data_4ZYU # _model_server_result.job_id 7RCCO5LcgzpipdGkiR8QfQ _model_server_result.datetime_utc '2024-11-21 17:35:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 4ZYU # _exptl.entry_id 4ZYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.514 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{4-[4-(2-amino-4-oxo-1,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]benzoyl}-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYU _cell.length_a 75.202 _cell.length_b 75.202 _cell.length_c 100.971 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H24 N4 O6 S' _chem_comp.formula_weight 472.514 _chem_comp.id 3YA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{4-[4-(2-amino-4-oxo-1,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]benzoyl}-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C17 3YA doub 1 n n O28 C26 3YA doub 2 n n O25 C23 3YA doub 3 n n O24 C23 3YA sing 4 n n C17 C12 3YA sing 5 n n C17 N19 3YA sing 6 n n C23 C22 3YA sing 7 n n C26 C20 3YA sing 8 n n C26 O27 3YA sing 9 n n C20 N19 3YA sing 10 n n C20 C21 3YA sing 11 n n C12 C14 3YA doub 12 n y C12 C13 3YA sing 13 n y C14 C16 3YA sing 14 n y C13 C15 3YA doub 15 n y C16 C33 3YA doub 16 n y C21 C22 3YA sing 17 n n C15 C33 3YA sing 18 n y C33 C32 3YA sing 19 n n C32 C31 3YA sing 20 n n C31 C30 3YA sing 21 n n C30 C29 3YA sing 22 n n C29 C6 3YA sing 23 n n C6 S5 3YA sing 24 n y C6 C7 3YA doub 25 n y S5 C9 3YA sing 26 n y C7 C8 3YA sing 27 n y C8 C9 3YA doub 28 n y C8 C4 3YA sing 29 n n C9 N1 3YA sing 30 n n N1 C2 3YA sing 31 n n C4 O10 3YA doub 32 n n C4 N3 3YA sing 33 n n C2 N3 3YA doub 34 n n C2 N11 3YA sing 35 n n C13 H1 3YA sing 36 n n C14 H2 3YA sing 37 n n C16 H3 3YA sing 38 n n C7 H5 3YA sing 39 n n N11 H6 3YA sing 40 n n N11 H7 3YA sing 41 n n N19 H8 3YA sing 42 n n C20 H9 3YA sing 43 n n C21 H10 3YA sing 44 n n C21 H11 3YA sing 45 n n C22 H12 3YA sing 46 n n C22 H13 3YA sing 47 n n O24 H14 3YA sing 48 n n O27 H15 3YA sing 49 n n C29 H16 3YA sing 50 n n C29 H17 3YA sing 51 n n C30 H18 3YA sing 52 n n C30 H19 3YA sing 53 n n C31 H20 3YA sing 54 n n C31 H21 3YA sing 55 n n C32 H22 3YA sing 56 n n C32 H23 3YA sing 57 n n C15 H24 3YA sing 58 n n N1 H25 3YA sing 59 n n # _atom_sites.entry_id 4ZYU _atom_sites.fract_transf_matrix[1][1] 0.013298 _atom_sites.fract_transf_matrix[1][2] 0.007677 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1016 GAR GAR . C 3 3YA A 1 1102 1017 3YA 2GD . D 4 HOH A 1 1201 72 HOH HOH . D 4 HOH A 2 1202 82 HOH HOH . D 4 HOH A 3 1203 71 HOH HOH . D 4 HOH A 4 1204 123 HOH HOH . D 4 HOH A 5 1205 41 HOH HOH . D 4 HOH A 6 1206 69 HOH HOH . D 4 HOH A 7 1207 61 HOH HOH . D 4 HOH A 8 1208 67 HOH HOH . D 4 HOH A 9 1209 18 HOH HOH . D 4 HOH A 10 1210 4 HOH HOH . D 4 HOH A 11 1211 68 HOH HOH . D 4 HOH A 12 1212 8 HOH HOH . D 4 HOH A 13 1213 108 HOH HOH . D 4 HOH A 14 1214 20 HOH HOH . D 4 HOH A 15 1215 21 HOH HOH . D 4 HOH A 16 1216 6 HOH HOH . D 4 HOH A 17 1217 98 HOH HOH . D 4 HOH A 18 1218 3 HOH HOH . D 4 HOH A 19 1219 104 HOH HOH . D 4 HOH A 20 1220 13 HOH HOH . D 4 HOH A 21 1221 17 HOH HOH . D 4 HOH A 22 1222 77 HOH HOH . D 4 HOH A 23 1223 62 HOH HOH . D 4 HOH A 24 1224 44 HOH HOH . D 4 HOH A 25 1225 70 HOH HOH . D 4 HOH A 26 1226 43 HOH HOH . D 4 HOH A 27 1227 111 HOH HOH . D 4 HOH A 28 1228 84 HOH HOH . D 4 HOH A 29 1229 74 HOH HOH . D 4 HOH A 30 1230 25 HOH HOH . D 4 HOH A 31 1231 116 HOH HOH . D 4 HOH A 32 1232 33 HOH HOH . D 4 HOH A 33 1233 11 HOH HOH . D 4 HOH A 34 1234 31 HOH HOH . D 4 HOH A 35 1235 10 HOH HOH . D 4 HOH A 36 1236 24 HOH HOH . D 4 HOH A 37 1237 23 HOH HOH . D 4 HOH A 38 1238 76 HOH HOH . D 4 HOH A 39 1239 119 HOH HOH . D 4 HOH A 40 1240 32 HOH HOH . D 4 HOH A 41 1241 63 HOH HOH . D 4 HOH A 42 1242 85 HOH HOH . D 4 HOH A 43 1243 45 HOH HOH . D 4 HOH A 44 1244 50 HOH HOH . D 4 HOH A 45 1245 35 HOH HOH . D 4 HOH A 46 1246 52 HOH HOH . D 4 HOH A 47 1247 29 HOH HOH . D 4 HOH A 48 1248 78 HOH HOH . D 4 HOH A 49 1249 47 HOH HOH . D 4 HOH A 50 1250 5 HOH HOH . D 4 HOH A 51 1251 22 HOH HOH . D 4 HOH A 52 1252 64 HOH HOH . D 4 HOH A 53 1253 100 HOH HOH . D 4 HOH A 54 1254 2 HOH HOH . D 4 HOH A 55 1255 9 HOH HOH . D 4 HOH A 56 1256 28 HOH HOH . D 4 HOH A 57 1257 19 HOH HOH . D 4 HOH A 58 1258 103 HOH HOH . D 4 HOH A 59 1259 60 HOH HOH . D 4 HOH A 60 1260 73 HOH HOH . D 4 HOH A 61 1261 37 HOH HOH . D 4 HOH A 62 1262 107 HOH HOH . D 4 HOH A 63 1263 59 HOH HOH . D 4 HOH A 64 1264 49 HOH HOH . D 4 HOH A 65 1265 27 HOH HOH . D 4 HOH A 66 1266 66 HOH HOH . D 4 HOH A 67 1267 101 HOH HOH . D 4 HOH A 68 1268 38 HOH HOH . D 4 HOH A 69 1269 15 HOH HOH . D 4 HOH A 70 1270 16 HOH HOH . D 4 HOH A 71 1271 109 HOH HOH . D 4 HOH A 72 1272 26 HOH HOH . D 4 HOH A 73 1273 89 HOH HOH . D 4 HOH A 74 1274 30 HOH HOH . D 4 HOH A 75 1275 1 HOH HOH . D 4 HOH A 76 1276 54 HOH HOH . D 4 HOH A 77 1277 42 HOH HOH . D 4 HOH A 78 1278 39 HOH HOH . D 4 HOH A 79 1279 7 HOH HOH . D 4 HOH A 80 1280 83 HOH HOH . D 4 HOH A 81 1281 99 HOH HOH . D 4 HOH A 82 1282 115 HOH HOH . D 4 HOH A 83 1283 12 HOH HOH . D 4 HOH A 84 1284 65 HOH HOH . D 4 HOH A 85 1285 120 HOH HOH . D 4 HOH A 86 1286 114 HOH HOH . D 4 HOH A 87 1287 91 HOH HOH . D 4 HOH A 88 1288 96 HOH HOH . D 4 HOH A 89 1289 122 HOH HOH . D 4 HOH A 90 1290 81 HOH HOH . D 4 HOH A 91 1291 93 HOH HOH . D 4 HOH A 92 1292 75 HOH HOH . D 4 HOH A 93 1293 118 HOH HOH . D 4 HOH A 94 1294 55 HOH HOH . D 4 HOH A 95 1295 102 HOH HOH . D 4 HOH A 96 1296 14 HOH HOH . D 4 HOH A 97 1297 86 HOH HOH . D 4 HOH A 98 1298 97 HOH HOH . D 4 HOH A 99 1299 92 HOH HOH . D 4 HOH A 100 1300 112 HOH HOH . D 4 HOH A 101 1301 121 HOH HOH . D 4 HOH A 102 1302 51 HOH HOH . D 4 HOH A 103 1303 56 HOH HOH . D 4 HOH A 104 1304 95 HOH HOH . D 4 HOH A 105 1305 46 HOH HOH . D 4 HOH A 106 1306 90 HOH HOH . D 4 HOH A 107 1307 57 HOH HOH . D 4 HOH A 108 1308 88 HOH HOH . D 4 HOH A 109 1309 34 HOH HOH . D 4 HOH A 110 1310 40 HOH HOH . D 4 HOH A 111 1311 79 HOH HOH . D 4 HOH A 112 1312 53 HOH HOH . D 4 HOH A 113 1313 36 HOH HOH . D 4 HOH A 114 1314 105 HOH HOH . D 4 HOH A 115 1315 58 HOH HOH . D 4 HOH A 116 1316 94 HOH HOH . D 4 HOH A 117 1317 106 HOH HOH . D 4 HOH A 118 1318 113 HOH HOH . D 4 HOH A 119 1319 80 HOH HOH . D 4 HOH A 120 1320 110 HOH HOH . D 4 HOH A 121 1321 48 HOH HOH . D 4 HOH A 122 1322 87 HOH HOH . D 4 HOH A 123 1323 124 HOH HOH . D 4 HOH A 124 1324 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 3YA . . . C 3 21.878 -16.003 -34.406 1 59.32 ? C13 3YA 1102 A 1 HETATM 2 C C14 3YA . . . C 3 23.254 -17.956 -34.778 1 59.55 ? C14 3YA 1102 A 1 HETATM 3 C C16 3YA . . . C 3 24.34 -17.288 -34.236 1 55.96 ? C16 3YA 1102 A 1 HETATM 4 N N1 3YA . . . C 3 22.304 -17.139 -27.028 1 27.54 ? N1 3YA 1102 A 1 HETATM 5 C C2 3YA . . . C 3 21.897 -16.122 -26.258 1 28.53 ? C2 3YA 1102 A 1 HETATM 6 N N3 3YA . . . C 3 22.575 -14.966 -26.194 1 30.65 ? N3 3YA 1102 A 1 HETATM 7 C C4 3YA . . . C 3 23.699 -14.746 -26.897 1 27.78 ? C4 3YA 1102 A 1 HETATM 8 S S5 3YA . . . C 3 24.163 -18.007 -28.762 1 30.15 ? S5 3YA 1102 A 1 HETATM 9 C C6 3YA . . . C 3 25.433 -16.974 -29.207 1 29.85 ? C6 3YA 1102 A 1 HETATM 10 C C7 3YA . . . C 3 25.31 -15.766 -28.536 1 28.84 ? C7 3YA 1102 A 1 HETATM 11 C C8 3YA . . . C 3 24.189 -15.747 -27.722 1 27.79 ? C8 3YA 1102 A 1 HETATM 12 C C9 3YA . . . C 3 23.422 -16.904 -27.721 1 23.81 ? C9 3YA 1102 A 1 HETATM 13 O O10 3YA . . . C 3 24.269 -13.665 -26.786 1 29.32 ? O10 3YA 1102 A 1 HETATM 14 N N11 3YA . . . C 3 20.724 -16.258 -25.477 1 31.46 ? N11 3YA 1102 A 1 HETATM 15 C C12 3YA . . . C 3 22.027 -17.308 -34.866 1 64.88 ? C12 3YA 1102 A 1 HETATM 16 C C17 3YA . . . C 3 20.823 -18.057 -35.456 1 75.62 ? C17 3YA 1102 A 1 HETATM 17 O O18 3YA . . . C 3 20.765 -18.322 -36.643 1 78.24 ? O18 3YA 1102 A 1 HETATM 18 N N19 3YA . . . C 3 19.785 -18.435 -34.563 1 82.42 ? N19 3YA 1102 A 1 HETATM 19 C C20 3YA . . . C 3 18.637 -19.145 -35.003 1 87.07 ? C20 3YA 1102 A 1 HETATM 20 C C21 3YA . . . C 3 18.399 -20.287 -34.037 1 84.65 ? C21 3YA 1102 A 1 HETATM 21 C C22 3YA . . . C 3 19.642 -21.149 -34.02 1 82.01 ? C22 3YA 1102 A 1 HETATM 22 C C23 3YA . . . C 3 19.968 -21.546 -35.446 1 80.19 ? C23 3YA 1102 A 1 HETATM 23 O O24 3YA . . . C 3 21.029 -21.152 -35.999 1 78.59 ? O24 3YA 1102 A 1 HETATM 24 O O25 3YA . . . C 3 19.168 -22.273 -36.089 1 80.49 ? O25 3YA 1102 A 1 HETATM 25 C C26 3YA . . . C 3 17.418 -18.248 -35.116 1 92.09 ? C26 3YA 1102 A 1 HETATM 26 O O27 3YA . . . C 3 17.038 -17.558 -34.13 1 93.53 ? O27 3YA 1102 A 1 HETATM 27 O O28 3YA . . . C 3 16.779 -18.193 -36.203 1 93.43 ? O28 3YA 1102 A 1 HETATM 28 C C29 3YA . . . C 3 26.524 -17.352 -30.177 1 32.41 ? C29 3YA 1102 A 1 HETATM 29 C C30 3YA . . . C 3 26.054 -17.066 -31.593 1 36.62 ? C30 3YA 1102 A 1 HETATM 30 C C31 3YA . . . C 3 25.699 -15.597 -31.735 1 43.71 ? C31 3YA 1102 A 1 HETATM 31 C C32 3YA . . . C 3 25.379 -15.267 -33.182 1 49.35 ? C32 3YA 1102 A 1 HETATM 32 C C33 3YA . . . C 3 24.195 -15.979 -33.787 1 53.05 ? C33 3YA 1102 A 1 HETATM 33 C C15 3YA . . . C 3 22.966 -15.335 -33.863 1 55.54 ? C15 3YA 1102 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #