data_4ZVA # _model_server_result.job_id RFU5Rw924JfGL1wRdyKQ6g _model_server_result.datetime_utc '2024-11-05 00:27:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4ZVA # _exptl.entry_id 4ZVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZVA _cell.length_a 97.41 _cell.length_b 97.41 _cell.length_c 152.18 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 98 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 B NE2 HIS 93 B HIS 98 1_555 D FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 4ZVA _atom_sites.fract_transf_matrix[1][1] 0.010266 _atom_sites.fract_transf_matrix[1][2] 0.005927 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 1 HEM HEM . D 2 HEM B 1 201 1 HEM HEM . E 3 HOH A 1 301 81 HOH HOH . E 3 HOH A 2 302 28 HOH HOH . E 3 HOH A 3 303 39 HOH HOH . E 3 HOH A 4 304 1 HOH HOH . E 3 HOH A 5 305 100 HOH HOH . E 3 HOH A 6 306 56 HOH HOH . E 3 HOH A 7 307 5 HOH HOH . E 3 HOH A 8 308 47 HOH HOH . E 3 HOH A 9 309 61 HOH HOH . E 3 HOH A 10 310 3 HOH HOH . E 3 HOH A 11 311 59 HOH HOH . E 3 HOH A 12 312 131 HOH HOH . E 3 HOH A 13 313 42 HOH HOH . E 3 HOH A 14 314 45 HOH HOH . E 3 HOH A 15 315 58 HOH HOH . E 3 HOH A 16 316 66 HOH HOH . E 3 HOH A 17 317 20 HOH HOH . E 3 HOH A 18 318 114 HOH HOH . E 3 HOH A 19 319 24 HOH HOH . E 3 HOH A 20 320 18 HOH HOH . E 3 HOH A 21 321 63 HOH HOH . E 3 HOH A 22 322 9 HOH HOH . E 3 HOH A 23 323 70 HOH HOH . E 3 HOH A 24 324 52 HOH HOH . E 3 HOH A 25 325 21 HOH HOH . E 3 HOH A 26 326 53 HOH HOH . E 3 HOH A 27 327 103 HOH HOH . E 3 HOH A 28 328 4 HOH HOH . E 3 HOH A 29 329 119 HOH HOH . E 3 HOH A 30 330 19 HOH HOH . E 3 HOH A 31 331 34 HOH HOH . E 3 HOH A 32 332 133 HOH HOH . E 3 HOH A 33 333 37 HOH HOH . E 3 HOH A 34 334 142 HOH HOH . E 3 HOH A 35 335 69 HOH HOH . E 3 HOH A 36 336 92 HOH HOH . E 3 HOH A 37 337 82 HOH HOH . E 3 HOH A 38 338 67 HOH HOH . E 3 HOH A 39 339 41 HOH HOH . E 3 HOH A 40 340 29 HOH HOH . E 3 HOH A 41 341 50 HOH HOH . E 3 HOH A 42 342 166 HOH HOH . E 3 HOH A 43 343 139 HOH HOH . E 3 HOH A 44 344 12 HOH HOH . E 3 HOH A 45 345 127 HOH HOH . E 3 HOH A 46 346 54 HOH HOH . E 3 HOH A 47 347 112 HOH HOH . E 3 HOH A 48 348 11 HOH HOH . E 3 HOH A 49 349 163 HOH HOH . E 3 HOH A 50 350 86 HOH HOH . E 3 HOH A 51 351 96 HOH HOH . E 3 HOH A 52 352 115 HOH HOH . E 3 HOH A 53 353 162 HOH HOH . E 3 HOH A 54 354 148 HOH HOH . E 3 HOH A 55 355 60 HOH HOH . E 3 HOH A 56 356 74 HOH HOH . E 3 HOH A 57 357 23 HOH HOH . E 3 HOH A 58 358 164 HOH HOH . E 3 HOH A 59 359 144 HOH HOH . E 3 HOH A 60 360 167 HOH HOH . E 3 HOH A 61 361 44 HOH HOH . E 3 HOH A 62 362 88 HOH HOH . E 3 HOH A 63 363 138 HOH HOH . E 3 HOH A 64 364 124 HOH HOH . E 3 HOH A 65 365 68 HOH HOH . E 3 HOH A 66 366 72 HOH HOH . F 3 HOH B 1 301 104 HOH HOH . F 3 HOH B 2 302 2 HOH HOH . F 3 HOH B 3 303 16 HOH HOH . F 3 HOH B 4 304 8 HOH HOH . F 3 HOH B 5 305 64 HOH HOH . F 3 HOH B 6 306 51 HOH HOH . F 3 HOH B 7 307 130 HOH HOH . F 3 HOH B 8 308 43 HOH HOH . F 3 HOH B 9 309 73 HOH HOH . F 3 HOH B 10 310 25 HOH HOH . F 3 HOH B 11 311 135 HOH HOH . F 3 HOH B 12 312 22 HOH HOH . F 3 HOH B 13 313 55 HOH HOH . F 3 HOH B 14 314 33 HOH HOH . F 3 HOH B 15 315 48 HOH HOH . F 3 HOH B 16 316 40 HOH HOH . F 3 HOH B 17 317 62 HOH HOH . F 3 HOH B 18 318 13 HOH HOH . F 3 HOH B 19 319 110 HOH HOH . F 3 HOH B 20 320 123 HOH HOH . F 3 HOH B 21 321 160 HOH HOH . F 3 HOH B 22 322 77 HOH HOH . F 3 HOH B 23 323 10 HOH HOH . F 3 HOH B 24 324 6 HOH HOH . F 3 HOH B 25 325 87 HOH HOH . F 3 HOH B 26 326 155 HOH HOH . F 3 HOH B 27 327 36 HOH HOH . F 3 HOH B 28 328 7 HOH HOH . F 3 HOH B 29 329 94 HOH HOH . F 3 HOH B 30 330 14 HOH HOH . F 3 HOH B 31 331 101 HOH HOH . F 3 HOH B 32 332 15 HOH HOH . F 3 HOH B 33 333 91 HOH HOH . F 3 HOH B 34 334 32 HOH HOH . F 3 HOH B 35 335 126 HOH HOH . F 3 HOH B 36 336 35 HOH HOH . F 3 HOH B 37 337 146 HOH HOH . F 3 HOH B 38 338 71 HOH HOH . F 3 HOH B 39 339 93 HOH HOH . F 3 HOH B 40 340 46 HOH HOH . F 3 HOH B 41 341 85 HOH HOH . F 3 HOH B 42 342 27 HOH HOH . F 3 HOH B 43 343 129 HOH HOH . F 3 HOH B 44 344 108 HOH HOH . F 3 HOH B 45 345 26 HOH HOH . F 3 HOH B 46 346 105 HOH HOH . F 3 HOH B 47 347 79 HOH HOH . F 3 HOH B 48 348 38 HOH HOH . F 3 HOH B 49 349 116 HOH HOH . F 3 HOH B 50 350 57 HOH HOH . F 3 HOH B 51 351 17 HOH HOH . F 3 HOH B 52 352 122 HOH HOH . F 3 HOH B 53 353 157 HOH HOH . F 3 HOH B 54 354 30 HOH HOH . F 3 HOH B 55 355 99 HOH HOH . F 3 HOH B 56 356 78 HOH HOH . F 3 HOH B 57 357 145 HOH HOH . F 3 HOH B 58 358 95 HOH HOH . F 3 HOH B 59 359 90 HOH HOH . F 3 HOH B 60 360 31 HOH HOH . F 3 HOH B 61 361 102 HOH HOH . F 3 HOH B 62 362 128 HOH HOH . F 3 HOH B 63 363 149 HOH HOH . F 3 HOH B 64 364 83 HOH HOH . F 3 HOH B 65 365 49 HOH HOH . F 3 HOH B 66 366 65 HOH HOH . F 3 HOH B 67 367 136 HOH HOH . F 3 HOH B 68 368 165 HOH HOH . F 3 HOH B 69 369 125 HOH HOH . F 3 HOH B 70 370 89 HOH HOH . F 3 HOH B 71 371 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 2 -14.503 43.545 5.682 1 35.11 ? CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . D 2 -9.84 44.695 5.082 1 45.97 ? CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . D 2 -9.817 41.938 1.093 1 42.08 ? CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . D 2 -14.049 39.958 2.365 1 43.32 ? CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . D 2 -13.251 44.067 5.911 1 41.96 ? C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . D 2 -12.825 44.819 7.077 1 40.16 ? C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . D 2 -11.533 45.14 6.906 1 42.44 ? C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . D 2 -11.099 44.596 5.633 1 41.49 ? C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . D 2 -10.633 45.943 7.87 1 37.97 ? CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . D 2 -13.733 45.18 8.277 1 44 ? CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . D 2 -13.334 44.379 9.514 1 40.5 ? CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . D 2 -14.264 44.691 10.66 1 49.46 ? CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . D 2 -15.505 44.713 10.451 1 46.47 ? O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . D 2 -13.763 44.904 11.793 1 43.34 ? O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . D 2 -9.413 44.028 3.953 1 41.78 ? C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . D 2 -8.064 44.025 3.421 1 43.21 ? C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . D 2 -8.059 43.257 2.314 1 42.05 ? C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . D 2 -9.406 42.76 2.12 1 45.16 ? C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . D 2 -6.891 44.794 4.076 1 43.57 ? CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . D 2 -6.903 42.899 1.343 1 46.54 ? CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . D 2 -5.651 43.356 1.444 1 53.98 ? CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . D 2 -10.898 41.086 1.131 1 45.36 ? C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . D 2 -11.102 39.912 0.303 1 45.35 ? C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . D 2 -12.282 39.361 0.654 1 45.91 ? C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . D 2 -12.85 40.175 1.716 1 42.71 ? C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . D 2 -10.09 39.449 -0.771 1 40.25 ? CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . D 2 -12.993 38.096 0.104 1 36.87 ? CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . D 2 -12.488 37.281 -0.829 1 46.25 ? CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . D 2 -14.577 40.722 3.39 1 45.87 ? C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . D 2 -15.828 40.466 4.078 1 39.29 ? C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . D 2 -15.961 41.59 5.115 1 44.25 ? C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . D 2 -14.786 42.413 4.947 1 43.49 ? C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . D 2 -16.818 39.308 3.832 1 35.95 ? CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . D 2 -17.107 41.823 6.122 1 33.61 ? CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . D 2 -18.309 42.378 5.366 1 40.57 ? CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . D 2 -19.225 43.096 6.321 1 44.9 ? CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . D 2 -20.371 43.417 5.92 1 48.91 ? O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . D 2 -18.811 43.344 7.483 1 41.28 ? O2D HEM 201 B 1 HETATM 39 N NA HEM . . . D 2 -12.175 43.95 5.057 1 34.91 ? NA HEM 201 B 1 HETATM 40 N NB HEM . . . D 2 -10.206 43.248 3.134 1 42.95 ? NB HEM 201 B 1 HETATM 41 N NC HEM . . . D 2 -11.98 41.213 1.974 1 43.68 ? NC HEM 201 B 1 HETATM 42 N ND HEM . . . D 2 -14.001 41.873 3.929 1 39.73 ? ND HEM 201 B 1 HETATM 43 FE FE HEM . . . D 2 -12.188 42.728 3.365 1 40.13 ? FE HEM 201 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #