data_4ZXI # _model_server_result.job_id KxSNHZDyQDBH7w8vF5a8xw _model_server_result.datetime_utc '2024-11-28 14:49:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1403}' # _entry.id 4ZXI # _exptl.entry_id 4ZXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZXI _cell.length_a 116.1 _cell.length_b 116.1 _cell.length_c 342.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N HIS 2 A HIS 0 1_555 F NI NI . A NI 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc2 A ND1 HIS 2 A HIS 0 1_555 F NI NI . A NI 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 A OG1 THR 766 A THR 764 1_555 G MG MG . A MG 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? covale ? covale1 A OG SER 1008 A SER 1006 1_555 B P24 PNS . A PNS 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? metalc ? metalc4 C O GLY . A GLY 1402 1_555 G MG MG . A MG 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc5 D O5' AMP . A AMP 1403 1_555 G MG MG . A MG 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc6 A NE2 HIS 526 A HIS 524 1_555 F NI NI . A NI 1405 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZXI _atom_sites.fract_transf_matrix[1][1] 0.008613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PNS A 1 1401 1319 PNS PNS . C 3 GLY A 1 1402 1 GLY GLY . D 4 AMP A 1 1403 2 AMP AMP . E 5 XP4 A 1 1404 1 XP4 XP4 . F 6 NI A 1 1405 1 NI NI . G 7 MG A 1 1406 1 MG MG . H 8 HOH A 1 1501 1 HOH HOH . H 8 HOH A 2 1502 6 HOH HOH . H 8 HOH A 3 1503 10 HOH HOH . H 8 HOH A 4 1504 11 HOH HOH . H 8 HOH A 5 1505 14 HOH HOH . H 8 HOH A 6 1506 2 HOH HOH . H 8 HOH A 7 1507 16 HOH HOH . H 8 HOH A 8 1508 7 HOH HOH . H 8 HOH A 9 1509 8 HOH HOH . H 8 HOH A 10 1510 12 HOH HOH . H 8 HOH A 11 1511 3 HOH HOH . H 8 HOH A 12 1512 13 HOH HOH . H 8 HOH A 13 1513 9 HOH HOH . H 8 HOH A 14 1514 4 HOH HOH . H 8 HOH A 15 1515 5 HOH HOH . H 8 HOH A 16 1516 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 4 -42.292 -28.509 -37.961 1 96.48 ? P AMP 1403 A 1 HETATM 2 O O1P AMP . . . D 4 -43.421 -28.654 -38.985 1 90.94 ? O1P AMP 1403 A 1 HETATM 3 O O2P AMP . . . D 4 -42.283 -27.15 -37.271 1 91.81 ? O2P AMP 1403 A 1 HETATM 4 O O3P AMP . . . D 4 -42.088 -29.713 -37.048 1 76.43 ? O3P AMP 1403 A 1 HETATM 5 O O5' AMP . . . D 4 -40.952 -28.433 -38.843 1 119.39 ? O5' AMP 1403 A 1 HETATM 6 C C5' AMP . . . D 4 -40.377 -29.578 -39.483 1 104.5 ? C5' AMP 1403 A 1 HETATM 7 C C4' AMP . . . D 4 -39.109 -30.046 -38.798 1 86.71 ? C4' AMP 1403 A 1 HETATM 8 O O4' AMP . . . D 4 -38.985 -31.477 -38.907 1 78.48 ? O4' AMP 1403 A 1 HETATM 9 C C3' AMP . . . D 4 -37.777 -29.558 -39.351 1 78.82 ? C3' AMP 1403 A 1 HETATM 10 O O3' AMP . . . D 4 -37.461 -28.227 -38.988 1 85.27 ? O3' AMP 1403 A 1 HETATM 11 C C2' AMP . . . D 4 -36.789 -30.569 -38.771 1 67.58 ? C2' AMP 1403 A 1 HETATM 12 O O2' AMP . . . D 4 -36.412 -30.197 -37.455 1 64.05 ? O2' AMP 1403 A 1 HETATM 13 C C1' AMP . . . D 4 -37.641 -31.838 -38.671 1 63.28 ? C1' AMP 1403 A 1 HETATM 14 N N9 AMP . . . D 4 -37.219 -32.837 -39.66 1 49.59 ? N9 AMP 1403 A 1 HETATM 15 C C8 AMP . . . D 4 -37.569 -32.877 -40.956 1 46.65 ? C8 AMP 1403 A 1 HETATM 16 N N7 AMP . . . D 4 -36.986 -33.926 -41.589 1 40.91 ? N7 AMP 1403 A 1 HETATM 17 C C5 AMP . . . D 4 -36.235 -34.572 -40.682 1 41.96 ? C5 AMP 1403 A 1 HETATM 18 C C6 AMP . . . D 4 -35.337 -35.752 -40.695 1 38.96 ? C6 AMP 1403 A 1 HETATM 19 N N6 AMP . . . D 4 -35.134 -36.478 -41.832 1 34.16 ? N6 AMP 1403 A 1 HETATM 20 N N1 AMP . . . D 4 -34.731 -36.076 -39.533 1 42.06 ? N1 AMP 1403 A 1 HETATM 21 C C2 AMP . . . D 4 -34.929 -35.361 -38.41 1 51.72 ? C2 AMP 1403 A 1 HETATM 22 N N3 AMP . . . D 4 -35.724 -34.273 -38.327 1 54.61 ? N3 AMP 1403 A 1 HETATM 23 C C4 AMP . . . D 4 -36.387 -33.839 -39.417 1 47.28 ? C4 AMP 1403 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #