data_4ZY5 # _model_server_result.job_id vyK9tGKmL3-FaOjuZvZPSg _model_server_result.datetime_utc '2025-02-24 15:45:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zy5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 4ZY5 # _exptl.entry_id 4ZY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.04 _cell.angle_gamma 90 _cell.entry_id 4ZY5 _cell.length_a 62.566 _cell.length_b 81.9 _cell.length_c 65.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 113 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 360 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 113 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 360 _struct_conn.ptnr2_symmetry 1_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 135 n n S C1 DMS sing 136 n n S C2 DMS sing 137 n n C1 H11 DMS sing 138 n n C1 H12 DMS sing 139 n n C1 H13 DMS sing 140 n n C2 H21 DMS sing 141 n n C2 H22 DMS sing 142 n n C2 H23 DMS sing 143 n n # _atom_sites.entry_id 4ZY5 _atom_sites.fract_transf_matrix[1][1] 0.015983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004594 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4T5 A 1 601 1 4T5 4T5 . D 3 SO4 A 1 602 1 SO4 SO4 . E 3 SO4 A 1 603 5 SO4 SO4 . F 2 4T5 B 1 601 1 4T5 4T5 . G 4 DMS B 1 602 1 DMS DMS . H 5 HOH A 1 701 43 HOH HOH . H 5 HOH A 2 702 29 HOH HOH . H 5 HOH A 3 703 7 HOH HOH . H 5 HOH A 4 704 3 HOH HOH . H 5 HOH A 5 705 25 HOH HOH . H 5 HOH A 6 706 61 HOH HOH . H 5 HOH A 7 707 33 HOH HOH . H 5 HOH A 8 708 19 HOH HOH . H 5 HOH A 9 709 12 HOH HOH . H 5 HOH A 10 710 60 HOH HOH . H 5 HOH A 11 711 6 HOH HOH . H 5 HOH A 12 712 15 HOH HOH . H 5 HOH A 13 713 35 HOH HOH . H 5 HOH A 14 714 50 HOH HOH . H 5 HOH A 15 715 31 HOH HOH . H 5 HOH A 16 716 48 HOH HOH . H 5 HOH A 17 717 44 HOH HOH . H 5 HOH A 18 718 32 HOH HOH . H 5 HOH A 19 719 55 HOH HOH . H 5 HOH A 20 720 53 HOH HOH . H 5 HOH A 21 721 45 HOH HOH . I 5 HOH B 1 701 24 HOH HOH . I 5 HOH B 2 702 17 HOH HOH . I 5 HOH B 3 703 8 HOH HOH . I 5 HOH B 4 704 47 HOH HOH . I 5 HOH B 5 705 30 HOH HOH . I 5 HOH B 6 706 1 HOH HOH . I 5 HOH B 7 707 2 HOH HOH . I 5 HOH B 8 708 49 HOH HOH . I 5 HOH B 9 709 27 HOH HOH . I 5 HOH B 10 710 39 HOH HOH . I 5 HOH B 11 711 4 HOH HOH . I 5 HOH B 12 712 10 HOH HOH . I 5 HOH B 13 713 20 HOH HOH . I 5 HOH B 14 714 18 HOH HOH . I 5 HOH B 15 715 46 HOH HOH . I 5 HOH B 16 716 21 HOH HOH . I 5 HOH B 17 717 58 HOH HOH . I 5 HOH B 18 718 16 HOH HOH . I 5 HOH B 19 719 11 HOH HOH . I 5 HOH B 20 720 28 HOH HOH . I 5 HOH B 21 721 59 HOH HOH . I 5 HOH B 22 722 40 HOH HOH . I 5 HOH B 23 723 9 HOH HOH . I 5 HOH B 24 724 63 HOH HOH . I 5 HOH B 25 725 37 HOH HOH . I 5 HOH B 26 726 5 HOH HOH . I 5 HOH B 27 727 41 HOH HOH . I 5 HOH B 28 728 13 HOH HOH . I 5 HOH B 29 729 42 HOH HOH . I 5 HOH B 30 730 23 HOH HOH . I 5 HOH B 31 731 51 HOH HOH . I 5 HOH B 32 732 38 HOH HOH . I 5 HOH B 33 733 14 HOH HOH . I 5 HOH B 34 734 26 HOH HOH . I 5 HOH B 35 735 34 HOH HOH . I 5 HOH B 36 736 52 HOH HOH . I 5 HOH B 37 737 62 HOH HOH . I 5 HOH B 38 738 36 HOH HOH . I 5 HOH B 39 739 54 HOH HOH . I 5 HOH B 40 740 57 HOH HOH . I 5 HOH B 41 741 56 HOH HOH . I 5 HOH B 42 742 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 4 2.239 -5.786 -15.007 1 129.82 ? S DMS 602 B 1 HETATM 2 O O DMS . . . G 4 3.307 -6.058 -13.995 1 129.26 ? O DMS 602 B 1 HETATM 3 C C1 DMS . . . G 4 1.096 -4.522 -14.381 1 51.61 ? C1 DMS 602 B 1 HETATM 4 C C2 DMS . . . G 4 2.954 -4.861 -16.39 1 85.09 ? C2 DMS 602 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #