data_4ZY5 # _model_server_result.job_id HnyN6ES2jaLweIku-zy9eQ _model_server_result.datetime_utc '2025-02-24 15:50:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zy5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4ZY5 # _exptl.entry_id 4ZY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 327.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(trans-4-aminocyclohexyl)methyl]-N~4~-(3-cyclopropyl-1H-pyrazol-5-yl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.04 _cell.angle_gamma 90 _cell.entry_id 4ZY5 _cell.length_a 62.566 _cell.length_b 81.9 _cell.length_c 65.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 113 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 360 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 113 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 360 _struct_conn.ptnr2_symmetry 1_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H25 N7' _chem_comp.formula_weight 327.427 _chem_comp.id 4T5 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(trans-4-aminocyclohexyl)methyl]-N~4~-(3-cyclopropyl-1H-pyrazol-5-yl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N20 C19 4T5 sing 1 n y N20 N22 4T5 sing 2 n y C1 C6 4T5 doub 3 n y C1 C2 4T5 sing 4 n y N18 C19 4T5 sing 5 n n N18 C2 4T5 sing 6 n n C19 C24 4T5 doub 7 n y C6 N5 4T5 sing 8 n y C2 N3 4T5 doub 9 n y N22 C23 4T5 doub 10 n y C24 C23 4T5 sing 11 n y N5 C4 4T5 doub 12 n y C23 C25 4T5 sing 13 n n N3 C4 4T5 sing 14 n y C4 N7 4T5 sing 15 n n C25 C27 4T5 sing 16 n n C25 C26 4T5 sing 17 n n N7 C8 4T5 sing 18 n n C27 C26 4T5 sing 19 n n C11 C12 4T5 sing 20 n n C11 C9 4T5 sing 21 n n C8 C9 4T5 sing 22 n n C12 C13 4T5 sing 23 n n C9 C16 4T5 sing 24 n n C13 N17 4T5 sing 25 n n C13 C15 4T5 sing 26 n n C16 C15 4T5 sing 27 n n C6 H1 4T5 sing 28 n n C8 H2 4T5 sing 29 n n C8 H3 4T5 sing 30 n n C13 H4 4T5 sing 31 n n C15 H5 4T5 sing 32 n n C15 H6 4T5 sing 33 n n C24 H7 4T5 sing 34 n n C26 H8 4T5 sing 35 n n C26 H9 4T5 sing 36 n n C1 H10 4T5 sing 37 n n N7 H11 4T5 sing 38 n n C9 H12 4T5 sing 39 n n C11 H13 4T5 sing 40 n n C11 H14 4T5 sing 41 n n C12 H15 4T5 sing 42 n n C12 H16 4T5 sing 43 n n C16 H17 4T5 sing 44 n n C16 H18 4T5 sing 45 n n N17 H19 4T5 sing 46 n n N17 H21 4T5 sing 47 n n N18 H22 4T5 sing 48 n n N20 H23 4T5 sing 49 n n C25 H24 4T5 sing 50 n n C27 H25 4T5 sing 51 n n C27 H26 4T5 sing 52 n n # _atom_sites.entry_id 4ZY5 _atom_sites.fract_transf_matrix[1][1] 0.015983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004594 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4T5 A 1 601 1 4T5 4T5 . D 3 SO4 A 1 602 1 SO4 SO4 . E 3 SO4 A 1 603 5 SO4 SO4 . F 2 4T5 B 1 601 1 4T5 4T5 . G 4 DMS B 1 602 1 DMS DMS . H 5 HOH A 1 701 43 HOH HOH . H 5 HOH A 2 702 29 HOH HOH . H 5 HOH A 3 703 7 HOH HOH . H 5 HOH A 4 704 3 HOH HOH . H 5 HOH A 5 705 25 HOH HOH . H 5 HOH A 6 706 61 HOH HOH . H 5 HOH A 7 707 33 HOH HOH . H 5 HOH A 8 708 19 HOH HOH . H 5 HOH A 9 709 12 HOH HOH . H 5 HOH A 10 710 60 HOH HOH . H 5 HOH A 11 711 6 HOH HOH . H 5 HOH A 12 712 15 HOH HOH . H 5 HOH A 13 713 35 HOH HOH . H 5 HOH A 14 714 50 HOH HOH . H 5 HOH A 15 715 31 HOH HOH . H 5 HOH A 16 716 48 HOH HOH . H 5 HOH A 17 717 44 HOH HOH . H 5 HOH A 18 718 32 HOH HOH . H 5 HOH A 19 719 55 HOH HOH . H 5 HOH A 20 720 53 HOH HOH . H 5 HOH A 21 721 45 HOH HOH . I 5 HOH B 1 701 24 HOH HOH . I 5 HOH B 2 702 17 HOH HOH . I 5 HOH B 3 703 8 HOH HOH . I 5 HOH B 4 704 47 HOH HOH . I 5 HOH B 5 705 30 HOH HOH . I 5 HOH B 6 706 1 HOH HOH . I 5 HOH B 7 707 2 HOH HOH . I 5 HOH B 8 708 49 HOH HOH . I 5 HOH B 9 709 27 HOH HOH . I 5 HOH B 10 710 39 HOH HOH . I 5 HOH B 11 711 4 HOH HOH . I 5 HOH B 12 712 10 HOH HOH . I 5 HOH B 13 713 20 HOH HOH . I 5 HOH B 14 714 18 HOH HOH . I 5 HOH B 15 715 46 HOH HOH . I 5 HOH B 16 716 21 HOH HOH . I 5 HOH B 17 717 58 HOH HOH . I 5 HOH B 18 718 16 HOH HOH . I 5 HOH B 19 719 11 HOH HOH . I 5 HOH B 20 720 28 HOH HOH . I 5 HOH B 21 721 59 HOH HOH . I 5 HOH B 22 722 40 HOH HOH . I 5 HOH B 23 723 9 HOH HOH . I 5 HOH B 24 724 63 HOH HOH . I 5 HOH B 25 725 37 HOH HOH . I 5 HOH B 26 726 5 HOH HOH . I 5 HOH B 27 727 41 HOH HOH . I 5 HOH B 28 728 13 HOH HOH . I 5 HOH B 29 729 42 HOH HOH . I 5 HOH B 30 730 23 HOH HOH . I 5 HOH B 31 731 51 HOH HOH . I 5 HOH B 32 732 38 HOH HOH . I 5 HOH B 33 733 14 HOH HOH . I 5 HOH B 34 734 26 HOH HOH . I 5 HOH B 35 735 34 HOH HOH . I 5 HOH B 36 736 52 HOH HOH . I 5 HOH B 37 737 62 HOH HOH . I 5 HOH B 38 738 36 HOH HOH . I 5 HOH B 39 739 54 HOH HOH . I 5 HOH B 40 740 57 HOH HOH . I 5 HOH B 41 741 56 HOH HOH . I 5 HOH B 42 742 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 4T5 . . . C 2 13.864 -13.678 15.412 1 53.15 ? N3 4T5 601 A 1 HETATM 2 C C4 4T5 . . . C 2 12.908 -12.909 14.908 1 55.49 ? C4 4T5 601 A 1 HETATM 3 C C6 4T5 . . . C 2 11.39 -13.617 16.497 1 52.43 ? C6 4T5 601 A 1 HETATM 4 C C8 4T5 . . . C 2 14.418 -12.423 13.047 1 58.67 ? C8 4T5 601 A 1 HETATM 5 C C13 4T5 . . . C 2 17.112 -9.012 13.12 1 66.38 ? C13 4T5 601 A 1 HETATM 6 C C15 4T5 . . . C 2 15.601 -8.757 13.188 1 66.99 ? C15 4T5 601 A 1 HETATM 7 C C24 4T5 . . . C 2 16.155 -15.465 15.058 1 55.44 ? C24 4T5 601 A 1 HETATM 8 C C26 4T5 . . . C 2 17.736 -15.335 12.381 1 49.49 ? C26 4T5 601 A 1 HETATM 9 C C1 4T5 . . . C 2 12.362 -14.426 17.051 1 52.29 ? C1 4T5 601 A 1 HETATM 10 C C2 4T5 . . . C 2 13.634 -14.445 16.468 1 52.33 ? C2 4T5 601 A 1 HETATM 11 N N5 4T5 . . . C 2 11.692 -12.88 15.436 1 55.99 ? N5 4T5 601 A 1 HETATM 12 N N7 4T5 . . . C 2 13.2 -12.131 13.8 1 54.64 ? N7 4T5 601 A 1 HETATM 13 C C9 4T5 . . . C 2 15.165 -11.14 12.676 1 63.78 ? C9 4T5 601 A 1 HETATM 14 C C11 4T5 . . . C 2 16.671 -11.414 12.684 1 65.86 ? C11 4T5 601 A 1 HETATM 15 C C12 4T5 . . . C 2 17.405 -10.175 12.176 1 66.39 ? C12 4T5 601 A 1 HETATM 16 C C16 4T5 . . . C 2 14.875 -10.017 13.671 1 64.16 ? C16 4T5 601 A 1 HETATM 17 N N17 4T5 . . . C 2 17.805 -7.807 12.643 1 65.43 ? N17 4T5 601 A 1 HETATM 18 N N18 4T5 . . . C 2 14.625 -15.245 17.02 1 51.78 ? N18 4T5 601 A 1 HETATM 19 C C19 4T5 . . . C 2 15.771 -15.679 16.355 1 55.28 ? C19 4T5 601 A 1 HETATM 20 N N20 4T5 . . . C 2 16.735 -16.433 16.938 1 57.17 ? N20 4T5 601 A 1 HETATM 21 N N22 4T5 . . . C 2 17.726 -16.68 15.985 1 56.64 ? N22 4T5 601 A 1 HETATM 22 C C23 4T5 . . . C 2 17.383 -16.108 14.86 1 54.79 ? C23 4T5 601 A 1 HETATM 23 C C25 4T5 . . . C 2 18.199 -16.154 13.587 1 50.73 ? C25 4T5 601 A 1 HETATM 24 C C27 4T5 . . . C 2 18.968 -14.895 13.178 1 48.75 ? C27 4T5 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #