C 3 HOH A 20 420 421 HOH HOH . C 3 HOH A 21 421 507 HOH HOH . C 3 HOH A 22 422 564 HOH HOH . C 3 HOH A 23 423 435 HOH HOH . C 3 HOH A 24 424 360 HOH HOH . C 3 HOH A 25 425 477 HOH HOH . C 3 HOH A 26 426 273 HOH HOH . C 3 HOH A 27 427 312 HOH HOH . C 3 HOH A 28 428 488 HOH HOH . C 3 HOH A 29 429 571 HOH HOH . C 3 HOH A 30 430 445 HOH HOH . C 3 HOH A 31 431 497 HOH HOH . C 3 HOH A 32 432 301 HOH HOH . C 3 HOH A 33 433 534 HOH HOH . C 3 HOH A 34 434 315 HOH HOH . C 3 HOH A 35 435 370 HOH HOH . C 3 HOH A 36 436 476 HOH HOH . C 3 HOH A 37 437 511 HOH HOH . C 3 HOH A 38 438 471 HOH HOH . C 3 HOH A 39 439 352 HOH HOH . C 3 HOH A 40 440 298 HOH HOH . C 3 HOH A 41 441 320 HOH HOH . C 3 HOH A 42 442 366 HOH HOH . C 3 HOH A 43 443 480 HOH HOH . C 3 HOH A 44 444 327 HOH HOH . C 3 HOH A 45 445 294 HOH HOH . C 3 HOH A 46 446 483 HOH HOH . C 3 HOH A 47 447 508 HOH HOH . C 3 HOH A 48 448 405 HOH HOH . C 3 HOH A 49 449 260 HOH HOH . C 3 HOH A 50 450 539 HOH HOH . C 3 HOH A 51 451 269 HOH HOH . C 3 HOH A 52 452 494 HOH HOH . C 3 HOH A 53 453 283 HOH HOH . C 3 HOH A 54 454 402 HOH HOH . C 3 HOH A 55 455 355 HOH HOH . C 3 HOH A 56 456 462 HOH HOH . C 3 HOH A 57 457 454 HOH HOH . C 3 HOH A 58 458 255 HOH HOH . C 3 HOH A 59 459 380 HOH HOH . C 3 HOH A 60 460 326 HOH HOH . C 3 HOH A 61 461 371 HOH HOH . C 3 HOH A 62 462 345 HOH HOH . C 3 HOH A 63 463 256 HOH HOH . C 3 HOH A 64 464 460 HOH HOH . C 3 HOH A 65 465 562 HOH HOH . C 3 HOH A 66 466 372 HOH HOH . C 3 HOH A 67 467 302 HOH HOH . C 3 HOH A 68 468 240 HOH HOH . C 3 HOH A 69 469 559 HOH HOH . C 3 HOH A 70 470 548 HOH HOH . C 3 HOH A 71 471 329 HOH HOH . C 3 HOH A 72 472 354 HOH HOH . C 3 HOH A 73 473 447 HOH HOH . C 3 HOH A 74 474 485 HOH HOH . C 3 HOH A 75 475 509 HOH HOH . C 3 HOH A 76 476 356 HOH HOH . C 3 HOH A 77 477 321 HOH HOH . C 3 HOH A 78 478 286 HOH HOH . C 3 HOH A 79 479 367 HOH HOH . C 3 HOH A 80 480 381 HOH HOH . C 3 HOH A 81 481 241 HOH HOH . C 3 HOH A 82 482 436 HOH HOH . C 3 HOH A 83 483 422 HOH HOH . C 3 HOH A 84 484 512 HOH HOH . C 3 HOH A 85 485 252 HOH HOH . C 3 HOH A 86 486 555 HOH HOH . C 3 HOH A 87 487 358 HOH HOH . C 3 HOH A 88 488 242 HOH HOH . C 3 HOH A 89 489 268 HOH HOH . C 3 HOH A 90 490 261 HOH HOH . C 3 HOH A 91 491 245 HOH HOH . C 3 HOH A 92 492 314 HOH HOH . C 3 HOH A 93 493 282 HOH HOH . C 3 HOH A 94 494 394 HOH HOH . C 3 HOH A 95 495 364 HOH HOH . C 3 HOH A 96 496 570 HOH HOH . C 3 HOH A 97 497 332 HOH HOH . C 3 HOH A 98 498 248 HOH HOH . C 3 HOH A 99 499 250 HOH HOH . C 3 HOH A 100 500 303 HOH HOH . C 3 HOH A 101 501 244 HOH HOH . C 3 HOH A 102 502 521 HOH HOH . C 3 HOH A 103 503 270 HOH HOH . C 3 HOH A 104 504 251 HOH HOH . C 3 HOH A 105 505 396 HOH HOH . C 3 HOH A 106 506 362 HOH HOH . C 3 HOH A 107 507 444 HOH HOH . C 3 HOH A 108 508 465 HOH HOH . C 3 HOH A 109 509 254 HOH HOH . C 3 HOH A 110 510 316 HOH HOH . C 3 HOH A 111 511 569 HOH HOH . C 3 HOH A 112 512 243 HOH HOH . C 3 HOH A 113 513 322 HOH HOH . C 3 HOH A 114 514 502 HOH HOH . C 3 HOH A 115 515 388 HOH HOH . C 3 HOH A 116 516 266 HOH HOH . C 3 HOH A 117 517 310 HOH HOH . C 3 HOH A 118 518 448 HOH HOH . C 3 HOH A 119 519 278 HOH HOH . C 3 HOH A 120 520 378 HOH HOH . C 3 HOH A 121 521 280 HOH HOH . C 3 HOH A 122 522 441 HOH HOH . C 3 HOH A 123 523 439 HOH HOH . C 3 HOH A 124 524 306 HOH HOH . C 3 HOH A 125 525 428 HOH HOH . C 3 HOH A 126 526 357 HOH HOH . C 3 HOH A 127 527 467 HOH HOH . C 3 HOH A 128 528 272 HOH HOH . C 3 HOH A 129 529 451 HOH HOH . C 3 HOH A 130 530 299 HOH HOH . C 3 HOH A 131 531 237 HOH HOH . C 3 HOH A 132 532 415 HOH HOH . C 3 HOH A 133 533 368 HOH HOH . C 3 HOH A 134 534 373 HOH HOH . C 3 HOH A 135 535 281 HOH HOH . C 3 HOH A 136 536 311 HOH HOH . C 3 HOH A 137 537 257 HOH HOH . C 3 HOH A 138 538 289 HOH HOH . C 3 HOH A 139 539 296 HOH HOH . C 3 HOH A 140 540 375 HOH HOH . C 3 HOH A 141 541 258 HOH HOH . C 3 HOH A 142 542 344 HOH HOH . C 3 HOH A 143 543 341 HOH HOH . C 3 HOH A 144 544 489 HOH HOH . C 3 HOH A 145 545 403 HOH HOH . C 3 HOH A 146 546 496 HOH HOH . C 3 HOH A 147 547 334 HOH HOH . C 3 HOH A 148 548 446 HOH HOH . C 3 HOH A 149 549 456 HOH HOH . C 3 HOH A 150 550 275 HOH HOH . C 3 HOH A 151 551 495 HOH HOH . C 3 HOH A 152 552 423 HOH HOH . C 3 HOH A 153 553 276 HOH HOH . C 3 HOH A 154 554 350 HOH HOH . C 3 HOH A 155 555 333 HOH HOH . C 3 HOH A 156 556 262 HOH HOH . C 3 HOH A 157 557 297 HOH HOH . C 3 HOH A 158 558 404 HOH HOH . C 3 HOH A 159 559 300 HOH HOH . C 3 HOH A 160 560 479 HOH HOH . C 3 HOH A 161 561 295 HOH HOH . C 3 HOH A 162 562 285 HOH HOH . C 3 HOH A 163 563 383 HOH HOH . C 3 HOH A 164 564 484 HOH HOH . C 3 HOH A 165 565 307 HOH HOH . C 3 HOH A 166 566 308 HOH HOH . C 3 HOH A 167 567 384 HOH HOH . C 3 HOH A 168 568 361 HOH HOH . C 3 HOH A 169 569 293 HOH HOH . C 3 HOH A 170 570 491 HOH HOH . C 3 HOH A 171 571 359 HOH HOH . C 3 HOH A 172 572 437 HOH HOH . C 3 HOH A 173 573 406 HOH HOH . C 3 HOH A 174 574 442 HOH HOH . C 3 HOH A 175 575 498 HOH HOH . C 3 HOH A 176 576 542 HOH HOH . C 3 HOH A 177 577 325 HOH HOH . C 3 HOH A 178 578 557 HOH HOH . C 3 HOH A 179 579 565 HOH HOH . C 3 HOH A 180 580 288 HOH HOH . C 3 HOH A 181 581 265 HOH HOH . C 3 HOH A 182 582 487 HOH HOH . C 3 HOH A 183 583 347 HOH HOH . C 3 HOH A 184 584 419 HOH HOH . C 3 HOH A 185 585 432 HOH HOH . C 3 HOH A 186 586 348 HOH HOH . C 3 HOH A 187 587 424 HOH HOH . C 3 HOH A 188 588 492 HOH HOH . C 3 HOH A 189 589 342 HOH HOH . C 3 HOH A 190 590 523 HOH HOH . C 3 HOH A 191 591 377 HOH HOH . C 3 HOH A 192 592 291 HOH HOH . C 3 HOH A 193 593 313 HOH HOH . C 3 HOH A 194 594 551 HOH HOH . C 3 HOH A 195 595 453 HOH HOH . C 3 HOH A 196 596 284 HOH HOH . C 3 HOH A 197 597 433 HOH HOH . C 3 HOH A 198 598 324 HOH HOH . C 3 HOH A 199 599 292 HOH HOH . C 3 HOH A 200 600 343 HOH HOH . C 3 HOH A 201 601 323 HOH HOH . C 3 HOH A 202 602 267 HOH HOH . C 3 HOH A 203 603 264 HOH HOH . C 3 HOH A 204 604 466 HOH HOH . C 3 HOH A 205 605 544 HOH HOH . C 3 HOH A 206 606 349 HOH HOH . C 3 HOH A 207 607 464 HOH HOH . C 3 HOH A 208 608 239 HOH HOH . C 3 HOH A 209 609 429 HOH HOH . C 3 HOH A 210 610 379 HOH HOH . C 3 HOH A 211 611 417 HOH HOH . C 3 HOH A 212 612 473 HOH HOH . C 3 HOH A 213 613 469 HOH HOH . C 3 HOH A 214 614 431 HOH HOH . C 3 HOH A 215 615 567 HOH HOH . C 3 HOH A 216 616 553 HOH HOH . C 3 HOH A 217 617 427 HOH HOH . C 3 HOH A 218 618 430 HOH HOH . C 3 HOH A 219 619 336 HOH HOH . C 3 HOH A 220 620 520 HOH HOH . C 3 HOH A 221 621 528 HOH HOH . C 3 HOH A 222 622 522 HOH HOH . C 3 HOH A 223 623 572 HOH HOH . C 3 HOH A 224 624 393 HOH HOH . C 3 HOH A 225 625 519 HOH HOH . C 3 HOH A 226 626 500 HOH HOH . C 3 HOH A 227 627 541 HOH HOH . C 3 HOH A 228 628 550 HOH HOH . C 3 HOH A 229 629 309 HOH HOH . C 3 HOH A 230 630 413 HOH HOH . C 3 HOH A 231 631 374 HOH HOH . C 3 HOH A 232 632 287 HOH HOH . C 3 HOH A 233 633 392 HOH HOH . C 3 HOH A 234 634 481 HOH HOH . C 3 HOH A 235 635 389 HOH HOH . C 3 HOH A 236 636 533 HOH HOH . C 3 HOH A 237 637 538 HOH HOH . C 3 HOH A 238 638 397 HOH HOH . C 3 HOH A 239 639 529 HOH HOH . C 3 HOH A 240 640 516 HOH HOH . C 3 HOH A 241 641 426 HOH HOH . C 3 HOH A 242 642 400 HOH HOH . C 3 HOH A 243 643 305 HOH HOH . C 3 HOH A 244 644 537 HOH HOH . C 3 HOH A 245 645 330 HOH HOH . C 3 HOH A 246 646 486 HOH HOH . C 3 HOH A 247 647 540 HOH HOH . C 3 HOH A 248 648 506 HOH HOH . C 3 HOH A 249 649 552 HOH HOH . C 3 HOH A 250 650 532 HOH HOH . C 3 HOH A 251 651 524 HOH HOH . C 3 HOH A 252 652 331 HOH HOH . C 3 HOH A 253 653 385 HOH HOH . C 3 HOH A 254 654 545 HOH HOH . C 3 HOH A 255 655 527 HOH HOH . C 3 HOH A 256 656 279 HOH HOH . C 3 HOH A 257 657 418 HOH HOH . C 3 HOH A 258 658 391 HOH HOH . C 3 HOH A 259 659 263 HOH HOH . C 3 HOH A 260 660 328 HOH HOH . C 3 HOH A 261 661 353 HOH HOH . C 3 HOH A 262 662 401 HOH HOH . C 3 HOH A 263 663 554 HOH HOH . C 3 HOH A 264 664 253 HOH HOH . C 3 HOH A 265 665 408 HOH HOH . C 3 HOH A 266 666 440 HOH HOH . C 3 HOH A 267 667 304 HOH HOH . C 3 HOH A 268 668 560 HOH HOH . C 3 HOH A 269 669 513 HOH HOH . C 3 HOH A 270 670 339 HOH HOH . C 3 HOH A 271 671 558 HOH HOH . C 3 HOH A 272 672 543 HOH HOH . C 3 HOH A 273 673 482 HOH HOH . C 3 HOH A 274 674 438 HOH HOH . C 3 HOH A 275 675 530 HOH HOH . C 3 HOH A 276 676 470 HOH HOH . C 3 HOH A 277 677 499 HOH HOH . C 3 HOH A 278 678 443 HOH HOH . C 3 HOH A 279 679 566 HOH HOH . C 3 HOH A 280 680 563 HOH HOH . C 3 HOH A 281 681 387 HOH HOH . C 3 HOH A 282 682 515 HOH HOH . C 3 HOH A 283 683 526 HOH HOH . C 3 HOH A 284 684 425 HOH HOH . C 3 HOH A 285 685 474 HOH HOH . C 3 HOH A 286 686 461 HOH HOH . C 3 HOH A 287 687 271 HOH HOH . C 3 HOH A 288 688 549 HOH HOH . C 3 HOH A 289 689 365 HOH HOH . C 3 HOH A 290 690 407 HOH HOH . C 3 HOH A 291 691 277 HOH HOH . C 3 HOH A 292 692 547 HOH HOH . C 3 HOH A 293 693 452 HOH HOH . C 3 HOH A 294 694 457 HOH HOH . C 3 HOH A 295 695 351 HOH HOH . C 3 HOH A 296 696 475 HOH HOH . C 3 HOH A 297 697 409 HOH HOH . C 3 HOH A 298 698 369 HOH HOH . C 3 HOH A 299 699 338 HOH HOH . C 3 HOH A 300 700 463 HOH HOH . C 3 HOH A 301 701 504 HOH HOH . C 3 HOH A 302 702 290 HOH HOH . C 3 HOH A 303 703 274 HOH HOH . C 3 HOH A 304 704 337 HOH HOH . C 3 HOH A 305 705 535 HOH HOH . C 3 HOH A 306 706 561 HOH HOH . C 3 HOH A 307 707 503 HOH HOH . C 3 HOH A 308 708 525 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . B 2 3.182 -24.21 12.919 1 5.47 ? N ARG 301 A 1 HETATM 2 C CA ARG . . . B 2 3.668 -23.54 11.661 1 5.43 ? CA ARG 301 A 1 HETATM 3 C C ARG . . . B 2 4.961 -22.86 11.924 1 5.19 ? C ARG 301 A 1 HETATM 4 O O ARG . . . B 2 5.671 -22.453 10.928 1 5.84 ? O ARG 301 A 1 HETATM 5 C CB ARG . . . B 2 2.711 -22.514 11.135 1 5.88 ? CB ARG 301 A 1 HETATM 6 C CG ARG . . . B 2 2.319 -21.459 12.186 1 5.56 ? CG ARG 301 A 1 HETATM 7 C CD ARG . . . B 2 1.589 -20.28 11.569 1 6.57 ? CD ARG 301 A 1 HETATM 8 N NE ARG . . . B 2 0.919 -19.462 12.565 1 6.43 ? NE ARG 301 A 1 HETATM 9 C CZ ARG . . . B 2 0.181 -18.394 12.315 1 7.58 ? CZ ARG 301 A 1 HETATM 10 N NH1 ARG . . . B 2 -0.412 -17.752 13.3 1 8.01 ? NH1 ARG 301 A 1 HETATM 11 N NH2 ARG . . . B 2 -0.02 -18.058 11.064 1 8.11 ? NH2 ARG 301 A 1 HETATM 12 O OXT ARG . . . B 2 5.375 -22.7 13.093 1 5.62 ? OXT ARG 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 12 #