data_4ZXH # _model_server_result.job_id '_CLBEUOYy3OPuiYcZj3dfw' _model_server_result.datetime_utc '2024-11-16 21:38:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1402}' # _entry.id 4ZXH # _exptl.entry_id 4ZXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZXH _cell.length_a 116.187 _cell.length_b 116.187 _cell.length_c 348.607 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 2 A HIS 0 1_555 E NI NI . A NI 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A O GLU 371 A GLU 369 1_555 D K K . A K 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc3 A O LEU 372 A LEU 370 1_555 D K K . A K 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc4 A O LEU 374 A LEU 372 1_555 D K K . A K 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc5 A O ILE 376 A ILE 374 1_555 D K K . A K 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc6 A OG SER 391 A SER 389 1_555 D K K . A K 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? covale ? covale1 A OG SER 1008 A SER 1006 1_555 B P24 PNS . A PNS 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? metalc ? metalc7 A NE2 HIS 526 A HIS 524 1_555 E NI NI . A NI 1404 5_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZXH _atom_sites.fract_transf_matrix[1][1] 0.008607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PNS A 1 1401 1319 PNS PNS . C 3 PX4 A 1 1402 1 PX4 PX4 . D 4 K A 1 1403 1 K K . E 5 NI A 1 1404 1 NI NI . F 6 HOH A 1 1501 11 HOH HOH . F 6 HOH A 2 1502 12 HOH HOH . F 6 HOH A 3 1503 17 HOH HOH . F 6 HOH A 4 1504 3 HOH HOH . F 6 HOH A 5 1505 7 HOH HOH . F 6 HOH A 6 1506 24 HOH HOH . F 6 HOH A 7 1507 22 HOH HOH . F 6 HOH A 8 1508 16 HOH HOH . F 6 HOH A 9 1509 4 HOH HOH . F 6 HOH A 10 1510 21 HOH HOH . F 6 HOH A 11 1511 25 HOH HOH . F 6 HOH A 12 1512 9 HOH HOH . F 6 HOH A 13 1513 8 HOH HOH . F 6 HOH A 14 1514 23 HOH HOH . F 6 HOH A 15 1515 6 HOH HOH . F 6 HOH A 16 1516 13 HOH HOH . F 6 HOH A 17 1517 2 HOH HOH . F 6 HOH A 18 1518 20 HOH HOH . F 6 HOH A 19 1519 14 HOH HOH . F 6 HOH A 20 1520 26 HOH HOH . F 6 HOH A 21 1521 5 HOH HOH . F 6 HOH A 22 1522 15 HOH HOH . F 6 HOH A 23 1523 19 HOH HOH . F 6 HOH A 24 1524 10 HOH HOH . F 6 HOH A 25 1525 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . C 3 -15.591 72.639 152.06 1 148.3 ? O1 PX4 1402 A 1 HETATM 2 O O2 PX4 . . . C 3 -16.467 71.515 149.877 1 149.11 ? O2 PX4 1402 A 1 HETATM 3 P P1 PX4 . . . C 3 -16.547 71.687 151.375 1 150.51 ? P1 PX4 1402 A 1 HETATM 4 O O3 PX4 . . . C 3 -18.075 72.03 151.775 1 119.53 ? O3 PX4 1402 A 1 HETATM 5 C C1 PX4 . . . C 3 -18.555 73.34 152.084 1 121.26 ? C1 PX4 1402 A 1 HETATM 6 C C2 PX4 . . . C 3 -20.085 73.291 152.146 1 122.29 ? C2 PX4 1402 A 1 HETATM 7 N N1 PX4 . . . C 3 -20.689 74.53 152.683 1 123.08 ? N1 PX4 1402 A 1 HETATM 8 C C3 PX4 . . . C 3 -19.957 75.719 152.212 1 120.67 ? C3 PX4 1402 A 1 HETATM 9 C C4 PX4 . . . C 3 -22.089 74.616 152.232 1 121.87 ? C4 PX4 1402 A 1 HETATM 10 C C5 PX4 . . . C 3 -20.681 74.493 154.153 1 122.03 ? C5 PX4 1402 A 1 HETATM 11 O O4 PX4 . . . C 3 -16.422 70.229 152.065 1 111.11 ? O4 PX4 1402 A 1 HETATM 12 C C6 PX4 . . . C 3 -16.159 69.019 151.348 1 103.62 ? C6 PX4 1402 A 1 HETATM 13 C C7 PX4 . . . C 3 -15.413 68.066 152.276 1 92.79 ? C7 PX4 1402 A 1 HETATM 14 C C8 PX4 . . . C 3 -14.582 68.967 153.186 1 90.53 ? C8 PX4 1402 A 1 HETATM 15 O O5 PX4 . . . C 3 -13.828 68.19 154.112 1 89.45 ? O5 PX4 1402 A 1 HETATM 16 C C9 PX4 . . . C 3 -13.553 68.67 155.461 1 75.52 ? C9 PX4 1402 A 1 HETATM 17 O O6 PX4 . . . C 3 -14.102 69.674 155.88 1 74.96 ? O6 PX4 1402 A 1 HETATM 18 C C10 PX4 . . . C 3 -12.594 67.908 156.339 1 63.37 ? C10 PX4 1402 A 1 HETATM 19 C C11 PX4 . . . C 3 -13.34 67.091 157.384 1 48.53 ? C11 PX4 1402 A 1 HETATM 20 C C12 PX4 . . . C 3 -12.962 65.624 157.245 1 36.92 ? C12 PX4 1402 A 1 HETATM 21 C C13 PX4 . . . C 3 -12.893 64.987 158.626 1 32.33 ? C13 PX4 1402 A 1 HETATM 22 C C14 PX4 . . . C 3 -13.814 63.78 158.7 1 30.88 ? C14 PX4 1402 A 1 HETATM 23 C C15 PX4 . . . C 3 -14.031 63.427 160.16 1 28.27 ? C15 PX4 1402 A 1 HETATM 24 C C16 PX4 . . . C 3 -13.595 61.999 160.417 1 21.25 ? C16 PX4 1402 A 1 HETATM 25 C C17 PX4 . . . C 3 -13.558 61.716 161.907 1 20.78 ? C17 PX4 1402 A 1 HETATM 26 C C18 PX4 . . . C 3 -12.179 62.047 162.476 1 26.15 ? C18 PX4 1402 A 1 HETATM 27 C C19 PX4 . . . C 3 -11.365 60.796 162.762 1 18.92 ? C19 PX4 1402 A 1 HETATM 28 C C20 PX4 . . . C 3 -9.88 61.14 162.809 1 32.76 ? C20 PX4 1402 A 1 HETATM 29 C C21 PX4 . . . C 3 -9.051 59.919 163.208 1 34.96 ? C21 PX4 1402 A 1 HETATM 30 C C22 PX4 . . . C 3 -7.644 59.949 162.632 1 25.51 ? C22 PX4 1402 A 1 HETATM 31 O O7 PX4 . . . C 3 -16.325 67.275 153.055 1 82.08 ? O7 PX4 1402 A 1 HETATM 32 C C23 PX4 . . . C 3 -15.986 65.846 153.069 1 68.97 ? C23 PX4 1402 A 1 HETATM 33 O O8 PX4 . . . C 3 -15.365 65.412 152.118 1 70.77 ? O8 PX4 1402 A 1 HETATM 34 C C24 PX4 . . . C 3 -16.377 64.943 154.243 1 54.67 ? C24 PX4 1402 A 1 HETATM 35 C C25 PX4 . . . C 3 -15.987 63.461 154.111 1 38.16 ? C25 PX4 1402 A 1 HETATM 36 C C26 PX4 . . . C 3 -16.243 62.656 155.399 1 31.81 ? C26 PX4 1402 A 1 HETATM 37 C C27 PX4 . . . C 3 -15.761 61.194 155.316 1 29.8 ? C27 PX4 1402 A 1 HETATM 38 C C28 PX4 . . . C 3 -16.053 60.36 156.568 1 29.52 ? C28 PX4 1402 A 1 HETATM 39 C C29 PX4 . . . C 3 -15.564 58.904 156.474 1 22.84 ? C29 PX4 1402 A 1 HETATM 40 C C30 PX4 . . . C 3 -15.917 58.061 157.709 1 26.54 ? C30 PX4 1402 A 1 HETATM 41 C C31 PX4 . . . C 3 -14.926 56.927 158.069 1 35.08 ? C31 PX4 1402 A 1 HETATM 42 C C32 PX4 . . . C 3 -13.687 57.482 158.789 1 45.08 ? C32 PX4 1402 A 1 HETATM 43 C C33 PX4 . . . C 3 -12.875 56.487 159.631 1 45.07 ? C33 PX4 1402 A 1 HETATM 44 C C34 PX4 . . . C 3 -11.452 56.995 159.885 1 41.96 ? C34 PX4 1402 A 1 HETATM 45 C C35 PX4 . . . C 3 -10.802 56.555 161.2 1 33.83 ? C35 PX4 1402 A 1 HETATM 46 C C36 PX4 . . . C 3 -9.521 55.769 160.967 1 18.96 ? C36 PX4 1402 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #