data_4ZXB # _model_server_result.job_id TZVhR9sQ4-coPSoPVMC1fw _model_server_result.datetime_utc '2024-11-05 00:28:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1020}' # _entry.id 4ZXB # _exptl.entry_id 4ZXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 10 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZXB _cell.length_a 121.87 _cell.length_b 321.25 _cell.length_c 199.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 99.7 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 M N N ? 10 N N N ? 10 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide 9 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 8 4 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 8 5 4 NAG MAN C1 O1 . O2 HO2 . sing 9 ? 8 6 1 FUC NAG C1 O1 . O6 HO6 . sing 10 ? 9 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 F 1 NAG X 201 NAG 6 n F NAG 2 F 2 NAG X 202 NAG 6 n F FUC 3 F 3 FUC X 208 FUC 7 n G NAG 1 G 1 NAG X 301 NAG 7 n G NAG 2 G 2 NAG X 302 NAG 7 n G BMA 3 G 3 BMA X 303 BMA 6 n H NAG 1 H 1 NAG X 501 NAG 6 n H NAG 2 H 2 NAG X 502 NAG 6 n H FUC 3 H 3 FUC X 508 FUC 8 n I NAG 1 I 1 NAG X 801 NAG 8 n I NAG 2 I 2 NAG X 802 NAG 8 n I BMA 3 I 3 BMA X 803 BMA 8 n I MAN 4 I 4 MAN X 804 MAN 8 n I NAG 5 I 5 NAG X 805 NAG 8 n I FUC 6 I 6 FUC X 808 FUC 9 n J NAG 1 J 1 NAG X 901 NAG 9 n J FUC 2 J 2 FUC X 908 FUC 6 n K NAG 1 K 1 NAG X 1101 NAG 6 n K NAG 2 K 2 NAG X 1102 NAG 6 n K FUC 3 K 3 FUC X 1108 FUC 9 n L NAG 1 L 1 NAG X 1401 NAG 9 n L FUC 2 L 2 FUC X 1408 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 B SG CYS 139 B CYS 139 1_555 B SG CYS 199 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 C SG CYS 140 C CYS 140 1_555 C SG CYS 195 C CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 D SG CYS 23 D CYS 23 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 E SG CYS 8 E CYS 8 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 E SG CYS 126 E CYS 126 1_555 E SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf10 E SG CYS 159 E CYS 159 1_555 E SG CYS 182 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 E SG CYS 169 E CYS 169 1_555 E SG CYS 188 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf12 E SG CYS 192 E CYS 192 1_555 E SG CYS 201 E CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf13 E SG CYS 196 E CYS 196 1_555 E SG CYS 207 E CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf14 E SG CYS 208 E CYS 208 1_555 E SG CYS 216 E CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 E SG CYS 212 E CYS 212 1_555 E SG CYS 225 E CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 E SG CYS 228 E CYS 228 1_555 E SG CYS 237 E CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf17 E SG CYS 241 E CYS 241 1_555 E SG CYS 253 E CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 E SG CYS 259 E CYS 259 1_555 E SG CYS 284 E CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf19 E SG CYS 266 E CYS 266 1_555 E SG CYS 274 E CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf20 E SG CYS 288 E CYS 288 1_555 E SG CYS 301 E CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf21 E SG CYS 304 E CYS 304 1_555 E SG CYS 308 E CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf22 E SG CYS 312 E CYS 312 1_555 E SG CYS 333 E CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 E SG CYS 435 E CYS 435 1_555 E SG CYS 468 E CYS 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf24 E SG CYS 647 E CYS 647 1_555 E SG CYS 837 E CYS 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf25 E SG CYS 763 E CYS 786 1_555 E SG CYS 772 E CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 E ND2 ASN 16 E ASN 16 1_555 M C1 NAG . E NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 E ND2 ASN 25 E ASN 25 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 E ND2 ASN 111 E ASN 111 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 E ND2 ASN 215 E ASN 215 1_555 N C1 NAG . E NAG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 E ND2 ASN 255 E ASN 255 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 E ND2 ASN 397 E ASN 397 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale7 E ND2 ASN 418 E ASN 418 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 E ND2 ASN 514 E ASN 514 1_555 O C1 NAG . E NAG 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 E ND2 ASN 606 E ASN 606 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale10 E ND2 ASN 858 E ASN 881 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale12 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale15 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale16 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale17 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale18 I O6 NAG . I NAG 1 1_555 I C1 FUC . I FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale19 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale20 I O6 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale21 I O2 MAN . I MAN 4 1_555 I C1 NAG . I NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale22 J O6 NAG . J NAG 1 1_555 J C1 FUC . J FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale23 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale24 K O6 NAG . K NAG 1 1_555 K C1 FUC . K FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale25 L O6 NAG . L NAG 1 1_555 L C1 FUC . L FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4ZXB _atom_sites.fract_transf_matrix[1][1] 0.008205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 10 NAG E 1 1001 101 NAG NAG . N 10 NAG E 1 1008 401 NAG NAG . O 10 NAG E 1 1020 1001 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 10 -11.476 90.04 28.315 1 155.04 ? C1 NAG 1020 E 1 HETATM 2 C C2 NAG . . . O 10 -10.105 90.34 28.926 1 162.99 ? C2 NAG 1020 E 1 HETATM 3 C C3 NAG . . . O 10 -10.051 91.84 29.222 1 164.59 ? C3 NAG 1020 E 1 HETATM 4 C C4 NAG . . . O 10 -10.227 92.632 27.929 1 169.24 ? C4 NAG 1020 E 1 HETATM 5 C C5 NAG . . . O 10 -11.526 92.231 27.226 1 167.42 ? C5 NAG 1020 E 1 HETATM 6 C C6 NAG . . . O 10 -11.634 92.809 25.827 1 168.26 ? C6 NAG 1020 E 1 HETATM 7 C C7 NAG . . . O 10 -9.097 88.41 30.103 1 161.34 ? C7 NAG 1020 E 1 HETATM 8 C C8 NAG . . . O 10 -8.873 87.762 31.436 1 156.33 ? C8 NAG 1020 E 1 HETATM 9 N N2 NAG . . . O 10 -9.796 89.564 30.118 1 165.87 ? N2 NAG 1020 E 1 HETATM 10 O O3 NAG . . . O 10 -8.8 92.172 29.819 1 159.92 ? O3 NAG 1020 E 1 HETATM 11 O O4 NAG . . . O 10 -10.212 94.035 28.201 1 168.25 ? O4 NAG 1020 E 1 HETATM 12 O O5 NAG . . . O 10 -11.616 90.793 27.098 1 160.4 ? O5 NAG 1020 E 1 HETATM 13 O O6 NAG . . . O 10 -12.838 92.435 25.173 1 168.95 ? O6 NAG 1020 E 1 HETATM 14 O O7 NAG . . . O 10 -8.673 87.915 29.061 1 159.81 ? O7 NAG 1020 E 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #