data_4ZYO # _model_server_result.job_id C9rsCQM07cJVdX9qWwCvxA _model_server_result.datetime_utc '2024-11-24 12:08:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4ZYO # _exptl.entry_id 4ZYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYO _cell.length_a 134.108 _cell.length_b 134.108 _cell.length_c 112.561 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 120 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A NE2 HIS 84 A HIS 125 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 A NE2 HIS 116 A HIS 157 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 A NE2 HIS 119 A HIS 160 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 A NE2 HIS 120 A HIS 161 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 A NE2 HIS 228 A HIS 269 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 A NE2 HIS 257 A HIS 298 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 A NE2 HIS 260 A HIS 301 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 A NE2 HIS 261 A HIS 302 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc10 C ZN ZN . A ZN 402 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 4ZYO _atom_sites.fract_transf_matrix[1][1] 0.007457 _atom_sites.fract_transf_matrix[1][2] 0.004305 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 2 ZN A 1 402 2 ZN ZN . D 3 ST9 A 1 403 1 ST9 ST9 . E 4 LMT A 1 404 1 LMT LMT . F 5 HOH A 1 501 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . E 4 10.565 90.038 50.054 1 110.6 ? C1B LMT 404 A 1 HETATM 2 C C2B LMT . . . E 4 10.733 89.238 51.372 1 112.82 ? C2B LMT 404 A 1 HETATM 3 C C3B LMT . . . E 4 9.884 87.94 51.358 1 108.69 ? C3B LMT 404 A 1 HETATM 4 C C4B LMT . . . E 4 8.571 88.193 50.579 1 110.01 ? C4B LMT 404 A 1 HETATM 5 C C5B LMT . . . E 4 8.948 88.561 49.124 1 111.08 ? C5B LMT 404 A 1 HETATM 6 C C6B LMT . . . E 4 7.841 89.413 48.507 1 122.58 ? C6B LMT 404 A 1 HETATM 7 O O1B LMT . . . E 4 11.773 90.684 49.775 1 115.13 ? O1B LMT 404 A 1 HETATM 8 O O2B LMT . . . E 4 12.073 88.96 51.49 1 118.85 ? O2B LMT 404 A 1 HETATM 9 O O3B LMT . . . E 4 9.666 87.432 52.62 1 90.06 ? O3B LMT 404 A 1 HETATM 10 O O4' LMT . . . E 4 7.756 87.076 50.587 1 113.74 ? O4' LMT 404 A 1 HETATM 11 O O5B LMT . . . E 4 10.204 89.203 48.992 1 111.45 ? O5B LMT 404 A 1 HETATM 12 O O6B LMT . . . E 4 8.33 90.143 47.448 1 128.35 ? O6B LMT 404 A 1 HETATM 13 C C1' LMT . . . E 4 13.602 94.235 50.74 1 116.28 ? C1' LMT 404 A 1 HETATM 14 C C2' LMT . . . E 4 12.247 94.055 51.464 1 116.35 ? C2' LMT 404 A 1 HETATM 15 C C3' LMT . . . E 4 11.715 92.597 51.277 1 109.25 ? C3' LMT 404 A 1 HETATM 16 C C4' LMT . . . E 4 11.845 92.103 49.814 1 108.75 ? C4' LMT 404 A 1 HETATM 17 C C5' LMT . . . E 4 13.283 92.476 49.362 1 113.21 ? C5' LMT 404 A 1 HETATM 18 C C6' LMT . . . E 4 13.699 91.934 48.007 1 109.21 ? C6' LMT 404 A 1 HETATM 19 O O1' LMT . . . E 4 14.007 95.54 50.755 1 109.83 ? O1' LMT 404 A 1 HETATM 20 O O2' LMT . . . E 4 12.429 94.317 52.807 1 125.03 ? O2' LMT 404 A 1 HETATM 21 O O3' LMT . . . E 4 10.415 92.49 51.701 1 109.66 ? O3' LMT 404 A 1 HETATM 22 O O5' LMT . . . E 4 13.445 93.863 49.386 1 114.2 ? O5' LMT 404 A 1 HETATM 23 O O6' LMT . . . E 4 13.052 90.728 47.858 1 111.94 ? O6' LMT 404 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #