data_4ZY4 # _model_server_result.job_id 4ssUBnwGTlJRCyQayr1KPQ _model_server_result.datetime_utc '2025-02-05 04:39:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4ZY4 # _exptl.entry_id 4ZY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-aminopiperidin-1-yl)-N-(5-cyclopropyl-1H-pyrazol-3-yl)thieno[3,2-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.99 _cell.angle_gamma 90 _cell.entry_id 4ZY4 _cell.length_a 62.886 _cell.length_b 81.266 _cell.length_c 65.598 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 113 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 360 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 113 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 360 _struct_conn.ptnr2_symmetry 1_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N7 S' _chem_comp.formula_weight 355.461 _chem_comp.id 4T3 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-aminopiperidin-1-yl)-N-(5-cyclopropyl-1H-pyrazol-3-yl)thieno[3,2-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S3 C2 4T3 sing 1 n y S3 C4 4T3 sing 2 n y C2 C1 4T3 doub 3 n y N16 N14 4T3 sing 4 n y N16 C11 4T3 doub 5 n y N10 C11 4T3 sing 6 n n N10 C9 4T3 sing 7 n n C4 C9 4T3 doub 8 n y C4 C5 4T3 sing 9 n y C1 C5 4T3 sing 10 n y N14 C13 4T3 sing 11 n y C11 C12 4T3 sing 12 n y C9 N8 4T3 sing 13 n y C5 N6 4T3 doub 14 n y C13 C12 4T3 doub 15 n y C13 C17 4T3 sing 16 n n N8 C7 4T3 doub 17 n y N6 C7 4T3 sing 18 n y C7 N20 4T3 sing 19 n n C17 C19 4T3 sing 20 n n C17 C18 4T3 sing 21 n n N20 C21 4T3 sing 22 n n N20 C25 4T3 sing 23 n n C19 C18 4T3 sing 24 n n C21 C22 4T3 sing 25 n n C25 C24 4T3 sing 26 n n C22 C23 4T3 sing 27 n n C24 C23 4T3 sing 28 n n C23 N26 4T3 sing 29 n n C17 H1 4T3 sing 30 n n C21 H2 4T3 sing 31 n n C21 H3 4T3 sing 32 n n C22 H4 4T3 sing 33 n n C22 H5 4T3 sing 34 n n C24 H6 4T3 sing 35 n n C24 H7 4T3 sing 36 n n C1 H8 4T3 sing 37 n n C2 H9 4T3 sing 38 n n N10 H10 4T3 sing 39 n n C12 H11 4T3 sing 40 n n N14 H12 4T3 sing 41 n n C18 H13 4T3 sing 42 n n C18 H14 4T3 sing 43 n n C19 H15 4T3 sing 44 n n C19 H16 4T3 sing 45 n n C23 H17 4T3 sing 46 n n C25 H18 4T3 sing 47 n n C25 H19 4T3 sing 48 n n N26 H20 4T3 sing 49 n n N26 H21 4T3 sing 50 n n # _atom_sites.entry_id 4ZY4 _atom_sites.fract_transf_matrix[1][1] 0.015902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004558 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4T3 A 1 601 1 4T3 LIG . D 3 SO4 A 1 602 1 SO4 SO4 . E 2 4T3 B 1 601 1 4T3 LIG . F 4 DMS B 1 602 1 DMS DMS . G 5 HOH A 1 701 42 HOH HOH . G 5 HOH A 2 702 54 HOH HOH . G 5 HOH A 3 703 52 HOH HOH . G 5 HOH A 4 704 10 HOH HOH . G 5 HOH A 5 705 53 HOH HOH . G 5 HOH A 6 706 8 HOH HOH . G 5 HOH A 7 707 56 HOH HOH . G 5 HOH A 8 708 41 HOH HOH . G 5 HOH A 9 709 7 HOH HOH . G 5 HOH A 10 710 6 HOH HOH . G 5 HOH A 11 711 51 HOH HOH . G 5 HOH A 12 712 9 HOH HOH . G 5 HOH A 13 713 1 HOH HOH . G 5 HOH A 14 714 30 HOH HOH . G 5 HOH A 15 715 5 HOH HOH . G 5 HOH A 16 716 4 HOH HOH . G 5 HOH A 17 717 58 HOH HOH . G 5 HOH A 18 718 43 HOH HOH . G 5 HOH A 19 719 3 HOH HOH . G 5 HOH A 20 720 55 HOH HOH . G 5 HOH A 21 721 57 HOH HOH . G 5 HOH A 22 722 40 HOH HOH . H 5 HOH B 1 701 24 HOH HOH . H 5 HOH B 2 702 32 HOH HOH . H 5 HOH B 3 703 39 HOH HOH . H 5 HOH B 4 704 12 HOH HOH . H 5 HOH B 5 705 37 HOH HOH . H 5 HOH B 6 706 26 HOH HOH . H 5 HOH B 7 707 28 HOH HOH . H 5 HOH B 8 708 15 HOH HOH . H 5 HOH B 9 709 48 HOH HOH . H 5 HOH B 10 710 36 HOH HOH . H 5 HOH B 11 711 19 HOH HOH . H 5 HOH B 12 712 23 HOH HOH . H 5 HOH B 13 713 22 HOH HOH . H 5 HOH B 14 714 29 HOH HOH . H 5 HOH B 15 715 13 HOH HOH . H 5 HOH B 16 716 38 HOH HOH . H 5 HOH B 17 717 20 HOH HOH . H 5 HOH B 18 718 18 HOH HOH . H 5 HOH B 19 719 14 HOH HOH . H 5 HOH B 20 720 11 HOH HOH . H 5 HOH B 21 721 17 HOH HOH . H 5 HOH B 22 722 49 HOH HOH . H 5 HOH B 23 723 31 HOH HOH . H 5 HOH B 24 724 50 HOH HOH . H 5 HOH B 25 725 27 HOH HOH . H 5 HOH B 26 726 44 HOH HOH . H 5 HOH B 27 727 45 HOH HOH . H 5 HOH B 28 728 47 HOH HOH . H 5 HOH B 29 729 16 HOH HOH . H 5 HOH B 30 730 21 HOH HOH . H 5 HOH B 31 731 35 HOH HOH . H 5 HOH B 32 732 25 HOH HOH . H 5 HOH B 33 733 34 HOH HOH . H 5 HOH B 34 734 33 HOH HOH . H 5 HOH B 35 735 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4T3 . . . C 2 12.69 -14.063 17.131 1 42.92 ? C4 4T3 601 A 1 HETATM 2 C C5 4T3 . . . C 2 11.929 -12.991 16.663 1 41.62 ? C5 4T3 601 A 1 HETATM 3 C C7 4T3 . . . C 2 13.709 -12.374 15.303 1 45.98 ? C7 4T3 601 A 1 HETATM 4 C C13 4T3 . . . C 2 17.443 -16.174 14.834 1 48.46 ? C13 4T3 601 A 1 HETATM 5 C C17 4T3 . . . C 2 18.207 -16.14 13.534 1 46.75 ? C17 4T3 601 A 1 HETATM 6 C C21 4T3 . . . C 2 15.641 -11.666 13.946 1 40.88 ? C21 4T3 601 A 1 HETATM 7 C C22 4T3 . . . C 2 16.306 -10.291 13.97 1 39.08 ? C22 4T3 601 A 1 HETATM 8 C C24 4T3 . . . C 2 14.067 -9.201 13.649 1 36.24 ? C24 4T3 601 A 1 HETATM 9 C C1 4T3 . . . C 2 10.657 -12.941 17.245 1 43.64 ? C1 4T3 601 A 1 HETATM 10 C C2 4T3 . . . C 2 10.385 -13.887 18.125 1 46.08 ? C2 4T3 601 A 1 HETATM 11 S S3 4T3 . . . C 2 11.751 -14.967 18.306 1 53.25 ? S3 4T3 601 A 1 HETATM 12 N N6 4T3 . . . C 2 12.483 -12.167 15.745 1 45.77 ? N6 4T3 601 A 1 HETATM 13 N N8 4T3 . . . C 2 14.457 -13.383 15.737 1 45.59 ? N8 4T3 601 A 1 HETATM 14 C C9 4T3 . . . C 2 13.997 -14.247 16.637 1 45.05 ? C9 4T3 601 A 1 HETATM 15 N N10 4T3 . . . C 2 14.774 -15.308 17.094 1 44.5 ? N10 4T3 601 A 1 HETATM 16 C C11 4T3 . . . C 2 15.907 -15.79 16.413 1 49.51 ? C11 4T3 601 A 1 HETATM 17 C C12 4T3 . . . C 2 16.306 -15.497 15.096 1 49.09 ? C12 4T3 601 A 1 HETATM 18 N N14 4T3 . . . C 2 17.762 -16.887 15.935 1 49.58 ? N14 4T3 601 A 1 HETATM 19 N N16 4T3 . . . C 2 16.786 -16.631 16.907 1 51.97 ? N16 4T3 601 A 1 HETATM 20 C C18 4T3 . . . C 2 17.9 -14.99 12.577 1 45.93 ? C18 4T3 601 A 1 HETATM 21 C C19 4T3 . . . C 2 19.235 -15.027 13.325 1 45.31 ? C19 4T3 601 A 1 HETATM 22 N N20 4T3 . . . C 2 14.248 -11.508 14.361 1 40.46 ? N20 4T3 601 A 1 HETATM 23 C C23 4T3 . . . C 2 15.494 -9.323 13.105 1 38.17 ? C23 4T3 601 A 1 HETATM 24 C C25 4T3 . . . C 2 13.393 -10.574 13.626 1 36.68 ? C25 4T3 601 A 1 HETATM 25 N N26 4T3 . . . C 2 16.146 -8.007 13.119 1 40.93 ? N26 4T3 601 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 422 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #