data_4ZVF # _model_server_result.job_id 6XDzQtkENaM8vKmbltQYHg _model_server_result.datetime_utc '2024-11-14 11:08:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4ZVF # _exptl.entry_id 4ZVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.08 _cell.angle_gamma 90 _cell.entry_id 4ZVF _cell.length_a 28.5 _cell.length_b 52.53 _cell.length_c 50.93 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 37 A ASP 333 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A OD2 ASP 37 A ASP 333 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A O VAL 38 A VAL 334 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 A OD2 ASP 80 A ASP 376 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 A OE2 GLU 81 A GLU 377 1_555 D CA CA . A CA 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 A OE2 GLU 81 A GLU 377 1_555 D CA CA . A CA 503 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 B O1B GAV . A GAV 501 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc8 B O2G GAV . A GAV 501 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc9 C CA CA . A CA 502 1_555 G O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc10 D CA CA . A CA 503 1_555 G O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc11 D CA CA . A CA 503 1_555 G O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc12 D CA CA . A CA 503 1_555 G O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc13 D CA CA . A CA 503 1_555 G O HOH . A HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc14 D CA CA . A CA 503 1_555 G O HOH . A HOH 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZVF _atom_sites.fract_transf_matrix[1][1] 0.035088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010117 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAV A 1 501 600 GAV GAV . C 3 CA A 1 502 1 CA CA . D 3 CA A 1 503 1 CA CA . E 4 EDO A 1 504 1 EDO EDO . F 4 EDO A 1 505 2 EDO EDO . G 5 HOH A 1 601 62 HOH HOH . G 5 HOH A 2 602 141 HOH HOH . G 5 HOH A 3 603 65 HOH HOH . G 5 HOH A 4 604 56 HOH HOH . G 5 HOH A 5 605 81 HOH HOH . G 5 HOH A 6 606 92 HOH HOH . G 5 HOH A 7 607 3 HOH HOH . G 5 HOH A 8 608 45 HOH HOH . G 5 HOH A 9 609 102 HOH HOH . G 5 HOH A 10 610 176 HOH HOH . G 5 HOH A 11 611 80 HOH HOH . G 5 HOH A 12 612 86 HOH HOH . G 5 HOH A 13 613 37 HOH HOH . G 5 HOH A 14 614 28 HOH HOH . G 5 HOH A 15 615 164 HOH HOH . G 5 HOH A 16 616 90 HOH HOH . G 5 HOH A 17 617 180 HOH HOH . G 5 HOH A 18 618 57 HOH HOH . G 5 HOH A 19 619 163 HOH HOH . G 5 HOH A 20 620 151 HOH HOH . G 5 HOH A 21 621 38 HOH HOH . G 5 HOH A 22 622 84 HOH HOH . G 5 HOH A 23 623 29 HOH HOH . G 5 HOH A 24 624 61 HOH HOH . G 5 HOH A 25 625 127 HOH HOH . G 5 HOH A 26 626 148 HOH HOH . G 5 HOH A 27 627 6 HOH HOH . G 5 HOH A 28 628 58 HOH HOH . G 5 HOH A 29 629 32 HOH HOH . G 5 HOH A 30 630 131 HOH HOH . G 5 HOH A 31 631 39 HOH HOH . G 5 HOH A 32 632 40 HOH HOH . G 5 HOH A 33 633 34 HOH HOH . G 5 HOH A 34 634 168 HOH HOH . G 5 HOH A 35 635 4 HOH HOH . G 5 HOH A 36 636 25 HOH HOH . G 5 HOH A 37 637 15 HOH HOH . G 5 HOH A 38 638 113 HOH HOH . G 5 HOH A 39 639 21 HOH HOH . G 5 HOH A 40 640 94 HOH HOH . G 5 HOH A 41 641 2 HOH HOH . G 5 HOH A 42 642 157 HOH HOH . G 5 HOH A 43 643 149 HOH HOH . G 5 HOH A 44 644 49 HOH HOH . G 5 HOH A 45 645 160 HOH HOH . G 5 HOH A 46 646 115 HOH HOH . G 5 HOH A 47 647 116 HOH HOH . G 5 HOH A 48 648 75 HOH HOH . G 5 HOH A 49 649 23 HOH HOH . G 5 HOH A 50 650 44 HOH HOH . G 5 HOH A 51 651 96 HOH HOH . G 5 HOH A 52 652 7 HOH HOH . G 5 HOH A 53 653 112 HOH HOH . G 5 HOH A 54 654 46 HOH HOH . G 5 HOH A 55 655 31 HOH HOH . G 5 HOH A 56 656 11 HOH HOH . G 5 HOH A 57 657 59 HOH HOH . G 5 HOH A 58 658 99 HOH HOH . G 5 HOH A 59 659 27 HOH HOH . G 5 HOH A 60 660 52 HOH HOH . G 5 HOH A 61 661 19 HOH HOH . G 5 HOH A 62 662 14 HOH HOH . G 5 HOH A 63 663 43 HOH HOH . G 5 HOH A 64 664 50 HOH HOH . G 5 HOH A 65 665 122 HOH HOH . G 5 HOH A 66 666 126 HOH HOH . G 5 HOH A 67 667 98 HOH HOH . G 5 HOH A 68 668 41 HOH HOH . G 5 HOH A 69 669 95 HOH HOH . G 5 HOH A 70 670 17 HOH HOH . G 5 HOH A 71 671 8 HOH HOH . G 5 HOH A 72 672 26 HOH HOH . G 5 HOH A 73 673 42 HOH HOH . G 5 HOH A 74 674 182 HOH HOH . G 5 HOH A 75 675 60 HOH HOH . G 5 HOH A 76 676 73 HOH HOH . G 5 HOH A 77 677 87 HOH HOH . G 5 HOH A 78 678 64 HOH HOH . G 5 HOH A 79 679 85 HOH HOH . G 5 HOH A 80 680 13 HOH HOH . G 5 HOH A 81 681 111 HOH HOH . G 5 HOH A 82 682 70 HOH HOH . G 5 HOH A 83 683 117 HOH HOH . G 5 HOH A 84 684 1 HOH HOH . G 5 HOH A 85 685 89 HOH HOH . G 5 HOH A 86 686 5 HOH HOH . G 5 HOH A 87 687 18 HOH HOH . G 5 HOH A 88 688 22 HOH HOH . G 5 HOH A 89 689 76 HOH HOH . G 5 HOH A 90 690 100 HOH HOH . G 5 HOH A 91 691 36 HOH HOH . G 5 HOH A 92 692 192 HOH HOH . G 5 HOH A 93 693 132 HOH HOH . G 5 HOH A 94 694 67 HOH HOH . G 5 HOH A 95 695 53 HOH HOH . G 5 HOH A 96 696 145 HOH HOH . G 5 HOH A 97 697 16 HOH HOH . G 5 HOH A 98 698 83 HOH HOH . G 5 HOH A 99 699 51 HOH HOH . G 5 HOH A 100 700 66 HOH HOH . G 5 HOH A 101 701 30 HOH HOH . G 5 HOH A 102 702 35 HOH HOH . G 5 HOH A 103 703 177 HOH HOH . G 5 HOH A 104 704 109 HOH HOH . G 5 HOH A 105 705 130 HOH HOH . G 5 HOH A 106 706 135 HOH HOH . G 5 HOH A 107 707 105 HOH HOH . G 5 HOH A 108 708 54 HOH HOH . G 5 HOH A 109 709 144 HOH HOH . G 5 HOH A 110 710 97 HOH HOH . G 5 HOH A 111 711 91 HOH HOH . G 5 HOH A 112 712 156 HOH HOH . G 5 HOH A 113 713 169 HOH HOH . G 5 HOH A 114 714 165 HOH HOH . G 5 HOH A 115 715 20 HOH HOH . G 5 HOH A 116 716 121 HOH HOH . G 5 HOH A 117 717 166 HOH HOH . G 5 HOH A 118 718 124 HOH HOH . G 5 HOH A 119 719 10 HOH HOH . G 5 HOH A 120 720 104 HOH HOH . G 5 HOH A 121 721 24 HOH HOH . G 5 HOH A 122 722 79 HOH HOH . G 5 HOH A 123 723 195 HOH HOH . G 5 HOH A 124 724 137 HOH HOH . G 5 HOH A 125 725 48 HOH HOH . G 5 HOH A 126 726 171 HOH HOH . G 5 HOH A 127 727 194 HOH HOH . G 5 HOH A 128 728 82 HOH HOH . G 5 HOH A 129 729 63 HOH HOH . G 5 HOH A 130 730 123 HOH HOH . G 5 HOH A 131 731 119 HOH HOH . G 5 HOH A 132 732 190 HOH HOH . G 5 HOH A 133 733 118 HOH HOH . G 5 HOH A 134 734 159 HOH HOH . G 5 HOH A 135 735 77 HOH HOH . G 5 HOH A 136 736 167 HOH HOH . G 5 HOH A 137 737 133 HOH HOH . G 5 HOH A 138 738 55 HOH HOH . G 5 HOH A 139 739 155 HOH HOH . G 5 HOH A 140 740 158 HOH HOH . G 5 HOH A 141 741 140 HOH HOH . G 5 HOH A 142 742 47 HOH HOH . G 5 HOH A 143 743 71 HOH HOH . G 5 HOH A 144 744 162 HOH HOH . G 5 HOH A 145 745 129 HOH HOH . G 5 HOH A 146 746 170 HOH HOH . G 5 HOH A 147 747 68 HOH HOH . G 5 HOH A 148 748 150 HOH HOH . G 5 HOH A 149 749 78 HOH HOH . G 5 HOH A 150 750 72 HOH HOH . G 5 HOH A 151 751 186 HOH HOH . G 5 HOH A 152 752 139 HOH HOH . G 5 HOH A 153 753 189 HOH HOH . G 5 HOH A 154 754 69 HOH HOH . G 5 HOH A 155 755 136 HOH HOH . G 5 HOH A 156 756 178 HOH HOH . G 5 HOH A 157 757 88 HOH HOH . G 5 HOH A 158 758 107 HOH HOH . G 5 HOH A 159 759 103 HOH HOH . G 5 HOH A 160 760 114 HOH HOH . G 5 HOH A 161 761 172 HOH HOH . G 5 HOH A 162 762 146 HOH HOH . G 5 HOH A 163 763 185 HOH HOH . G 5 HOH A 164 764 108 HOH HOH . G 5 HOH A 165 765 33 HOH HOH . G 5 HOH A 166 766 101 HOH HOH . G 5 HOH A 167 767 193 HOH HOH . G 5 HOH A 168 768 184 HOH HOH . G 5 HOH A 169 769 181 HOH HOH . G 5 HOH A 170 770 173 HOH HOH . G 5 HOH A 171 771 128 HOH HOH . G 5 HOH A 172 772 183 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.862 _atom_site.Cartn_y -15.187 _atom_site.Cartn_z 13.261 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #