data_4ZYR
#
_model_server_result.job_id            vJ_iEPNfaKVudYNPtRyI-A 
_model_server_result.datetime_utc      '2025-01-21 20:09:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zyr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    4ZYR 
#
_exptl.entry_id    4ZYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.249 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-nitrophenyl alpha-D-galactopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZYR 
_cell.length_a            103.15 
_cell.length_b            121.99 
_cell.length_c            266.09 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C12 H15 N O8' 
_chem_comp.formula_weight    301.249 
_chem_comp.id                9PG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '4-nitrophenyl alpha-D-galactopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '4-nitrophenyl alpha-D-galactoside;4-nitrophenyl D-galactoside;4-nitrophenyl galactoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C3 9PG sing 1 n n 
O2 C2 9PG sing 2 n n 
C3 C2 9PG sing 3 n n 
C3 C4 9PG sing 4 n n 
C2 C1 9PG sing 5 n n 
C4 O4 9PG sing 6 n n 
C4 C5 9PG sing 7 n n 
O1 C1 9PG sing 8 n n 
O1 C12 9PG sing 9 n n 
C1 O5 9PG sing 10 n n 
C11 C12 9PG doub 11 n y 
C11 C10 9PG sing 12 n y 
C5 O5 9PG sing 13 n n 
C5 C6 9PG sing 14 n n 
C12 C13 9PG sing 15 n y 
C10 C9 9PG doub 16 n y 
C13 C14 9PG doub 17 n y 
O6 C6 9PG sing 18 n n 
C9 C14 9PG sing 19 n y 
C9 N 9PG sing 20 n n 
N O7 9PG doub 21 n n 
N O8 9PG sing 22 n n 
C6 H61 9PG sing 23 n n 
C6 H62 9PG sing 24 n n 
C5 H5 9PG sing 25 n n 
C4 H4 9PG sing 26 n n 
C3 H3 9PG sing 27 n n 
C2 H2 9PG sing 28 n n 
C1 H1 9PG sing 29 n n 
C14 H8 9PG sing 30 n n 
C13 H9 9PG sing 31 n n 
C11 H10 9PG sing 32 n n 
C10 H11 9PG sing 33 n n 
O2 HO2 9PG sing 34 n n 
O3 HO3 9PG sing 35 n n 
O4 HO4 9PG sing 36 n n 
O6 HO6 9PG sing 37 n n 
#
_atom_sites.entry_id                     4ZYR 
_atom_sites.fract_transf_matrix[1][1]    0.009695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 9PG A 1 501 1 9PG NPG . 
D 3 BNG A 1 502 1 BNG BNG . 
E 2 9PG B 1 501 1 9PG NPG . 
F 3 BNG B 1 502 1 BNG BNG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C6 9PG . . . E 2 5.601 -37.584 17.241 1 106.39 ? C6 9PG 501 B 1 
HETATM 2 C C5 9PG . . . E 2 6.248 -38.366 16.102 1 107.36 ? C5 9PG 501 B 1 
HETATM 3 C C4 9PG . . . E 2 5.581 -38.02 14.767 1 116.38 ? C4 9PG 501 B 1 
HETATM 4 C C3 9PG . . . E 2 6.229 -38.833 13.648 1 124.6 ? C3 9PG 501 B 1 
HETATM 5 C C2 9PG . . . E 2 6.193 -40.307 14.019 1 123.63 ? C2 9PG 501 B 1 
HETATM 6 C C1 9PG . . . E 2 6.818 -40.498 15.392 1 112.87 ? C1 9PG 501 B 1 
HETATM 7 O O8 9PG . . . E 2 12.4 -42.939 18.92 1 183.67 ? O8 9PG 501 B 1 
HETATM 8 N N 9PG . . . E 2 11.348 -43.33 18.572 1 169.88 ? N 9PG 501 B 1 
HETATM 9 O O7 9PG . . . E 2 10.982 -44.404 18.879 1 210.13 ? O7 9PG 501 B 1 
HETATM 10 C C9 9PG . . . E 2 10.503 -42.487 17.754 1 140.47 ? C9 9PG 501 B 1 
HETATM 11 C C14 9PG . . . E 2 9.124 -42.544 17.872 1 122.34 ? C14 9PG 501 B 1 
HETATM 12 C C13 9PG . . . E 2 8.333 -41.73 17.079 1 121.37 ? C13 9PG 501 B 1 
HETATM 13 C C12 9PG . . . E 2 8.923 -40.863 16.172 1 114.01 ? C12 9PG 501 B 1 
HETATM 14 C C11 9PG . . . E 2 10.3 -40.811 16.058 1 123.85 ? C11 9PG 501 B 1 
HETATM 15 C C10 9PG . . . E 2 11.09 -41.623 16.85 1 134.88 ? C10 9PG 501 B 1 
HETATM 16 O O1 9PG . . . E 2 8.136 -40.038 15.366 1 100.64 ? O1 9PG 501 B 1 
HETATM 17 O O2 9PG . . . E 2 6.901 -41.041 13.053 1 131.66 ? O2 9PG 501 B 1 
HETATM 18 O O3 9PG . . . E 2 5.508 -38.661 12.46 1 143.54 ? O3 9PG 501 B 1 
HETATM 19 O O4 9PG . . . E 2 4.224 -38.341 14.82 1 132.3 ? O4 9PG 501 B 1 
HETATM 20 O O5 9PG . . . E 2 6.113 -39.74 16.328 1 115.07 ? O5 9PG 501 B 1 
HETATM 21 O O6 9PG . . . E 2 4.204 -37.632 17.138 1 98.7 ? O6 9PG 501 B 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           504 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#