data_4ZYW # _model_server_result.job_id 1nKy3NcJGtMhhvIDaWgrQg _model_server_result.datetime_utc '2024-10-10 19:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 4ZYW # _exptl.entry_id 4ZYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.465 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-({5-[3-(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-6-yl)propyl]thiophen-2-yl}carbonyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYW _cell.length_a 75.256 _cell.length_b 75.256 _cell.length_c 100.621 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H21 N5 O6 S' _chem_comp.formula_weight 447.465 _chem_comp.id G94 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-({5-[3-(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-6-yl)propyl]thiophen-2-yl}carbonyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C2 G94 sing 83 n n N3 C2 G94 doub 84 n n N3 C4 G94 sing 85 n n C2 N1 G94 sing 86 n n O10 C4 G94 doub 87 n n C4 C8 G94 sing 88 n n N1 C9 G94 sing 89 n n C8 C9 G94 doub 90 n y C8 C7 G94 sing 91 n y C9 N5 G94 sing 92 n y C7 C6 G94 doub 93 n y N5 C6 G94 sing 94 n y C6 C29 G94 sing 95 n n C29 C30 G94 sing 96 n n C30 C31 G94 sing 97 n n C31 C16 G94 sing 98 n n O24 C23 G94 doub 99 n n C16 C15 G94 doub 100 n y C16 S12 G94 sing 101 n y C15 C14 G94 sing 102 n y C23 O25 G94 sing 103 n n C23 C22 G94 sing 104 n n S12 C13 G94 sing 105 n y C14 C13 G94 doub 106 n y C22 C21 G94 sing 107 n n C13 C17 G94 sing 108 n n C21 C20 G94 sing 109 n n C17 N19 G94 sing 110 n n C17 O18 G94 doub 111 n n C20 N19 G94 sing 112 n n C20 C26 G94 sing 113 n n C26 O27 G94 doub 114 n n C26 O28 G94 sing 115 n n N5 H2 G94 sing 116 n n C7 H3 G94 sing 117 n n N11 H4 G94 sing 118 n n N11 H5 G94 sing 119 n n C14 H6 G94 sing 120 n n C15 H7 G94 sing 121 n n N19 H8 G94 sing 122 n n C20 H9 G94 sing 123 n n C21 H10 G94 sing 124 n n C21 H11 G94 sing 125 n n C22 H12 G94 sing 126 n n C22 H13 G94 sing 127 n n O25 H14 G94 sing 128 n n O28 H15 G94 sing 129 n n C29 H16 G94 sing 130 n n C29 H17 G94 sing 131 n n C30 H18 G94 sing 132 n n C30 H19 G94 sing 133 n n C31 H20 G94 sing 134 n n C31 H21 G94 sing 135 n n N1 H22 G94 sing 136 n n # _atom_sites.entry_id 4ZYW _atom_sites.fract_transf_matrix[1][1] 0.013288 _atom_sites.fract_transf_matrix[1][2] 0.007672 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1016 GAR GAR . C 3 G94 A 1 1102 1017 G94 G94 . D 4 HOH A 1 1201 103 HOH HOH . D 4 HOH A 2 1202 30 HOH HOH . D 4 HOH A 3 1203 79 HOH HOH . D 4 HOH A 4 1204 68 HOH HOH . D 4 HOH A 5 1205 35 HOH HOH . D 4 HOH A 6 1206 84 HOH HOH . D 4 HOH A 7 1207 56 HOH HOH . D 4 HOH A 8 1208 58 HOH HOH . D 4 HOH A 9 1209 4 HOH HOH . D 4 HOH A 10 1210 33 HOH HOH . D 4 HOH A 11 1211 41 HOH HOH . D 4 HOH A 12 1212 36 HOH HOH . D 4 HOH A 13 1213 100 HOH HOH . D 4 HOH A 14 1214 86 HOH HOH . D 4 HOH A 15 1215 101 HOH HOH . D 4 HOH A 16 1216 32 HOH HOH . D 4 HOH A 17 1217 62 HOH HOH . D 4 HOH A 18 1218 13 HOH HOH . D 4 HOH A 19 1219 91 HOH HOH . D 4 HOH A 20 1220 15 HOH HOH . D 4 HOH A 21 1221 42 HOH HOH . D 4 HOH A 22 1222 19 HOH HOH . D 4 HOH A 23 1223 10 HOH HOH . D 4 HOH A 24 1224 7 HOH HOH . D 4 HOH A 25 1225 24 HOH HOH . D 4 HOH A 26 1226 38 HOH HOH . D 4 HOH A 27 1227 47 HOH HOH . D 4 HOH A 28 1228 55 HOH HOH . D 4 HOH A 29 1229 59 HOH HOH . D 4 HOH A 30 1230 46 HOH HOH . D 4 HOH A 31 1231 9 HOH HOH . D 4 HOH A 32 1232 16 HOH HOH . D 4 HOH A 33 1233 2 HOH HOH . D 4 HOH A 34 1234 74 HOH HOH . D 4 HOH A 35 1235 52 HOH HOH . D 4 HOH A 36 1236 22 HOH HOH . D 4 HOH A 37 1237 20 HOH HOH . D 4 HOH A 38 1238 67 HOH HOH . D 4 HOH A 39 1239 28 HOH HOH . D 4 HOH A 40 1240 69 HOH HOH . D 4 HOH A 41 1241 3 HOH HOH . D 4 HOH A 42 1242 37 HOH HOH . D 4 HOH A 43 1243 14 HOH HOH . D 4 HOH A 44 1244 53 HOH HOH . D 4 HOH A 45 1245 99 HOH HOH . D 4 HOH A 46 1246 75 HOH HOH . D 4 HOH A 47 1247 70 HOH HOH . D 4 HOH A 48 1248 63 HOH HOH . D 4 HOH A 49 1249 82 HOH HOH . D 4 HOH A 50 1250 44 HOH HOH . D 4 HOH A 51 1251 104 HOH HOH . D 4 HOH A 52 1252 85 HOH HOH . D 4 HOH A 53 1253 87 HOH HOH . D 4 HOH A 54 1254 6 HOH HOH . D 4 HOH A 55 1255 39 HOH HOH . D 4 HOH A 56 1256 88 HOH HOH . D 4 HOH A 57 1257 48 HOH HOH . D 4 HOH A 58 1258 61 HOH HOH . D 4 HOH A 59 1259 31 HOH HOH . D 4 HOH A 60 1260 66 HOH HOH . D 4 HOH A 61 1261 23 HOH HOH . D 4 HOH A 62 1262 26 HOH HOH . D 4 HOH A 63 1263 5 HOH HOH . D 4 HOH A 64 1264 17 HOH HOH . D 4 HOH A 65 1265 34 HOH HOH . D 4 HOH A 66 1266 51 HOH HOH . D 4 HOH A 67 1267 27 HOH HOH . D 4 HOH A 68 1268 43 HOH HOH . D 4 HOH A 69 1269 8 HOH HOH . D 4 HOH A 70 1270 96 HOH HOH . D 4 HOH A 71 1271 102 HOH HOH . D 4 HOH A 72 1272 40 HOH HOH . D 4 HOH A 73 1273 12 HOH HOH . D 4 HOH A 74 1274 76 HOH HOH . D 4 HOH A 75 1275 21 HOH HOH . D 4 HOH A 76 1276 18 HOH HOH . D 4 HOH A 77 1277 57 HOH HOH . D 4 HOH A 78 1278 95 HOH HOH . D 4 HOH A 79 1279 89 HOH HOH . D 4 HOH A 80 1280 49 HOH HOH . D 4 HOH A 81 1281 54 HOH HOH . D 4 HOH A 82 1282 11 HOH HOH . D 4 HOH A 83 1283 1 HOH HOH . D 4 HOH A 84 1284 78 HOH HOH . D 4 HOH A 85 1285 60 HOH HOH . D 4 HOH A 86 1286 73 HOH HOH . D 4 HOH A 87 1287 29 HOH HOH . D 4 HOH A 88 1288 72 HOH HOH . D 4 HOH A 89 1289 50 HOH HOH . D 4 HOH A 90 1290 92 HOH HOH . D 4 HOH A 91 1291 94 HOH HOH . D 4 HOH A 92 1292 80 HOH HOH . D 4 HOH A 93 1293 25 HOH HOH . D 4 HOH A 94 1294 93 HOH HOH . D 4 HOH A 95 1295 98 HOH HOH . D 4 HOH A 96 1296 97 HOH HOH . D 4 HOH A 97 1297 45 HOH HOH . D 4 HOH A 98 1298 90 HOH HOH . D 4 HOH A 99 1299 83 HOH HOH . D 4 HOH A 100 1300 71 HOH HOH . D 4 HOH A 101 1301 64 HOH HOH . D 4 HOH A 102 1302 65 HOH HOH . D 4 HOH A 103 1303 77 HOH HOH . D 4 HOH A 104 1304 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 G94 . . . C 3 11.86 76.127 127.381 1 25.32 ? N1 G94 1102 A 1 HETATM 2 C C2 G94 . . . C 3 12.889 76.254 126.556 1 27.9 ? C2 G94 1102 A 1 HETATM 3 N N3 G94 . . . C 3 13.545 77.422 126.411 1 27.28 ? N3 G94 1102 A 1 HETATM 4 C C4 G94 . . . C 3 13.196 78.515 127.11 1 25 ? C4 G94 1102 A 1 HETATM 5 N N5 G94 . . . C 3 10.442 77.268 129.002 1 26.06 ? N5 G94 1102 A 1 HETATM 6 C C6 G94 . . . C 3 10.393 78.503 129.502 1 25.72 ? C6 G94 1102 A 1 HETATM 7 C C7 G94 . . . C 3 11.415 79.296 128.915 1 25.94 ? C7 G94 1102 A 1 HETATM 8 C C8 G94 . . . C 3 12.095 78.421 128.011 1 24.82 ? C8 G94 1102 A 1 HETATM 9 C C9 G94 . . . C 3 11.434 77.167 128.125 1 23.85 ? C9 G94 1102 A 1 HETATM 10 O O10 G94 . . . C 3 13.937 79.734 126.931 1 25.58 ? O10 G94 1102 A 1 HETATM 11 N N11 G94 . . . C 3 13.315 75.155 125.795 1 29.59 ? N11 G94 1102 A 1 HETATM 12 S S12 G94 . . . C 3 10.611 76.383 134.305 1 47.05 ? S12 G94 1102 A 1 HETATM 13 C C13 G94 . . . C 3 11.739 75.924 135.513 1 54.15 ? C13 G94 1102 A 1 HETATM 14 C C14 G94 . . . C 3 12.93 76.632 135.186 1 49.81 ? C14 G94 1102 A 1 HETATM 15 C C15 G94 . . . C 3 12.846 77.476 134.022 1 47.29 ? C15 G94 1102 A 1 HETATM 16 C C16 G94 . . . C 3 11.574 77.445 133.399 1 43.24 ? C16 G94 1102 A 1 HETATM 17 C C17 G94 . . . C 3 11.71 74.986 136.769 1 94.85 ? C17 G94 1102 A 1 HETATM 18 O O18 G94 . . . C 3 12.779 74.906 137.409 1 95.17 ? O18 G94 1102 A 1 HETATM 19 N N19 G94 . . . C 3 10.639 74.198 137.349 1 93.83 ? N19 G94 1102 A 1 HETATM 20 C C20 G94 . . . C 3 9.283 74.015 136.922 1 92.01 ? C20 G94 1102 A 1 HETATM 21 C C21 G94 . . . C 3 9.108 72.562 136.663 1 88.51 ? C21 G94 1102 A 1 HETATM 22 C C22 G94 . . . C 3 8.84 72.232 135.203 1 87.48 ? C22 G94 1102 A 1 HETATM 23 C C23 G94 . . . C 3 10.093 72.104 134.297 1 74.37 ? C23 G94 1102 A 1 HETATM 24 O O24 G94 . . . C 3 10.006 71.484 133.17 1 74.48 ? O24 G94 1102 A 1 HETATM 25 O O25 G94 . . . C 3 11.234 72.627 134.672 1 74.77 ? O25 G94 1102 A 1 HETATM 26 C C26 G94 . . . C 3 8.326 74.399 138.066 1 93.1 ? C26 G94 1102 A 1 HETATM 27 O O27 G94 . . . C 3 8.025 75.649 138.306 1 93.53 ? O27 G94 1102 A 1 HETATM 28 O O28 G94 . . . C 3 7.82 73.47 138.794 1 93.41 ? O28 G94 1102 A 1 HETATM 29 C C29 G94 . . . C 3 9.362 78.981 130.563 1 27.72 ? C29 G94 1102 A 1 HETATM 30 C C30 G94 . . . C 3 9.732 78.494 132.008 1 34.33 ? C30 G94 1102 A 1 HETATM 31 C C31 G94 . . . C 3 11.23 78.235 132.161 1 38.84 ? C31 G94 1102 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #