data_4ZYO # _model_server_result.job_id jigxBV6gUN2e4OJcLDSEKQ _model_server_result.datetime_utc '2024-11-06 15:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4ZYO # _exptl.entry_id 4ZYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1033.996 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STEAROYL-COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYO _cell.length_a 134.108 _cell.length_b 134.108 _cell.length_c 112.561 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 120 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A NE2 HIS 84 A HIS 125 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 A NE2 HIS 116 A HIS 157 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 A NE2 HIS 119 A HIS 160 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 A NE2 HIS 120 A HIS 161 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 A NE2 HIS 228 A HIS 269 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 A NE2 HIS 257 A HIS 298 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 A NE2 HIS 260 A HIS 301 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 A NE2 HIS 261 A HIS 302 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc10 C ZN ZN . A ZN 402 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C39 H70 N7 O17 P3 S' _chem_comp.formula_weight 1033.996 _chem_comp.id ST9 _chem_comp.mon_nstd_flag . _chem_comp.name 'STEAROYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 ST9 sing 372 n n C1 O2 ST9 doub 373 n n C1 S1P ST9 sing 374 n n C3 C2 ST9 sing 375 n n C2 H2 ST9 sing 376 n n C2 H2A ST9 sing 377 n n C4 C3 ST9 sing 378 n n C3 H3 ST9 sing 379 n n C3 H3A ST9 sing 380 n n C5 C4 ST9 sing 381 n n C4 H4 ST9 sing 382 n n C4 H4A ST9 sing 383 n n C6 C5 ST9 sing 384 n n C5 H5 ST9 sing 385 n n C5 H5A ST9 sing 386 n n C6 C7 ST9 sing 387 n n C6 H6 ST9 sing 388 n n C6 H6A ST9 sing 389 n n C7 C8 ST9 sing 390 n n C7 H7 ST9 sing 391 n n C7 H7A ST9 sing 392 n n C8 C9 ST9 sing 393 n n C8 H8 ST9 sing 394 n n C8 H8A ST9 sing 395 n n C9 C10 ST9 sing 396 n n C9 H9 ST9 sing 397 n n C9 H9A ST9 sing 398 n n C10 C11 ST9 sing 399 n n C10 H10 ST9 sing 400 n n C10 H10A ST9 sing 401 n n C11 C12 ST9 sing 402 n n C11 H11 ST9 sing 403 n n C11 H11A ST9 sing 404 n n C13 C12 ST9 sing 405 n n C12 H12 ST9 sing 406 n n C12 H12A ST9 sing 407 n n C13 C14 ST9 sing 408 n n C13 H13 ST9 sing 409 n n C13 H13A ST9 sing 410 n n C14 C15 ST9 sing 411 n n C14 H14 ST9 sing 412 n n C14 H14A ST9 sing 413 n n C15 C16 ST9 sing 414 n n C15 H15 ST9 sing 415 n n C15 H15A ST9 sing 416 n n C16 C17 ST9 sing 417 n n C16 H16 ST9 sing 418 n n C16 H16A ST9 sing 419 n n C18 C17 ST9 sing 420 n n C17 H17 ST9 sing 421 n n C17 H17A ST9 sing 422 n n C18 H18 ST9 sing 423 n n C18 H18A ST9 sing 424 n n C18 H18B ST9 sing 425 n n C6A N1A ST9 doub 426 n y N1A C2A ST9 sing 427 n y O1A P1A ST9 doub 428 n n O3A P1A ST9 sing 429 n n P1A O2A ST9 sing 430 n n P1A O5B ST9 sing 431 n n N9A C1B ST9 sing 432 n n C2B C1B ST9 sing 433 n n O4B C1B ST9 sing 434 n n C1B H1B ST9 sing 435 n n S1P C2P ST9 sing 436 n n C2A N3A ST9 doub 437 n y C2A H2AA ST9 sing 438 n n O2A HO2A ST9 sing 439 n n O5A P2A ST9 doub 440 n n P2A O4A ST9 sing 441 n n P2A O6A ST9 sing 442 n n P2A O3A ST9 sing 443 n n C2B O2B ST9 sing 444 n n C2B C3B ST9 sing 445 n n C2B H2B ST9 sing 446 n n O2B HO2B ST9 sing 447 n n C2P C3P ST9 sing 448 n n C2P H2P ST9 sing 449 n n C2P H2PA ST9 sing 450 n n C4A N3A ST9 sing 451 n y C4B C3B ST9 sing 452 n n C3B O3B ST9 sing 453 n n C3B H3B ST9 sing 454 n n O3B P3B ST9 sing 455 n n O9A P3B ST9 doub 456 n n O7A P3B ST9 sing 457 n n P3B O8A ST9 sing 458 n n C3P N4P ST9 sing 459 n n C3P H3P ST9 sing 460 n n C3P H3PA ST9 sing 461 n n C5A C4A ST9 doub 462 n y N9A C4A ST9 sing 463 n y O4A HO4A ST9 sing 464 n n C5B C4B ST9 sing 465 n n O4B C4B ST9 sing 466 n n C4B H4B ST9 sing 467 n n C5P N4P ST9 sing 468 n n N4P HN4P ST9 sing 469 n n N7A C5A ST9 sing 470 n y C6A C5A ST9 sing 471 n y O5B C5B ST9 sing 472 n n C5B H5B ST9 sing 473 n n C5B H5BA ST9 sing 474 n n O5P C5P ST9 doub 475 n n C5P C6P ST9 sing 476 n n N6A C6A ST9 sing 477 n n N6A HN6A ST9 sing 478 n n N6A HN6B ST9 sing 479 n n O6A CCP ST9 sing 480 n n C7P C6P ST9 sing 481 n n C6P H6P ST9 sing 482 n n C6P H6PA ST9 sing 483 n n N7A C8A ST9 doub 484 n y O7A HO7A ST9 sing 485 n n C7P N8P ST9 sing 486 n n C7P H7P ST9 sing 487 n n C7P H7PA ST9 sing 488 n n C8A N9A ST9 sing 489 n y C8A H8AA ST9 sing 490 n n O8A HO8A ST9 sing 491 n n N8P C9P ST9 sing 492 n n N8P HN8P ST9 sing 493 n n CAP C9P ST9 sing 494 n n C9P O9P ST9 doub 495 n n OAP CAP ST9 sing 496 n n CAP CBP ST9 sing 497 n n CAP HAP ST9 sing 498 n n OAP HOAP ST9 sing 499 n n CDP CBP ST9 sing 500 n n CBP CCP ST9 sing 501 n n CBP CEP ST9 sing 502 n n CCP HCP ST9 sing 503 n n CCP HCPA ST9 sing 504 n n CDP HDP ST9 sing 505 n n CDP HDPA ST9 sing 506 n n CDP HDPB ST9 sing 507 n n CEP HEP ST9 sing 508 n n CEP HEPA ST9 sing 509 n n CEP HEPB ST9 sing 510 n n # _atom_sites.entry_id 4ZYO _atom_sites.fract_transf_matrix[1][1] 0.007457 _atom_sites.fract_transf_matrix[1][2] 0.004305 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 2 ZN A 1 402 2 ZN ZN . D 3 ST9 A 1 403 1 ST9 ST9 . E 4 LMT A 1 404 1 LMT LMT . F 5 HOH A 1 501 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ST9 . . . D 3 21.288 68.71 45.568 1 97.63 ? C1 ST9 403 A 1 HETATM 2 C C2 ST9 . . . D 3 20.021 68.791 44.698 1 99.68 ? C2 ST9 403 A 1 HETATM 3 O O2 ST9 . . . D 3 22.306 69.249 45.166 1 97.09 ? O2 ST9 403 A 1 HETATM 4 C C3 ST9 . . . D 3 20.187 69.941 43.69 1 91.54 ? C3 ST9 403 A 1 HETATM 5 C C4 ST9 . . . D 3 19.784 69.474 42.261 1 92.03 ? C4 ST9 403 A 1 HETATM 6 C C5 ST9 . . . D 3 18.54 70.249 41.816 1 90.33 ? C5 ST9 403 A 1 HETATM 7 C C6 ST9 . . . D 3 18.572 70.455 40.318 1 91.73 ? C6 ST9 403 A 1 HETATM 8 C C7 ST9 . . . D 3 17.587 71.553 39.958 1 100.16 ? C7 ST9 403 A 1 HETATM 9 C C8 ST9 . . . D 3 16.617 71.053 38.877 1 101.2 ? C8 ST9 403 A 1 HETATM 10 C C9 ST9 . . . D 3 17.147 71.46 37.492 1 87.33 ? C9 ST9 403 A 1 HETATM 11 C C10 ST9 . . . D 3 16.243 70.828 36.395 1 90.3 ? C10 ST9 403 A 1 HETATM 12 C C11 ST9 . . . D 3 17.026 69.701 35.599 1 94.13 ? C11 ST9 403 A 1 HETATM 13 C C12 ST9 . . . D 3 17.667 68.625 36.576 1 80.94 ? C12 ST9 403 A 1 HETATM 14 C C13 ST9 . . . D 3 18.762 67.835 35.775 1 85.48 ? C13 ST9 403 A 1 HETATM 15 C C14 ST9 . . . D 3 19.505 66.793 36.635 1 90.19 ? C14 ST9 403 A 1 HETATM 16 C C15 ST9 . . . D 3 20.659 66.275 35.747 1 87.79 ? C15 ST9 403 A 1 HETATM 17 C C16 ST9 . . . D 3 20.988 64.819 36.124 1 93.14 ? C16 ST9 403 A 1 HETATM 18 C C17 ST9 . . . D 3 22.176 64.316 35.272 1 98.13 ? C17 ST9 403 A 1 HETATM 19 C C18 ST9 . . . D 3 23.275 63.792 36.238 1 87.29 ? C18 ST9 403 A 1 HETATM 20 N N1A ST9 . . . D 3 8.816 74.752 49.433 1 108.13 ? N1A ST9 403 A 1 HETATM 21 O O1A ST9 . . . D 3 15.448 73.358 53.483 1 112.76 ? O1A ST9 403 A 1 HETATM 22 P P1A ST9 . . . D 3 15.168 73.174 54.961 1 113.8 ? P1A ST9 403 A 1 HETATM 23 C C1B ST9 . . . D 3 9.724 74.02 54.172 1 110.79 ? C1B ST9 403 A 1 HETATM 24 S S1P ST9 . . . D 3 21.283 67.829 47.117 1 91.38 ? S1P ST9 403 A 1 HETATM 25 C C2A ST9 . . . D 3 7.992 74.585 50.508 1 109.48 ? C2A ST9 403 A 1 HETATM 26 O O2A ST9 . . . D 3 16.029 72.057 55.487 1 97.29 ? O2A ST9 403 A 1 HETATM 27 P P2A ST9 . . . D 3 16.74 75.509 55.488 1 99.1 ? P2A ST9 403 A 1 HETATM 28 C C2B ST9 . . . D 3 9.641 72.767 54.457 1 106.55 ? C2B ST9 403 A 1 HETATM 29 O O2B ST9 . . . D 3 8.4 72.472 55.092 1 101.78 ? O2B ST9 403 A 1 HETATM 30 C C2P ST9 . . . D 3 22.833 66.942 47.387 1 95.47 ? C2P ST9 403 A 1 HETATM 31 N N3A ST9 . . . D 3 8.519 74.395 51.76 1 103.96 ? N3A ST9 403 A 1 HETATM 32 O O3A ST9 . . . D 3 15.496 74.527 55.778 1 91.22 ? O3A ST9 403 A 1 HETATM 33 C C3B ST9 . . . D 3 11.006 72.439 55.445 1 100.98 ? C3B ST9 403 A 1 HETATM 34 O O3B ST9 . . . D 3 10.804 71.334 56.412 1 111.92 ? O3B ST9 403 A 1 HETATM 35 P P3B ST9 . . . D 3 11.034 69.846 55.951 1 131.41 ? P3B ST9 403 A 1 HETATM 36 C C3P ST9 . . . D 3 23.073 66.782 48.917 1 90.37 ? C3P ST9 403 A 1 HETATM 37 C C4A ST9 . . . D 3 9.859 74.374 51.928 1 99.62 ? C4A ST9 403 A 1 HETATM 38 O O4A ST9 . . . D 3 17.547 75.622 56.779 1 115.19 ? O4A ST9 403 A 1 HETATM 39 C C4B ST9 . . . D 3 11.269 73.473 56.056 1 101.8 ? C4B ST9 403 A 1 HETATM 40 O O4B ST9 . . . D 3 10.338 74.648 55.405 1 105.81 ? O4B ST9 403 A 1 HETATM 41 N N4P ST9 . . . D 3 23.255 68.066 49.539 1 88.66 ? N4P ST9 403 A 1 HETATM 42 C C5A ST9 . . . D 3 10.682 74.542 50.864 1 110.8 ? C5A ST9 403 A 1 HETATM 43 O O5A ST9 . . . D 3 16.241 76.9 55.091 1 98.77 ? O5A ST9 403 A 1 HETATM 44 C C5B ST9 . . . D 3 12.77 73.871 55.899 1 100.94 ? C5B ST9 403 A 1 HETATM 45 O O5B ST9 . . . D 3 13.567 72.847 55.182 1 107.15 ? O5B ST9 403 A 1 HETATM 46 C C5P ST9 . . . D 3 22.332 68.459 50.589 1 87.41 ? C5P ST9 403 A 1 HETATM 47 O O5P ST9 . . . D 3 21.434 67.699 50.92 1 91.21 ? O5P ST9 403 A 1 HETATM 48 C C6A ST9 . . . D 3 10.149 74.735 49.599 1 111.79 ? C6A ST9 403 A 1 HETATM 49 N N6A ST9 . . . D 3 10.772 74.939 48.31 1 97.53 ? N6A ST9 403 A 1 HETATM 50 O O6A ST9 . . . D 3 17.659 74.914 54.286 1 103.27 ? O6A ST9 403 A 1 HETATM 51 C C6P ST9 . . . D 3 22.466 69.826 51.282 1 93.92 ? C6P ST9 403 A 1 HETATM 52 N N7A ST9 . . . D 3 11.976 74.481 51.309 1 107.75 ? N7A ST9 403 A 1 HETATM 53 O O7A ST9 . . . D 3 12.286 69.261 56.512 1 114.51 ? O7A ST9 403 A 1 HETATM 54 C C7P ST9 . . . D 3 21.514 69.83 52.513 1 92.12 ? C7P ST9 403 A 1 HETATM 55 C C8A ST9 . . . D 3 11.945 74.275 52.643 1 105.43 ? C8A ST9 403 A 1 HETATM 56 O O8A ST9 . . . D 3 9.838 69.031 56.429 1 115.09 ? O8A ST9 403 A 1 HETATM 57 N N8P ST9 . . . D 3 20.49 70.928 52.409 1 95.95 ? N8P ST9 403 A 1 HETATM 58 N N9A ST9 . . . D 3 10.638 74.211 53.026 1 107.75 ? N9A ST9 403 A 1 HETATM 59 O O9A ST9 . . . D 3 11.099 69.805 54.433 1 126.56 ? O9A ST9 403 A 1 HETATM 60 C C9P ST9 . . . D 3 20.281 71.845 53.592 1 93.56 ? C9P ST9 403 A 1 HETATM 61 O O9P ST9 . . . D 3 20.939 71.653 54.613 1 99.31 ? O9P ST9 403 A 1 HETATM 62 C CAP ST9 . . . D 3 19.232 72.998 53.525 1 88.4 ? CAP ST9 403 A 1 HETATM 63 O OAP ST9 . . . D 3 18.331 72.709 52.498 1 99.68 ? OAP ST9 403 A 1 HETATM 64 C CBP ST9 . . . D 3 19.84 74.39 53.304 1 95.53 ? CBP ST9 403 A 1 HETATM 65 C CCP ST9 . . . D 3 19.015 75.413 54.173 1 105.69 ? CCP ST9 403 A 1 HETATM 66 C CDP ST9 . . . D 3 19.73 74.787 51.801 1 97.1 ? CDP ST9 403 A 1 HETATM 67 C CEP ST9 . . . D 3 21.361 74.475 53.719 1 98.84 ? CEP ST9 403 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 67 #