data_4ZXI # _model_server_result.job_id Cz_QmM8mYycVm_toYNzsPA _model_server_result.datetime_utc '2024-11-13 11:59:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 4ZXI # _exptl.entry_id 4ZXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZXI _cell.length_a 116.1 _cell.length_b 116.1 _cell.length_c 342.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N HIS 2 A HIS 0 1_555 F NI NI . A NI 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc2 A ND1 HIS 2 A HIS 0 1_555 F NI NI . A NI 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 A OG1 THR 766 A THR 764 1_555 G MG MG . A MG 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? covale ? covale1 A OG SER 1008 A SER 1006 1_555 B P24 PNS . A PNS 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? metalc ? metalc4 C O GLY . A GLY 1402 1_555 G MG MG . A MG 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc5 D O5' AMP . A AMP 1403 1_555 G MG MG . A MG 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc6 A NE2 HIS 526 A HIS 524 1_555 F NI NI . A NI 1405 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZXI _atom_sites.fract_transf_matrix[1][1] 0.008613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PNS A 1 1401 1319 PNS PNS . C 3 GLY A 1 1402 1 GLY GLY . D 4 AMP A 1 1403 2 AMP AMP . E 5 XP4 A 1 1404 1 XP4 XP4 . F 6 NI A 1 1405 1 NI NI . G 7 MG A 1 1406 1 MG MG . H 8 HOH A 1 1501 1 HOH HOH . H 8 HOH A 2 1502 6 HOH HOH . H 8 HOH A 3 1503 10 HOH HOH . H 8 HOH A 4 1504 11 HOH HOH . H 8 HOH A 5 1505 14 HOH HOH . H 8 HOH A 6 1506 2 HOH HOH . H 8 HOH A 7 1507 16 HOH HOH . H 8 HOH A 8 1508 7 HOH HOH . H 8 HOH A 9 1509 8 HOH HOH . H 8 HOH A 10 1510 12 HOH HOH . H 8 HOH A 11 1511 3 HOH HOH . H 8 HOH A 12 1512 13 HOH HOH . H 8 HOH A 13 1513 9 HOH HOH . H 8 HOH A 14 1514 4 HOH HOH . H 8 HOH A 15 1515 5 HOH HOH . H 8 HOH A 16 1516 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . B 2 -19.487 -48.458 -6.187 1 45.24 ? O23 PNS 1401 A 1 HETATM 2 P P24 PNS . . . B 2 -18.651 -48.771 -4.958 1 56 ? P24 PNS 1401 A 1 HETATM 3 O O25 PNS . . . B 2 -19.102 -48.187 -3.652 1 58.02 ? O25 PNS 1401 A 1 HETATM 4 O O27 PNS . . . B 2 -17.141 -48.224 -5.209 1 60.05 ? O27 PNS 1401 A 1 HETATM 5 C C28 PNS . . . B 2 -16.362 -48.664 -6.331 1 41.88 ? C28 PNS 1401 A 1 HETATM 6 C C29 PNS . . . B 2 -15.094 -47.827 -6.433 1 35.94 ? C29 PNS 1401 A 1 HETATM 7 C C30 PNS . . . B 2 -14.3 -48.203 -5.189 1 36.83 ? C30 PNS 1401 A 1 HETATM 8 C C31 PNS . . . B 2 -15.462 -46.35 -6.449 1 22.68 ? C31 PNS 1401 A 1 HETATM 9 C C32 PNS . . . B 2 -14.308 -48.198 -7.701 1 39.04 ? C32 PNS 1401 A 1 HETATM 10 O O33 PNS . . . B 2 -15.202 -48.216 -8.826 1 33.3 ? O33 PNS 1401 A 1 HETATM 11 C C34 PNS . . . B 2 -13.076 -47.334 -7.952 1 40.39 ? C34 PNS 1401 A 1 HETATM 12 O O35 PNS . . . B 2 -12.153 -47.278 -7.138 1 43.46 ? O35 PNS 1401 A 1 HETATM 13 N N36 PNS . . . B 2 -12.968 -46.676 -9.109 1 37.56 ? N36 PNS 1401 A 1 HETATM 14 C C37 PNS . . . B 2 -11.838 -45.833 -9.497 1 34.68 ? C37 PNS 1401 A 1 HETATM 15 C C38 PNS . . . B 2 -10.69 -46.719 -10.017 1 36.15 ? C38 PNS 1401 A 1 HETATM 16 C C39 PNS . . . B 2 -9.557 -45.809 -10.451 1 55.62 ? C39 PNS 1401 A 1 HETATM 17 O O40 PNS . . . B 2 -9.679 -44.6 -10.351 1 71.01 ? O40 PNS 1401 A 1 HETATM 18 N N41 PNS . . . B 2 -8.419 -46.307 -10.927 1 66.31 ? N41 PNS 1401 A 1 HETATM 19 C C42 PNS . . . B 2 -7.279 -45.489 -11.377 1 72.86 ? C42 PNS 1401 A 1 HETATM 20 C C43 PNS . . . B 2 -6.107 -45.748 -10.409 1 75.9 ? C43 PNS 1401 A 1 HETATM 21 S S44 PNS . . . B 2 -4.484 -45.782 -11.241 1 90.93 ? S44 PNS 1401 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #