data_4ZYW # _model_server_result.job_id AENB2JYdSPmtgRZ77NQreg _model_server_result.datetime_utc '2024-11-24 01:07:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 4ZYW # _exptl.entry_id 4ZYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.16 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCINAMIDE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYW _cell.length_a 75.256 _cell.length_b 75.256 _cell.length_c 100.621 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H13 N2 O8 P -2' _chem_comp.formula_weight 284.16 _chem_comp.id GAR _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCINAMIDE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 GAR sing 137 n n C1 C2 GAR sing 138 n n C1 C5 GAR sing 139 n n C1 H1 GAR sing 140 n n O6 HO6 GAR sing 141 n n C2 O8 GAR sing 142 n n C2 C3 GAR sing 143 n n C2 H2 GAR sing 144 n n O8 HO8 GAR sing 145 n n C3 O4 GAR sing 146 n n C3 N19 GAR sing 147 n n C3 H3 GAR sing 148 n n O4 C5 GAR sing 149 n n C5 C10 GAR sing 150 n n C5 H5 GAR sing 151 n n C10 O12 GAR sing 152 n n C10 H101 GAR sing 153 n n C10 H102 GAR sing 154 n n O12 P15 GAR sing 155 n n N19 C21 GAR sing 156 n n N19 H19 GAR sing 157 n n C21 O22 GAR doub 158 n n C21 C23 GAR sing 159 n n C23 N24 GAR sing 160 n n C23 H231 GAR sing 161 n n C23 H232 GAR sing 162 n n N24 H241 GAR sing 163 n n N24 H242 GAR sing 164 n n P15 O16 GAR doub 165 n n P15 O17 GAR sing 166 n n P15 O18 GAR sing 167 n n # _atom_sites.entry_id 4ZYW _atom_sites.fract_transf_matrix[1][1] 0.013288 _atom_sites.fract_transf_matrix[1][2] 0.007672 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1016 GAR GAR . C 3 G94 A 1 1102 1017 G94 G94 . D 4 HOH A 1 1201 103 HOH HOH . D 4 HOH A 2 1202 30 HOH HOH . D 4 HOH A 3 1203 79 HOH HOH . D 4 HOH A 4 1204 68 HOH HOH . D 4 HOH A 5 1205 35 HOH HOH . D 4 HOH A 6 1206 84 HOH HOH . D 4 HOH A 7 1207 56 HOH HOH . D 4 HOH A 8 1208 58 HOH HOH . D 4 HOH A 9 1209 4 HOH HOH . D 4 HOH A 10 1210 33 HOH HOH . D 4 HOH A 11 1211 41 HOH HOH . D 4 HOH A 12 1212 36 HOH HOH . D 4 HOH A 13 1213 100 HOH HOH . D 4 HOH A 14 1214 86 HOH HOH . D 4 HOH A 15 1215 101 HOH HOH . D 4 HOH A 16 1216 32 HOH HOH . D 4 HOH A 17 1217 62 HOH HOH . D 4 HOH A 18 1218 13 HOH HOH . D 4 HOH A 19 1219 91 HOH HOH . D 4 HOH A 20 1220 15 HOH HOH . D 4 HOH A 21 1221 42 HOH HOH . D 4 HOH A 22 1222 19 HOH HOH . D 4 HOH A 23 1223 10 HOH HOH . D 4 HOH A 24 1224 7 HOH HOH . D 4 HOH A 25 1225 24 HOH HOH . D 4 HOH A 26 1226 38 HOH HOH . D 4 HOH A 27 1227 47 HOH HOH . D 4 HOH A 28 1228 55 HOH HOH . D 4 HOH A 29 1229 59 HOH HOH . D 4 HOH A 30 1230 46 HOH HOH . D 4 HOH A 31 1231 9 HOH HOH . D 4 HOH A 32 1232 16 HOH HOH . D 4 HOH A 33 1233 2 HOH HOH . D 4 HOH A 34 1234 74 HOH HOH . D 4 HOH A 35 1235 52 HOH HOH . D 4 HOH A 36 1236 22 HOH HOH . D 4 HOH A 37 1237 20 HOH HOH . D 4 HOH A 38 1238 67 HOH HOH . D 4 HOH A 39 1239 28 HOH HOH . D 4 HOH A 40 1240 69 HOH HOH . D 4 HOH A 41 1241 3 HOH HOH . D 4 HOH A 42 1242 37 HOH HOH . D 4 HOH A 43 1243 14 HOH HOH . D 4 HOH A 44 1244 53 HOH HOH . D 4 HOH A 45 1245 99 HOH HOH . D 4 HOH A 46 1246 75 HOH HOH . D 4 HOH A 47 1247 70 HOH HOH . D 4 HOH A 48 1248 63 HOH HOH . D 4 HOH A 49 1249 82 HOH HOH . D 4 HOH A 50 1250 44 HOH HOH . D 4 HOH A 51 1251 104 HOH HOH . D 4 HOH A 52 1252 85 HOH HOH . D 4 HOH A 53 1253 87 HOH HOH . D 4 HOH A 54 1254 6 HOH HOH . D 4 HOH A 55 1255 39 HOH HOH . D 4 HOH A 56 1256 88 HOH HOH . D 4 HOH A 57 1257 48 HOH HOH . D 4 HOH A 58 1258 61 HOH HOH . D 4 HOH A 59 1259 31 HOH HOH . D 4 HOH A 60 1260 66 HOH HOH . D 4 HOH A 61 1261 23 HOH HOH . D 4 HOH A 62 1262 26 HOH HOH . D 4 HOH A 63 1263 5 HOH HOH . D 4 HOH A 64 1264 17 HOH HOH . D 4 HOH A 65 1265 34 HOH HOH . D 4 HOH A 66 1266 51 HOH HOH . D 4 HOH A 67 1267 27 HOH HOH . D 4 HOH A 68 1268 43 HOH HOH . D 4 HOH A 69 1269 8 HOH HOH . D 4 HOH A 70 1270 96 HOH HOH . D 4 HOH A 71 1271 102 HOH HOH . D 4 HOH A 72 1272 40 HOH HOH . D 4 HOH A 73 1273 12 HOH HOH . D 4 HOH A 74 1274 76 HOH HOH . D 4 HOH A 75 1275 21 HOH HOH . D 4 HOH A 76 1276 18 HOH HOH . D 4 HOH A 77 1277 57 HOH HOH . D 4 HOH A 78 1278 95 HOH HOH . D 4 HOH A 79 1279 89 HOH HOH . D 4 HOH A 80 1280 49 HOH HOH . D 4 HOH A 81 1281 54 HOH HOH . D 4 HOH A 82 1282 11 HOH HOH . D 4 HOH A 83 1283 1 HOH HOH . D 4 HOH A 84 1284 78 HOH HOH . D 4 HOH A 85 1285 60 HOH HOH . D 4 HOH A 86 1286 73 HOH HOH . D 4 HOH A 87 1287 29 HOH HOH . D 4 HOH A 88 1288 72 HOH HOH . D 4 HOH A 89 1289 50 HOH HOH . D 4 HOH A 90 1290 92 HOH HOH . D 4 HOH A 91 1291 94 HOH HOH . D 4 HOH A 92 1292 80 HOH HOH . D 4 HOH A 93 1293 25 HOH HOH . D 4 HOH A 94 1294 93 HOH HOH . D 4 HOH A 95 1295 98 HOH HOH . D 4 HOH A 96 1296 97 HOH HOH . D 4 HOH A 97 1297 45 HOH HOH . D 4 HOH A 98 1298 90 HOH HOH . D 4 HOH A 99 1299 83 HOH HOH . D 4 HOH A 100 1300 71 HOH HOH . D 4 HOH A 101 1301 64 HOH HOH . D 4 HOH A 102 1302 65 HOH HOH . D 4 HOH A 103 1303 77 HOH HOH . D 4 HOH A 104 1304 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAR . . . B 2 6.009 86.455 136.208 1 29.53 ? C1 GAR 1101 A 1 HETATM 2 O O6 GAR . . . B 2 6.768 87.276 137.117 1 24.57 ? O6 GAR 1101 A 1 HETATM 3 C C2 GAR . . . B 2 6.954 85.886 135.161 1 30.31 ? C2 GAR 1101 A 1 HETATM 4 O O8 GAR . . . B 2 7.986 86.792 134.751 1 30.98 ? O8 GAR 1101 A 1 HETATM 5 C C3 GAR . . . B 2 7.523 84.661 135.847 1 29.56 ? C3 GAR 1101 A 1 HETATM 6 O O4 GAR . . . B 2 6.406 84.142 136.574 1 30.24 ? O4 GAR 1101 A 1 HETATM 7 C C5 GAR . . . B 2 5.491 85.202 136.912 1 31.3 ? C5 GAR 1101 A 1 HETATM 8 C C10 GAR . . . B 2 4.085 84.812 136.457 1 28.09 ? C10 GAR 1101 A 1 HETATM 9 O O12 GAR . . . B 2 3.095 85.72 136.957 1 30.3 ? O12 GAR 1101 A 1 HETATM 10 N N19 GAR . . . B 2 8.037 83.711 134.884 1 29.88 ? N19 GAR 1101 A 1 HETATM 11 C C21 GAR . . . B 2 9.146 83.002 135.113 1 32.95 ? C21 GAR 1101 A 1 HETATM 12 O O22 GAR . . . B 2 9.752 83.02 136.188 1 31.18 ? O22 GAR 1101 A 1 HETATM 13 C C23 GAR . . . B 2 9.624 82.153 133.949 1 32.16 ? C23 GAR 1101 A 1 HETATM 14 N N24 GAR . . . B 2 10.72 81.272 134.326 1 32.59 ? N24 GAR 1101 A 1 HETATM 15 P P15 GAR . . . B 2 1.608 85.808 136.297 1 30.43 ? P15 GAR 1101 A 1 HETATM 16 O O16 GAR . . . B 2 1.88 86.261 134.874 1 27.36 ? O16 GAR 1101 A 1 HETATM 17 O O17 GAR . . . B 2 0.863 86.802 137.163 1 26.25 ? O17 GAR 1101 A 1 HETATM 18 O O18 GAR . . . B 2 1.035 84.404 136.379 1 31.78 ? O18 GAR 1101 A 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #