data_4ZYV # _model_server_result.job_id gRubRyZN_W4WFJIEOLFMFA _model_server_result.datetime_utc '2024-10-10 21:20:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 4ZYV # _exptl.entry_id 4ZYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.492 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-({5-[4-(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-2-yl}carbonyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYV _cell.length_a 75.203 _cell.length_b 75.203 _cell.length_c 100.626 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N5 O6 S' _chem_comp.formula_weight 461.492 _chem_comp.id G71 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-({5-[4-(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-2-yl}carbonyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C2 G71 sing 83 n n N3 C2 G71 doub 84 n n N3 C4 G71 sing 85 n n C2 N1 G71 sing 86 n n O10 C4 G71 doub 87 n n C4 C8 G71 sing 88 n n N1 C9 G71 sing 89 n n C8 C9 G71 doub 90 n y C8 C7 G71 sing 91 n y C9 N5 G71 sing 92 n y C7 C6 G71 doub 93 n y N5 C6 G71 sing 94 n y C6 C29 G71 sing 95 n n C29 C30 G71 sing 96 n n C30 C31 G71 sing 97 n n C31 C32 G71 sing 98 n n O28 C26 G71 doub 99 n n C32 C16 G71 sing 100 n n C16 C15 G71 doub 101 n y C16 S12 G71 sing 102 n y C15 C14 G71 sing 103 n y S12 C13 G71 sing 104 n y C26 O27 G71 sing 105 n n C26 C20 G71 sing 106 n n C14 C13 G71 doub 107 n y C13 C17 G71 sing 108 n n C17 N19 G71 sing 109 n n C17 O18 G71 doub 110 n n N19 C20 G71 sing 111 n n C20 C21 G71 sing 112 n n C21 C22 G71 sing 113 n n C22 C23 G71 sing 114 n n C23 O24 G71 doub 115 n n C23 O25 G71 sing 116 n n N5 H2 G71 sing 117 n n C7 H3 G71 sing 118 n n N11 H4 G71 sing 119 n n N11 H5 G71 sing 120 n n C14 H6 G71 sing 121 n n C15 H7 G71 sing 122 n n N19 H8 G71 sing 123 n n C20 H9 G71 sing 124 n n C21 H10 G71 sing 125 n n C21 H11 G71 sing 126 n n C22 H12 G71 sing 127 n n C22 H13 G71 sing 128 n n O25 H14 G71 sing 129 n n O27 H15 G71 sing 130 n n C29 H16 G71 sing 131 n n C29 H17 G71 sing 132 n n C30 H18 G71 sing 133 n n C30 H19 G71 sing 134 n n C31 H20 G71 sing 135 n n C31 H21 G71 sing 136 n n C32 H22 G71 sing 137 n n C32 H23 G71 sing 138 n n N1 H24 G71 sing 139 n n # _atom_sites.entry_id 4ZYV _atom_sites.fract_transf_matrix[1][1] 0.013297 _atom_sites.fract_transf_matrix[1][2] 0.007677 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1017 GAR GAR . C 3 G71 A 1 1102 1018 G71 G71 . D 4 HOH A 1 1201 17 HOH HOH . D 4 HOH A 2 1202 58 HOH HOH . D 4 HOH A 3 1203 105 HOH HOH . D 4 HOH A 4 1204 49 HOH HOH . D 4 HOH A 5 1205 11 HOH HOH . D 4 HOH A 6 1206 100 HOH HOH . D 4 HOH A 7 1207 72 HOH HOH . D 4 HOH A 8 1208 63 HOH HOH . D 4 HOH A 9 1209 104 HOH HOH . D 4 HOH A 10 1210 83 HOH HOH . D 4 HOH A 11 1211 46 HOH HOH . D 4 HOH A 12 1212 59 HOH HOH . D 4 HOH A 13 1213 64 HOH HOH . D 4 HOH A 14 1214 3 HOH HOH . D 4 HOH A 15 1215 32 HOH HOH . D 4 HOH A 16 1216 24 HOH HOH . D 4 HOH A 17 1217 9 HOH HOH . D 4 HOH A 18 1218 23 HOH HOH . D 4 HOH A 19 1219 20 HOH HOH . D 4 HOH A 20 1220 86 HOH HOH . D 4 HOH A 21 1221 48 HOH HOH . D 4 HOH A 22 1222 77 HOH HOH . D 4 HOH A 23 1223 2 HOH HOH . D 4 HOH A 24 1224 26 HOH HOH . D 4 HOH A 25 1225 5 HOH HOH . D 4 HOH A 26 1226 52 HOH HOH . D 4 HOH A 27 1227 44 HOH HOH . D 4 HOH A 28 1228 43 HOH HOH . D 4 HOH A 29 1229 61 HOH HOH . D 4 HOH A 30 1230 50 HOH HOH . D 4 HOH A 31 1231 42 HOH HOH . D 4 HOH A 32 1232 54 HOH HOH . D 4 HOH A 33 1233 13 HOH HOH . D 4 HOH A 34 1234 6 HOH HOH . D 4 HOH A 35 1235 102 HOH HOH . D 4 HOH A 36 1236 15 HOH HOH . D 4 HOH A 37 1237 27 HOH HOH . D 4 HOH A 38 1238 60 HOH HOH . D 4 HOH A 39 1239 107 HOH HOH . D 4 HOH A 40 1240 33 HOH HOH . D 4 HOH A 41 1241 36 HOH HOH . D 4 HOH A 42 1242 29 HOH HOH . D 4 HOH A 43 1243 21 HOH HOH . D 4 HOH A 44 1244 8 HOH HOH . D 4 HOH A 45 1245 7 HOH HOH . D 4 HOH A 46 1246 51 HOH HOH . D 4 HOH A 47 1247 79 HOH HOH . D 4 HOH A 48 1248 22 HOH HOH . D 4 HOH A 49 1249 14 HOH HOH . D 4 HOH A 50 1250 39 HOH HOH . D 4 HOH A 51 1251 45 HOH HOH . D 4 HOH A 52 1252 28 HOH HOH . D 4 HOH A 53 1253 30 HOH HOH . D 4 HOH A 54 1254 67 HOH HOH . D 4 HOH A 55 1255 47 HOH HOH . D 4 HOH A 56 1256 37 HOH HOH . D 4 HOH A 57 1257 41 HOH HOH . D 4 HOH A 58 1258 55 HOH HOH . D 4 HOH A 59 1259 71 HOH HOH . D 4 HOH A 60 1260 116 HOH HOH . D 4 HOH A 61 1261 4 HOH HOH . D 4 HOH A 62 1262 90 HOH HOH . D 4 HOH A 63 1263 10 HOH HOH . D 4 HOH A 64 1264 112 HOH HOH . D 4 HOH A 65 1265 31 HOH HOH . D 4 HOH A 66 1266 115 HOH HOH . D 4 HOH A 67 1267 85 HOH HOH . D 4 HOH A 68 1268 1 HOH HOH . D 4 HOH A 69 1269 78 HOH HOH . D 4 HOH A 70 1270 91 HOH HOH . D 4 HOH A 71 1271 62 HOH HOH . D 4 HOH A 72 1272 34 HOH HOH . D 4 HOH A 73 1273 93 HOH HOH . D 4 HOH A 74 1274 87 HOH HOH . D 4 HOH A 75 1275 84 HOH HOH . D 4 HOH A 76 1276 25 HOH HOH . D 4 HOH A 77 1277 108 HOH HOH . D 4 HOH A 78 1278 16 HOH HOH . D 4 HOH A 79 1279 35 HOH HOH . D 4 HOH A 80 1280 73 HOH HOH . D 4 HOH A 81 1281 70 HOH HOH . D 4 HOH A 82 1282 38 HOH HOH . D 4 HOH A 83 1283 75 HOH HOH . D 4 HOH A 84 1284 101 HOH HOH . D 4 HOH A 85 1285 68 HOH HOH . D 4 HOH A 86 1286 106 HOH HOH . D 4 HOH A 87 1287 18 HOH HOH . D 4 HOH A 88 1288 95 HOH HOH . D 4 HOH A 89 1289 40 HOH HOH . D 4 HOH A 90 1290 65 HOH HOH . D 4 HOH A 91 1291 74 HOH HOH . D 4 HOH A 92 1292 97 HOH HOH . D 4 HOH A 93 1293 114 HOH HOH . D 4 HOH A 94 1294 19 HOH HOH . D 4 HOH A 95 1295 82 HOH HOH . D 4 HOH A 96 1296 57 HOH HOH . D 4 HOH A 97 1297 53 HOH HOH . D 4 HOH A 98 1298 66 HOH HOH . D 4 HOH A 99 1299 99 HOH HOH . D 4 HOH A 100 1300 89 HOH HOH . D 4 HOH A 101 1301 118 HOH HOH . D 4 HOH A 102 1302 110 HOH HOH . D 4 HOH A 103 1303 111 HOH HOH . D 4 HOH A 104 1304 69 HOH HOH . D 4 HOH A 105 1305 94 HOH HOH . D 4 HOH A 106 1306 98 HOH HOH . D 4 HOH A 107 1307 12 HOH HOH . D 4 HOH A 108 1308 88 HOH HOH . D 4 HOH A 109 1309 80 HOH HOH . D 4 HOH A 110 1310 56 HOH HOH . D 4 HOH A 111 1311 103 HOH HOH . D 4 HOH A 112 1312 96 HOH HOH . D 4 HOH A 113 1313 92 HOH HOH . D 4 HOH A 114 1314 81 HOH HOH . D 4 HOH A 115 1315 109 HOH HOH . D 4 HOH A 116 1316 119 HOH HOH . D 4 HOH A 117 1317 76 HOH HOH . D 4 HOH A 118 1318 117 HOH HOH . D 4 HOH A 119 1319 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 G71 . . . C 3 15.26 48.26 60.604 1 28.54 ? N1 G71 1102 A 1 HETATM 2 C C2 G71 . . . C 3 15.682 49.163 59.713 1 30.38 ? C2 G71 1102 A 1 HETATM 3 N N3 G71 . . . C 3 14.991 50.297 59.517 1 29.91 ? N3 G71 1102 A 1 HETATM 4 C C4 G71 . . . C 3 13.861 50.577 60.198 1 25.26 ? C4 G71 1102 A 1 HETATM 5 N N5 G71 . . . C 3 13.548 47.715 62.235 1 30.87 ? N5 G71 1102 A 1 HETATM 6 C C6 G71 . . . C 3 12.445 48.325 62.689 1 30.82 ? C6 G71 1102 A 1 HETATM 7 C C7 G71 . . . C 3 12.308 49.546 62.015 1 31.77 ? C7 G71 1102 A 1 HETATM 8 C C8 G71 . . . C 3 13.394 49.643 61.133 1 29.28 ? C8 G71 1102 A 1 HETATM 9 C C9 G71 . . . C 3 14.141 48.469 61.315 1 26.24 ? C9 G71 1102 A 1 HETATM 10 O O10 G71 . . . C 3 13.208 51.768 59.948 1 27.62 ? O10 G71 1102 A 1 HETATM 11 N N11 G71 . . . C 3 16.874 48.92 58.967 1 32 ? N11 G71 1102 A 1 HETATM 12 S S12 G71 . . . C 3 14.489 47.155 67.828 1 57.36 ? S12 G71 1102 A 1 HETATM 13 C C13 G71 . . . C 3 16.108 47.32 68.228 1 62.32 ? C13 G71 1102 A 1 HETATM 14 C C14 G71 . . . C 3 16.402 48.686 68.052 1 56.77 ? C14 G71 1102 A 1 HETATM 15 C C15 G71 . . . C 3 15.306 49.499 67.614 1 48.62 ? C15 G71 1102 A 1 HETATM 16 C C16 G71 . . . C 3 14.129 48.754 67.437 1 48.14 ? C16 G71 1102 A 1 HETATM 17 C C17 G71 . . . C 3 17.037 46.224 68.645 1 64.05 ? C17 G71 1102 A 1 HETATM 18 O O18 G71 . . . C 3 18.204 46.486 68.889 1 65.42 ? O18 G71 1102 A 1 HETATM 19 N N19 G71 . . . C 3 16.567 44.868 68.707 1 64.16 ? N19 G71 1102 A 1 HETATM 20 C C20 G71 . . . C 3 17.426 43.777 69.061 1 68.49 ? C20 G71 1102 A 1 HETATM 21 C C21 G71 . . . C 3 16.595 42.592 69.44 1 74.83 ? C21 G71 1102 A 1 HETATM 22 C C22 G71 . . . C 3 17.004 42.049 70.769 1 81.72 ? C22 G71 1102 A 1 HETATM 23 C C23 G71 . . . C 3 15.831 41.451 71.481 1 86.6 ? C23 G71 1102 A 1 HETATM 24 O O24 G71 . . . C 3 15.669 40.203 71.516 1 83.19 ? O24 G71 1102 A 1 HETATM 25 O O25 G71 . . . C 3 14.998 42.197 72.061 1 92.99 ? O25 G71 1102 A 1 HETATM 26 C C26 G71 . . . C 3 18.274 43.433 67.869 1 69.05 ? C26 G71 1102 A 1 HETATM 27 O O27 G71 . . . C 3 19.204 42.587 67.971 1 73.29 ? O27 G71 1102 A 1 HETATM 28 O O28 G71 . . . C 3 18.071 43.982 66.747 1 61.89 ? O28 G71 1102 A 1 HETATM 29 C C29 G71 . . . C 3 11.536 47.787 63.743 1 29.16 ? C29 G71 1102 A 1 HETATM 30 C C30 G71 . . . C 3 12.207 47.786 65.088 1 34.03 ? C30 G71 1102 A 1 HETATM 31 C C31 G71 . . . C 3 12.689 49.148 65.487 1 45.56 ? C31 G71 1102 A 1 HETATM 32 C C32 G71 . . . C 3 12.807 49.277 66.981 1 50.57 ? C32 G71 1102 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #