data_4ZWM
#
_model_server_result.job_id            bcDRtRsY-rT0tuuux_gOWw 
_model_server_result.datetime_utc      '2024-11-23 05:44:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zwm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    4ZWM 
#
_exptl.entry_id    4ZWM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         100.7 
_cell.angle_beta          92.63 
_cell.angle_gamma         107.68 
_cell.entry_id            4ZWM 
_cell.length_a            56.418 
_cell.length_b            60.804 
_cell.length_c            63.379 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             96 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              96 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             96 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              96 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.143 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     4ZWM 
_atom_sites.fract_transf_matrix[1][1]    0.017725 
_atom_sites.fract_transf_matrix[1][2]    0.005649 
_atom_sites.fract_transf_matrix[1][3]    0.002045 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017261 
_atom_sites.fract_transf_matrix[2][3]    0.003703 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016154 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 501 1 PLP PLP . 
D 3 SO4 A 1 502 1 SO4 SO4 . 
E 3 SO4 A 1 503 2 SO4 SO4 . 
F 3 SO4 A 1 504 3 SO4 SO4 . 
G 3 SO4 A 1 505 9 SO4 SO4 . 
H 3 SO4 A 1 506 11 SO4 SO4 . 
I 3 SO4 A 1 507 12 SO4 SO4 . 
J 2 PLP B 1 501 2 PLP PLP . 
K 3 SO4 B 1 502 4 SO4 SO4 . 
L 3 SO4 B 1 503 5 SO4 SO4 . 
M 3 SO4 B 1 504 6 SO4 SO4 . 
N 3 SO4 B 1 505 7 SO4 SO4 . 
O 3 SO4 B 1 506 10 SO4 SO4 . 
P 3 SO4 B 1 507 13 SO4 SO4 . 
Q 4 HOH A 1 601 10 HOH HOH . 
Q 4 HOH A 2 602 45 HOH HOH . 
Q 4 HOH A 3 603 55 HOH HOH . 
Q 4 HOH A 4 604 2 HOH HOH . 
Q 4 HOH A 5 605 60 HOH HOH . 
Q 4 HOH A 6 606 131 HOH HOH . 
Q 4 HOH A 7 607 46 HOH HOH . 
Q 4 HOH A 8 608 19 HOH HOH . 
Q 4 HOH A 9 609 100 HOH HOH . 
Q 4 HOH A 10 610 4 HOH HOH . 
Q 4 HOH A 11 611 55 HOH HOH . 
Q 4 HOH A 12 612 31 HOH HOH . 
Q 4 HOH A 13 613 74 HOH HOH . 
Q 4 HOH A 14 614 24 HOH HOH . 
Q 4 HOH A 15 615 20 HOH HOH . 
Q 4 HOH A 16 616 58 HOH HOH . 
Q 4 HOH A 17 617 115 HOH HOH . 
Q 4 HOH A 18 618 17 HOH HOH . 
Q 4 HOH A 19 619 12 HOH HOH . 
Q 4 HOH A 20 620 74 HOH HOH . 
Q 4 HOH A 21 621 192 HOH HOH . 
Q 4 HOH A 22 622 41 HOH HOH . 
Q 4 HOH A 23 623 54 HOH HOH . 
Q 4 HOH A 24 624 35 HOH HOH . 
Q 4 HOH A 25 625 105 HOH HOH . 
Q 4 HOH A 26 626 143 HOH HOH . 
Q 4 HOH A 27 627 69 HOH HOH . 
Q 4 HOH A 28 628 17 HOH HOH . 
Q 4 HOH A 29 629 141 HOH HOH . 
Q 4 HOH A 30 630 72 HOH HOH . 
Q 4 HOH A 31 631 277 HOH HOH . 
Q 4 HOH A 32 632 38 HOH HOH . 
Q 4 HOH A 33 633 22 HOH HOH . 
Q 4 HOH A 34 634 22 HOH HOH . 
Q 4 HOH A 35 635 24 HOH HOH . 
Q 4 HOH A 36 636 52 HOH HOH . 
Q 4 HOH A 37 637 21 HOH HOH . 
Q 4 HOH A 38 638 23 HOH HOH . 
Q 4 HOH A 39 639 220 HOH HOH . 
Q 4 HOH A 40 640 196 HOH HOH . 
Q 4 HOH A 41 641 82 HOH HOH . 
Q 4 HOH A 42 642 10 HOH HOH . 
Q 4 HOH A 43 643 57 HOH HOH . 
Q 4 HOH A 44 644 16 HOH HOH . 
Q 4 HOH A 45 645 41 HOH HOH . 
Q 4 HOH A 46 646 122 HOH HOH . 
Q 4 HOH A 47 647 59 HOH HOH . 
Q 4 HOH A 48 648 80 HOH HOH . 
Q 4 HOH A 49 649 56 HOH HOH . 
Q 4 HOH A 50 650 7 HOH HOH . 
Q 4 HOH A 51 651 45 HOH HOH . 
Q 4 HOH A 52 652 20 HOH HOH . 
Q 4 HOH A 53 653 69 HOH HOH . 
Q 4 HOH A 54 654 6 HOH HOH . 
Q 4 HOH A 55 655 87 HOH HOH . 
Q 4 HOH A 56 656 273 HOH HOH . 
Q 4 HOH A 57 657 30 HOH HOH . 
Q 4 HOH A 58 658 145 HOH HOH . 
Q 4 HOH A 59 659 78 HOH HOH . 
Q 4 HOH A 60 660 174 HOH HOH . 
Q 4 HOH A 61 661 118 HOH HOH . 
Q 4 HOH A 62 662 173 HOH HOH . 
Q 4 HOH A 63 663 29 HOH HOH . 
Q 4 HOH A 64 664 21 HOH HOH . 
Q 4 HOH A 65 665 147 HOH HOH . 
Q 4 HOH A 66 666 30 HOH HOH . 
Q 4 HOH A 67 667 27 HOH HOH . 
Q 4 HOH A 68 668 36 HOH HOH . 
Q 4 HOH A 69 669 64 HOH HOH . 
Q 4 HOH A 70 670 8 HOH HOH . 
Q 4 HOH A 71 671 206 HOH HOH . 
Q 4 HOH A 72 672 73 HOH HOH . 
Q 4 HOH A 73 673 37 HOH HOH . 
Q 4 HOH A 74 674 78 HOH HOH . 
Q 4 HOH A 75 675 195 HOH HOH . 
Q 4 HOH A 76 676 193 HOH HOH . 
Q 4 HOH A 77 677 57 HOH HOH . 
Q 4 HOH A 78 678 43 HOH HOH . 
Q 4 HOH A 79 679 60 HOH HOH . 
Q 4 HOH A 80 680 112 HOH HOH . 
Q 4 HOH A 81 681 79 HOH HOH . 
Q 4 HOH A 82 682 39 HOH HOH . 
Q 4 HOH A 83 683 40 HOH HOH . 
Q 4 HOH A 84 684 316 HOH HOH . 
Q 4 HOH A 85 685 312 HOH HOH . 
Q 4 HOH A 86 686 27 HOH HOH . 
Q 4 HOH A 87 687 314 HOH HOH . 
Q 4 HOH A 88 688 32 HOH HOH . 
Q 4 HOH A 89 689 9 HOH HOH . 
R 4 HOH B 1 601 13 HOH HOH . 
R 4 HOH B 2 602 70 HOH HOH . 
R 4 HOH B 3 603 124 HOH HOH . 
R 4 HOH B 4 604 34 HOH HOH . 
R 4 HOH B 5 605 46 HOH HOH . 
R 4 HOH B 6 606 37 HOH HOH . 
R 4 HOH B 7 607 65 HOH HOH . 
R 4 HOH B 8 608 64 HOH HOH . 
R 4 HOH B 9 609 1 HOH HOH . 
R 4 HOH B 10 610 81 HOH HOH . 
R 4 HOH B 11 611 135 HOH HOH . 
R 4 HOH B 12 612 51 HOH HOH . 
R 4 HOH B 13 613 67 HOH HOH . 
R 4 HOH B 14 614 163 HOH HOH . 
R 4 HOH B 15 615 12 HOH HOH . 
R 4 HOH B 16 616 38 HOH HOH . 
R 4 HOH B 17 617 120 HOH HOH . 
R 4 HOH B 18 618 47 HOH HOH . 
R 4 HOH B 19 619 107 HOH HOH . 
R 4 HOH B 20 620 245 HOH HOH . 
R 4 HOH B 21 621 67 HOH HOH . 
R 4 HOH B 22 622 49 HOH HOH . 
R 4 HOH B 23 623 29 HOH HOH . 
R 4 HOH B 24 624 32 HOH HOH . 
R 4 HOH B 25 625 91 HOH HOH . 
R 4 HOH B 26 626 71 HOH HOH . 
R 4 HOH B 27 627 31 HOH HOH . 
R 4 HOH B 28 628 99 HOH HOH . 
R 4 HOH B 29 629 121 HOH HOH . 
R 4 HOH B 30 630 77 HOH HOH . 
R 4 HOH B 31 631 13 HOH HOH . 
R 4 HOH B 32 632 15 HOH HOH . 
R 4 HOH B 33 633 11 HOH HOH . 
R 4 HOH B 34 634 82 HOH HOH . 
R 4 HOH B 35 635 250 HOH HOH . 
R 4 HOH B 36 636 94 HOH HOH . 
R 4 HOH B 37 637 42 HOH HOH . 
R 4 HOH B 38 638 104 HOH HOH . 
R 4 HOH B 39 639 14 HOH HOH . 
R 4 HOH B 40 640 84 HOH HOH . 
R 4 HOH B 41 641 52 HOH HOH . 
R 4 HOH B 42 642 97 HOH HOH . 
R 4 HOH B 43 643 34 HOH HOH . 
R 4 HOH B 44 644 216 HOH HOH . 
R 4 HOH B 45 645 7 HOH HOH . 
R 4 HOH B 46 646 242 HOH HOH . 
R 4 HOH B 47 647 160 HOH HOH . 
R 4 HOH B 48 648 232 HOH HOH . 
R 4 HOH B 49 649 48 HOH HOH . 
R 4 HOH B 50 650 61 HOH HOH . 
R 4 HOH B 51 651 127 HOH HOH . 
R 4 HOH B 52 652 33 HOH HOH . 
R 4 HOH B 53 653 77 HOH HOH . 
R 4 HOH B 54 654 54 HOH HOH . 
R 4 HOH B 55 655 48 HOH HOH . 
R 4 HOH B 56 656 170 HOH HOH . 
R 4 HOH B 57 657 215 HOH HOH . 
R 4 HOH B 58 658 50 HOH HOH . 
R 4 HOH B 59 659 66 HOH HOH . 
R 4 HOH B 60 660 103 HOH HOH . 
R 4 HOH B 61 661 80 HOH HOH . 
R 4 HOH B 62 662 139 HOH HOH . 
R 4 HOH B 63 663 36 HOH HOH . 
R 4 HOH B 64 664 75 HOH HOH . 
R 4 HOH B 65 665 1 HOH HOH . 
R 4 HOH B 66 666 62 HOH HOH . 
R 4 HOH B 67 667 28 HOH HOH . 
R 4 HOH B 68 668 81 HOH HOH . 
R 4 HOH B 69 669 25 HOH HOH . 
R 4 HOH B 70 670 14 HOH HOH . 
R 4 HOH B 71 671 6 HOH HOH . 
R 4 HOH B 72 672 313 HOH HOH . 
R 4 HOH B 73 673 76 HOH HOH . 
R 4 HOH B 74 674 317 HOH HOH . 
R 4 HOH B 75 675 5 HOH HOH . 
R 4 HOH B 76 676 315 HOH HOH . 
R 4 HOH B 77 677 311 HOH HOH . 
R 4 HOH B 78 678 42 HOH HOH . 
R 4 HOH B 79 679 63 HOH HOH . 
R 4 HOH B 80 680 58 HOH HOH . 
R 4 HOH B 81 681 33 HOH HOH . 
R 4 HOH B 82 682 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . J 2 39.941 8.316 75.515 1 30.87 ? N1 PLP 501 B 1 
HETATM 2 C C2 PLP . . . J 2 40.027 9.255 76.507 1 30.72 ? C2 PLP 501 B 1 
HETATM 3 C C2A PLP . . . J 2 41.282 9.372 77.35 1 31.15 ? C2A PLP 501 B 1 
HETATM 4 C C3 PLP . . . J 2 38.883 10.169 76.739 1 28.62 ? C3 PLP 501 B 1 
HETATM 5 O O3 PLP . . . J 2 38.91 11.121 77.71 1 28.59 ? O3 PLP 501 B 1 
HETATM 6 C C4 PLP . . . J 2 37.695 9.997 75.878 1 30.26 ? C4 PLP 501 B 1 
HETATM 7 C C4A PLP . . . J 2 36.526 10.886 76.09 1 30.87 ? C4A PLP 501 B 1 
HETATM 8 C C5 PLP . . . J 2 37.73 8.93 74.836 1 30.85 ? C5 PLP 501 B 1 
HETATM 9 C C6 PLP . . . J 2 38.876 8.143 74.709 1 30.18 ? C6 PLP 501 B 1 
HETATM 10 C C5A PLP . . . J 2 36.552 8.691 73.92 1 32.38 ? C5A PLP 501 B 1 
HETATM 11 O O4P PLP . . . J 2 36.395 9.812 73.055 1 34.4 ? O4P PLP 501 B 1 
HETATM 12 P P PLP . . . J 2 35.013 10.061 72.269 1 34.16 ? P PLP 501 B 1 
HETATM 13 O O1P PLP . . . J 2 35.502 11.065 71.233 1 34.84 ? O1P PLP 501 B 1 
HETATM 14 O O2P PLP . . . J 2 34.574 8.692 71.785 1 31.68 ? O2P PLP 501 B 1 
HETATM 15 O O3P PLP . . . J 2 34.099 10.632 73.316 1 34.96 ? O3P PLP 501 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#