data_4ZYF # _model_server_result.job_id JB4vYRoFXzuNKQ-O6tJ5mw _model_server_result.datetime_utc '2024-11-14 18:15:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4ZYF # _exptl.entry_id 4ZYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 659.257 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-1-(4-chlorophenyl)-7-isopropoxy-6-methoxy-2-(4-(methyl(((1r,4S)-4-(4-methyl-3-oxopiperazin-1-yl)cyclohexyl)methyl)amino)phenyl)-1,2-dihydroisoquinolin-3(4H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYF _cell.length_a 55.609 _cell.length_b 55.609 _cell.length_c 108.28 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H47 Cl N4 O4' _chem_comp.formula_weight 659.257 _chem_comp.id 4T4 _chem_comp.mon_nstd_flag . _chem_comp.name (S)-1-(4-chlorophenyl)-7-isopropoxy-6-methoxy-2-(4-(methyl(((1r,4S)-4-(4-methyl-3-oxopiperazin-1-yl)cyclohexyl)methyl)amino)phenyl)-1,2-dihydroisoquinolin-3(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NVP-CGM097 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C36 4T4 doub 1 n n C1 N4 4T4 sing 2 n n C36 N4 4T4 sing 3 n n C36 C37 4T4 sing 4 n n N4 C35 4T4 sing 5 n n O3 C14 4T4 doub 6 n n C37 N3 4T4 sing 7 n n C15 C14 4T4 sing 8 n n C15 C16 4T4 sing 9 n n C14 N1 4T4 sing 10 n n C35 C34 4T4 sing 11 n n C32 C33 4T4 sing 12 n n C32 C31 4T4 sing 13 n n N3 C34 4T4 sing 14 n n N3 C31 4T4 sing 15 n n C21 C16 4T4 doub 16 n y C21 C20 4T4 sing 17 n y C16 C17 4T4 sing 18 n y C5 C6 4T4 doub 19 n y C5 C4 4T4 sing 20 n y N1 C4 4T4 sing 21 n n N1 C13 4T4 sing 22 n n C33 C11 4T4 sing 23 n n C31 C30 4T4 sing 24 n n C22 O1 4T4 sing 25 n n C6 C7 4T4 sing 26 n y C4 C9 4T4 doub 27 n y C25 C26 4T4 doub 28 n y C25 C24 4T4 sing 29 n y C26 C2 4T4 sing 30 n y C7 N2 4T4 sing 31 n n C7 C8 4T4 doub 32 n y C38 N2 4T4 sing 33 n n C9 C8 4T4 sing 34 n y C20 O1 4T4 sing 35 n n C20 C19 4T4 doub 36 n y C11 C10 4T4 sing 37 n n C11 C12 4T4 sing 38 n n C17 C13 4T4 sing 39 n n C17 C18 4T4 doub 40 n y C13 C24 4T4 sing 41 n n C30 C12 4T4 sing 42 n n N2 C10 4T4 sing 43 n n C24 C23 4T4 doub 44 n y C2 CL1 4T4 sing 45 n n C2 C3 4T4 doub 46 n y C18 C19 4T4 sing 47 n y C19 O2 4T4 sing 48 n n C23 C3 4T4 sing 49 n y O2 C27 4T4 sing 50 n n C27 C29 4T4 sing 51 n n C27 C28 4T4 sing 52 n n C1 H1 4T4 sing 53 n n C1 H2 4T4 sing 54 n n C1 H3 4T4 sing 55 n n C3 H4 4T4 sing 56 n n C5 H5 4T4 sing 57 n n C6 H6 4T4 sing 58 n n C8 H7 4T4 sing 59 n n C9 H8 4T4 sing 60 n n C10 H9 4T4 sing 61 n n C10 H10 4T4 sing 62 n n C11 H11 4T4 sing 63 n n C12 H12 4T4 sing 64 n n C12 H13 4T4 sing 65 n n C13 H14 4T4 sing 66 n n C15 H15 4T4 sing 67 n n C15 H16 4T4 sing 68 n n C18 H17 4T4 sing 69 n n C21 H18 4T4 sing 70 n n C22 H19 4T4 sing 71 n n C22 H20 4T4 sing 72 n n C22 H21 4T4 sing 73 n n C23 H22 4T4 sing 74 n n C25 H23 4T4 sing 75 n n C26 H24 4T4 sing 76 n n C27 H25 4T4 sing 77 n n C28 H26 4T4 sing 78 n n C28 H27 4T4 sing 79 n n C28 H28 4T4 sing 80 n n C29 H29 4T4 sing 81 n n C29 H30 4T4 sing 82 n n C29 H31 4T4 sing 83 n n C30 H32 4T4 sing 84 n n C30 H33 4T4 sing 85 n n C31 H34 4T4 sing 86 n n C32 H35 4T4 sing 87 n n C32 H36 4T4 sing 88 n n C33 H37 4T4 sing 89 n n C33 H38 4T4 sing 90 n n C34 H40 4T4 sing 91 n n C34 H41 4T4 sing 92 n n C35 H42 4T4 sing 93 n n C35 H43 4T4 sing 94 n n C37 H44 4T4 sing 95 n n C37 H45 4T4 sing 96 n n C38 H46 4T4 sing 97 n n C38 H47 4T4 sing 98 n n C38 H48 4T4 sing 99 n n # _atom_sites.entry_id 4ZYF _atom_sites.fract_transf_matrix[1][1] 0.017983 _atom_sites.fract_transf_matrix[1][2] 0.010382 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4T4 A 1 201 1 4T4 LI1 . C 3 CL A 1 202 1 CL CL . D 4 HOH A 1 301 49 HOH HOH . D 4 HOH A 2 302 64 HOH HOH . D 4 HOH A 3 303 9 HOH HOH . D 4 HOH A 4 304 50 HOH HOH . D 4 HOH A 5 305 42 HOH HOH . D 4 HOH A 6 306 55 HOH HOH . D 4 HOH A 7 307 36 HOH HOH . D 4 HOH A 8 308 35 HOH HOH . D 4 HOH A 9 309 62 HOH HOH . D 4 HOH A 10 310 22 HOH HOH . D 4 HOH A 11 311 66 HOH HOH . D 4 HOH A 12 312 10 HOH HOH . D 4 HOH A 13 313 67 HOH HOH . D 4 HOH A 14 314 41 HOH HOH . D 4 HOH A 15 315 54 HOH HOH . D 4 HOH A 16 316 12 HOH HOH . D 4 HOH A 17 317 4 HOH HOH . D 4 HOH A 18 318 20 HOH HOH . D 4 HOH A 19 319 2 HOH HOH . D 4 HOH A 20 320 6 HOH HOH . D 4 HOH A 21 321 51 HOH HOH . D 4 HOH A 22 322 26 HOH HOH . D 4 HOH A 23 323 5 HOH HOH . D 4 HOH A 24 324 53 HOH HOH . D 4 HOH A 25 325 60 HOH HOH . D 4 HOH A 26 326 11 HOH HOH . D 4 HOH A 27 327 23 HOH HOH . D 4 HOH A 28 328 31 HOH HOH . D 4 HOH A 29 329 16 HOH HOH . D 4 HOH A 30 330 46 HOH HOH . D 4 HOH A 31 331 1 HOH HOH . D 4 HOH A 32 332 25 HOH HOH . D 4 HOH A 33 333 21 HOH HOH . D 4 HOH A 34 334 44 HOH HOH . D 4 HOH A 35 335 18 HOH HOH . D 4 HOH A 36 336 8 HOH HOH . D 4 HOH A 37 337 43 HOH HOH . D 4 HOH A 38 338 59 HOH HOH . D 4 HOH A 39 339 3 HOH HOH . D 4 HOH A 40 340 65 HOH HOH . D 4 HOH A 41 341 7 HOH HOH . D 4 HOH A 42 342 29 HOH HOH . D 4 HOH A 43 343 56 HOH HOH . D 4 HOH A 44 344 15 HOH HOH . D 4 HOH A 45 345 61 HOH HOH . D 4 HOH A 46 346 14 HOH HOH . D 4 HOH A 47 347 19 HOH HOH . D 4 HOH A 48 348 13 HOH HOH . D 4 HOH A 49 349 28 HOH HOH . D 4 HOH A 50 350 58 HOH HOH . D 4 HOH A 51 351 48 HOH HOH . D 4 HOH A 52 352 45 HOH HOH . D 4 HOH A 53 353 47 HOH HOH . D 4 HOH A 54 354 38 HOH HOH . D 4 HOH A 55 355 40 HOH HOH . D 4 HOH A 56 356 39 HOH HOH . D 4 HOH A 57 357 24 HOH HOH . D 4 HOH A 58 358 57 HOH HOH . D 4 HOH A 59 359 32 HOH HOH . D 4 HOH A 60 360 52 HOH HOH . D 4 HOH A 61 361 27 HOH HOH . D 4 HOH A 62 362 33 HOH HOH . D 4 HOH A 63 363 37 HOH HOH . D 4 HOH A 64 364 17 HOH HOH . D 4 HOH A 65 365 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4T4 . . . B 2 -21.704 -7.88 -6.002 1 36.69 ? C1 4T4 201 A 1 HETATM 2 C C2 4T4 . . . B 2 -5.211 -14.616 -1.505 1 21.47 ? C2 4T4 201 A 1 HETATM 3 C C3 4T4 . . . B 2 -6.203 -14.209 -0.59 1 20.86 ? C3 4T4 201 A 1 HETATM 4 C C4 4T4 . . . B 2 -9.002 -10.994 -2.712 1 19.52 ? C4 4T4 201 A 1 HETATM 5 C C5 4T4 . . . B 2 -9.318 -12.315 -3.085 1 19.62 ? C5 4T4 201 A 1 HETATM 6 C C6 4T4 . . . B 2 -10.576 -12.801 -2.732 1 19.39 ? C6 4T4 201 A 1 HETATM 7 C C7 4T4 . . . B 2 -11.526 -12.012 -2.049 1 18.04 ? C7 4T4 201 A 1 HETATM 8 C C8 4T4 . . . B 2 -11.187 -10.692 -1.679 1 19.65 ? C8 4T4 201 A 1 HETATM 9 C C9 4T4 . . . B 2 -9.931 -10.196 -2.023 1 20.06 ? C9 4T4 201 A 1 HETATM 10 C C10 4T4 . . . B 2 -13.778 -11.861 -1.025 1 19.85 ? C10 4T4 201 A 1 HETATM 11 C C11 4T4 . . . B 2 -14.73 -11.047 -1.917 1 20.84 ? C11 4T4 201 A 1 HETATM 12 C C12 4T4 . . . B 2 -15.755 -10.312 -0.986 1 23.08 ? C12 4T4 201 A 1 HETATM 13 C C13 4T4 . . . B 2 -6.816 -10.559 -1.848 1 20.59 ? C13 4T4 201 A 1 HETATM 14 C C14 4T4 . . . B 2 -7.381 -9.9 -4.201 1 19.19 ? C14 4T4 201 A 1 HETATM 15 C C15 4T4 . . . B 2 -6.008 -9.33 -4.445 1 20.3 ? C15 4T4 201 A 1 HETATM 16 C C16 4T4 . . . B 2 -5.259 -8.998 -3.136 1 20.6 ? C16 4T4 201 A 1 HETATM 17 C C17 4T4 . . . B 2 -5.638 -9.591 -1.917 1 21.03 ? C17 4T4 201 A 1 HETATM 18 C C18 4T4 . . . B 2 -4.968 -9.308 -0.719 1 21.88 ? C18 4T4 201 A 1 HETATM 19 C C19 4T4 . . . B 2 -3.871 -8.416 -0.716 1 22.66 ? C19 4T4 201 A 1 HETATM 20 C C20 4T4 . . . B 2 -3.473 -7.818 -1.918 1 23.02 ? C20 4T4 201 A 1 HETATM 21 C C21 4T4 . . . B 2 -4.157 -8.102 -3.144 1 21.49 ? C21 4T4 201 A 1 HETATM 22 C C22 4T4 . . . B 2 -1.824 -6.257 -2.922 1 24.51 ? C22 4T4 201 A 1 HETATM 23 CL CL1 4T4 . . . B 2 -4.487 -16.225 -1.477 1 24.02 ? CL1 4T4 201 A 1 HETATM 24 C C23 4T4 . . . B 2 -6.735 -12.89 -0.684 1 22.08 ? C23 4T4 201 A 1 HETATM 25 C C24 4T4 . . . B 2 -6.261 -12.002 -1.694 1 21.96 ? C24 4T4 201 A 1 HETATM 26 C C25 4T4 . . . B 2 -5.272 -12.448 -2.602 1 21.39 ? C25 4T4 201 A 1 HETATM 27 C C26 4T4 . . . B 2 -4.742 -13.748 -2.51 1 21.34 ? C26 4T4 201 A 1 HETATM 28 N N1 4T4 . . . B 2 -7.735 -10.45 -3.009 1 19.74 ? N1 4T4 201 A 1 HETATM 29 O O1 4T4 . . . B 2 -2.384 -6.955 -1.789 1 23.98 ? O1 4T4 201 A 1 HETATM 30 O O2 4T4 . . . B 2 -3.159 -8.096 0.455 1 24.19 ? O2 4T4 201 A 1 HETATM 31 C C27 4T4 . . . B 2 -3.487 -8.675 1.742 1 24.07 ? C27 4T4 201 A 1 HETATM 32 C C28 4T4 . . . B 2 -2.908 -7.723 2.821 1 26.21 ? C28 4T4 201 A 1 HETATM 33 C C29 4T4 . . . B 2 -2.891 -10.091 1.959 1 24.74 ? C29 4T4 201 A 1 HETATM 34 O O3 4T4 . . . B 2 -8.181 -9.849 -5.118 1 19.26 ? O3 4T4 201 A 1 HETATM 35 N N2 4T4 . . . B 2 -12.708 -12.581 -1.727 1 19.79 ? N2 4T4 201 A 1 HETATM 36 C C30 4T4 . . . B 2 -16.805 -9.521 -1.842 1 24.47 ? C30 4T4 201 A 1 HETATM 37 C C31 4T4 . . . B 2 -17.527 -10.41 -2.93 1 26.77 ? C31 4T4 201 A 1 HETATM 38 C C32 4T4 . . . B 2 -16.438 -11.054 -3.847 1 25.22 ? C32 4T4 201 A 1 HETATM 39 C C33 4T4 . . . B 2 -15.479 -11.922 -2.971 1 23.61 ? C33 4T4 201 A 1 HETATM 40 N N3 4T4 . . . B 2 -18.622 -9.697 -3.694 1 30.49 ? N3 4T4 201 A 1 HETATM 41 C C34 4T4 . . . B 2 -19.864 -9.241 -2.98 1 32.63 ? C34 4T4 201 A 1 HETATM 42 C C35 4T4 . . . B 2 -21.034 -9.166 -4.003 1 35.1 ? C35 4T4 201 A 1 HETATM 43 N N4 4T4 . . . B 2 -20.64 -8.399 -5.193 1 35.54 ? N4 4T4 201 A 1 HETATM 44 C C36 4T4 . . . B 2 -19.333 -8.156 -5.551 1 35 ? C36 4T4 201 A 1 HETATM 45 C C37 4T4 . . . B 2 -18.193 -8.693 -4.713 1 33.31 ? C37 4T4 201 A 1 HETATM 46 O O4 4T4 . . . B 2 -18.994 -7.508 -6.542 1 36.42 ? O4 4T4 201 A 1 HETATM 47 C C38 4T4 . . . B 2 -12.938 -14.012 -2.039 1 19.28 ? C38 4T4 201 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #