data_4ZXX # _model_server_result.job_id hWDVy0YHOsnEmlMzrUQpXg _model_server_result.datetime_utc '2025-09-10 12:24:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4ZXX # _exptl.entry_id 4ZXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZXX _cell.length_a 95.28 _cell.length_b 95.28 _cell.length_c 118.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 H CYS 22 1_555 A SG CYS 12 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 26 H CYS 42 1_555 A SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 110 H CYS 122 1_555 B SG CYS 46 L CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 158 H CYS 168 1_555 A SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 A SG CYS 188 H CYS 191 1_555 A SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 B SG CYS 2 L CYS 91 1_555 B SG CYS 13 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 9 L CYS 98 1_555 B SG CYS 23 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 B SG CYS 25 L CYS 114 1_555 B SG CYS 38 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OE1 GLU 58 H GLU 70 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A O ASP 60 H ASP 72 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc3 A O GLU 63 H GLU 75 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc4 A OE1 GLU 68 H GLU 80 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 D CA CA . H CA 302 1_555 H O HOH . H HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc6 D CA CA . H CA 302 1_555 H O HOH . H HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZXX _atom_sites.fract_transf_matrix[1][1] 0.010495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4T0 H 1 301 301 4T0 4T0 . D 4 CA H 1 302 302 CA CA . E 5 SO4 H 1 303 303 SO4 SO4 . F 5 SO4 H 1 304 304 SO4 SO4 . G 5 SO4 H 1 305 305 SO4 SO4 . H 6 HOH H 1 401 401 HOH HOH . H 6 HOH H 2 402 402 HOH HOH . H 6 HOH H 3 403 405 HOH HOH . H 6 HOH H 4 404 408 HOH HOH . H 6 HOH H 5 405 403 HOH HOH . H 6 HOH H 6 406 404 HOH HOH . H 6 HOH H 7 407 407 HOH HOH . H 6 HOH H 8 408 410 HOH HOH . H 6 HOH H 9 409 413 HOH HOH . H 6 HOH H 10 410 409 HOH HOH . H 6 HOH H 11 411 412 HOH HOH . H 6 HOH H 12 412 411 HOH HOH . H 6 HOH H 13 413 416 HOH HOH . H 6 HOH H 14 414 419 HOH HOH . H 6 HOH H 15 415 406 HOH HOH . H 6 HOH H 16 416 414 HOH HOH . H 6 HOH H 17 417 418 HOH HOH . H 6 HOH H 18 418 421 HOH HOH . H 6 HOH H 19 419 420 HOH HOH . H 6 HOH H 20 420 417 HOH HOH . H 6 HOH H 21 421 427 HOH HOH . H 6 HOH H 22 422 426 HOH HOH . H 6 HOH H 23 423 422 HOH HOH . H 6 HOH H 24 424 415 HOH HOH . H 6 HOH H 25 425 423 HOH HOH . H 6 HOH H 26 426 425 HOH HOH . H 6 HOH H 27 427 428 HOH HOH . H 6 HOH H 28 428 429 HOH HOH . H 6 HOH H 29 429 424 HOH HOH . H 6 HOH H 30 430 432 HOH HOH . H 6 HOH H 31 431 430 HOH HOH . H 6 HOH H 32 432 434 HOH HOH . H 6 HOH H 33 433 431 HOH HOH . H 6 HOH H 34 434 438 HOH HOH . H 6 HOH H 35 435 433 HOH HOH . H 6 HOH H 36 436 437 HOH HOH . H 6 HOH H 37 437 436 HOH HOH . H 6 HOH H 38 438 441 HOH HOH . H 6 HOH H 39 439 440 HOH HOH . H 6 HOH H 40 440 439 HOH HOH . H 6 HOH H 41 441 435 HOH HOH . H 6 HOH H 42 442 443 HOH HOH . H 6 HOH H 43 443 442 HOH HOH . H 6 HOH H 44 444 444 HOH HOH . H 6 HOH H 45 445 445 HOH HOH . H 6 HOH H 46 446 446 HOH HOH . H 6 HOH H 47 447 447 HOH HOH . H 6 HOH H 48 448 448 HOH HOH . H 6 HOH H 49 449 449 HOH HOH . H 6 HOH H 50 450 450 HOH HOH . H 6 HOH H 51 451 451 HOH HOH . H 6 HOH H 52 452 452 HOH HOH . I 6 HOH L 1 201 201 HOH HOH . I 6 HOH L 2 202 202 HOH HOH . I 6 HOH L 3 203 204 HOH HOH . I 6 HOH L 4 204 203 HOH HOH . I 6 HOH L 5 205 206 HOH HOH . I 6 HOH L 6 206 205 HOH HOH . I 6 HOH L 7 207 207 HOH HOH . I 6 HOH L 8 208 209 HOH HOH . I 6 HOH L 9 209 211 HOH HOH . I 6 HOH L 10 210 210 HOH HOH . I 6 HOH L 11 211 208 HOH HOH . I 6 HOH L 12 212 213 HOH HOH . I 6 HOH L 13 213 212 HOH HOH . I 6 HOH L 14 214 214 HOH HOH . I 6 HOH L 15 215 219 HOH HOH . I 6 HOH L 16 216 215 HOH HOH . I 6 HOH L 17 217 216 HOH HOH . I 6 HOH L 18 218 217 HOH HOH . I 6 HOH L 19 219 218 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 29.617 _atom_site.Cartn_y 38.049 _atom_site.Cartn_z 15.653 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.42 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 122 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #