data_4ZYY # _model_server_result.job_id rjMnFMHknqRvp20DsvCAaQ _model_server_result.datetime_utc '2024-11-23 23:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 4ZYY # _exptl.entry_id 4ZYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.16 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCINAMIDE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYY _cell.length_a 75.005 _cell.length_b 75.005 _cell.length_c 100.853 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H13 N2 O8 P -2' _chem_comp.formula_weight 284.16 _chem_comp.id GAR _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCINAMIDE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 GAR sing 140 n n C1 C2 GAR sing 141 n n C1 C5 GAR sing 142 n n C1 H1 GAR sing 143 n n O6 HO6 GAR sing 144 n n C2 O8 GAR sing 145 n n C2 C3 GAR sing 146 n n C2 H2 GAR sing 147 n n O8 HO8 GAR sing 148 n n C3 O4 GAR sing 149 n n C3 N19 GAR sing 150 n n C3 H3 GAR sing 151 n n O4 C5 GAR sing 152 n n C5 C10 GAR sing 153 n n C5 H5 GAR sing 154 n n C10 O12 GAR sing 155 n n C10 H101 GAR sing 156 n n C10 H102 GAR sing 157 n n O12 P15 GAR sing 158 n n N19 C21 GAR sing 159 n n N19 H19 GAR sing 160 n n C21 O22 GAR doub 161 n n C21 C23 GAR sing 162 n n C23 N24 GAR sing 163 n n C23 H231 GAR sing 164 n n C23 H232 GAR sing 165 n n N24 H241 GAR sing 166 n n N24 H242 GAR sing 167 n n P15 O16 GAR doub 168 n n P15 O17 GAR sing 169 n n P15 O18 GAR sing 170 n n # _atom_sites.entry_id 4ZYY _atom_sites.fract_transf_matrix[1][1] 0.013332 _atom_sites.fract_transf_matrix[1][2] 0.007697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1016 GAR GAR . C 3 3YC A 1 1102 1017 3YC 4GD . D 4 HOH A 1 1201 16 HOH HOH . D 4 HOH A 2 1202 25 HOH HOH . D 4 HOH A 3 1203 102 HOH HOH . D 4 HOH A 4 1204 74 HOH HOH . D 4 HOH A 5 1205 127 HOH HOH . D 4 HOH A 6 1206 139 HOH HOH . D 4 HOH A 7 1207 73 HOH HOH . D 4 HOH A 8 1208 34 HOH HOH . D 4 HOH A 9 1209 14 HOH HOH . D 4 HOH A 10 1210 145 HOH HOH . D 4 HOH A 11 1211 49 HOH HOH . D 4 HOH A 12 1212 7 HOH HOH . D 4 HOH A 13 1213 4 HOH HOH . D 4 HOH A 14 1214 129 HOH HOH . D 4 HOH A 15 1215 43 HOH HOH . D 4 HOH A 16 1216 132 HOH HOH . D 4 HOH A 17 1217 113 HOH HOH . D 4 HOH A 18 1218 47 HOH HOH . D 4 HOH A 19 1219 31 HOH HOH . D 4 HOH A 20 1220 85 HOH HOH . D 4 HOH A 21 1221 10 HOH HOH . D 4 HOH A 22 1222 38 HOH HOH . D 4 HOH A 23 1223 6 HOH HOH . D 4 HOH A 24 1224 68 HOH HOH . D 4 HOH A 25 1225 91 HOH HOH . D 4 HOH A 26 1226 26 HOH HOH . D 4 HOH A 27 1227 84 HOH HOH . D 4 HOH A 28 1228 88 HOH HOH . D 4 HOH A 29 1229 80 HOH HOH . D 4 HOH A 30 1230 2 HOH HOH . D 4 HOH A 31 1231 39 HOH HOH . D 4 HOH A 32 1232 23 HOH HOH . D 4 HOH A 33 1233 28 HOH HOH . D 4 HOH A 34 1234 60 HOH HOH . D 4 HOH A 35 1235 11 HOH HOH . D 4 HOH A 36 1236 97 HOH HOH . D 4 HOH A 37 1237 29 HOH HOH . D 4 HOH A 38 1238 69 HOH HOH . D 4 HOH A 39 1239 8 HOH HOH . D 4 HOH A 40 1240 103 HOH HOH . D 4 HOH A 41 1241 36 HOH HOH . D 4 HOH A 42 1242 137 HOH HOH . D 4 HOH A 43 1243 33 HOH HOH . D 4 HOH A 44 1244 45 HOH HOH . D 4 HOH A 45 1245 13 HOH HOH . D 4 HOH A 46 1246 135 HOH HOH . D 4 HOH A 47 1247 52 HOH HOH . D 4 HOH A 48 1248 144 HOH HOH . D 4 HOH A 49 1249 12 HOH HOH . D 4 HOH A 50 1250 123 HOH HOH . D 4 HOH A 51 1251 35 HOH HOH . D 4 HOH A 52 1252 82 HOH HOH . D 4 HOH A 53 1253 86 HOH HOH . D 4 HOH A 54 1254 5 HOH HOH . D 4 HOH A 55 1255 30 HOH HOH . D 4 HOH A 56 1256 107 HOH HOH . D 4 HOH A 57 1257 51 HOH HOH . D 4 HOH A 58 1258 53 HOH HOH . D 4 HOH A 59 1259 40 HOH HOH . D 4 HOH A 60 1260 140 HOH HOH . D 4 HOH A 61 1261 67 HOH HOH . D 4 HOH A 62 1262 87 HOH HOH . D 4 HOH A 63 1263 104 HOH HOH . D 4 HOH A 64 1264 61 HOH HOH . D 4 HOH A 65 1265 93 HOH HOH . D 4 HOH A 66 1266 24 HOH HOH . D 4 HOH A 67 1267 70 HOH HOH . D 4 HOH A 68 1268 121 HOH HOH . D 4 HOH A 69 1269 64 HOH HOH . D 4 HOH A 70 1270 1 HOH HOH . D 4 HOH A 71 1271 146 HOH HOH . D 4 HOH A 72 1272 124 HOH HOH . D 4 HOH A 73 1273 58 HOH HOH . D 4 HOH A 74 1274 20 HOH HOH . D 4 HOH A 75 1275 57 HOH HOH . D 4 HOH A 76 1276 27 HOH HOH . D 4 HOH A 77 1277 110 HOH HOH . D 4 HOH A 78 1278 37 HOH HOH . D 4 HOH A 79 1279 81 HOH HOH . D 4 HOH A 80 1280 133 HOH HOH . D 4 HOH A 81 1281 122 HOH HOH . D 4 HOH A 82 1282 17 HOH HOH . D 4 HOH A 83 1283 95 HOH HOH . D 4 HOH A 84 1284 108 HOH HOH . D 4 HOH A 85 1285 44 HOH HOH . D 4 HOH A 86 1286 109 HOH HOH . D 4 HOH A 87 1287 120 HOH HOH . D 4 HOH A 88 1288 94 HOH HOH . D 4 HOH A 89 1289 19 HOH HOH . D 4 HOH A 90 1290 15 HOH HOH . D 4 HOH A 91 1291 42 HOH HOH . D 4 HOH A 92 1292 48 HOH HOH . D 4 HOH A 93 1293 3 HOH HOH . D 4 HOH A 94 1294 22 HOH HOH . D 4 HOH A 95 1295 55 HOH HOH . D 4 HOH A 96 1296 54 HOH HOH . D 4 HOH A 97 1297 62 HOH HOH . D 4 HOH A 98 1298 41 HOH HOH . D 4 HOH A 99 1299 9 HOH HOH . D 4 HOH A 100 1300 72 HOH HOH . D 4 HOH A 101 1301 66 HOH HOH . D 4 HOH A 102 1302 117 HOH HOH . D 4 HOH A 103 1303 76 HOH HOH . D 4 HOH A 104 1304 149 HOH HOH . D 4 HOH A 105 1305 71 HOH HOH . D 4 HOH A 106 1306 142 HOH HOH . D 4 HOH A 107 1307 98 HOH HOH . D 4 HOH A 108 1308 111 HOH HOH . D 4 HOH A 109 1309 83 HOH HOH . D 4 HOH A 110 1310 147 HOH HOH . D 4 HOH A 111 1311 143 HOH HOH . D 4 HOH A 112 1312 100 HOH HOH . D 4 HOH A 113 1313 134 HOH HOH . D 4 HOH A 114 1314 89 HOH HOH . D 4 HOH A 115 1315 119 HOH HOH . D 4 HOH A 116 1316 125 HOH HOH . D 4 HOH A 117 1317 101 HOH HOH . D 4 HOH A 118 1318 118 HOH HOH . D 4 HOH A 119 1319 32 HOH HOH . D 4 HOH A 120 1320 90 HOH HOH . D 4 HOH A 121 1321 138 HOH HOH . D 4 HOH A 122 1322 78 HOH HOH . D 4 HOH A 123 1323 126 HOH HOH . D 4 HOH A 124 1324 75 HOH HOH . D 4 HOH A 125 1325 114 HOH HOH . D 4 HOH A 126 1326 50 HOH HOH . D 4 HOH A 127 1327 148 HOH HOH . D 4 HOH A 128 1328 128 HOH HOH . D 4 HOH A 129 1329 150 HOH HOH . D 4 HOH A 130 1330 112 HOH HOH . D 4 HOH A 131 1331 106 HOH HOH . D 4 HOH A 132 1332 96 HOH HOH . D 4 HOH A 133 1333 115 HOH HOH . D 4 HOH A 134 1334 21 HOH HOH . D 4 HOH A 135 1335 59 HOH HOH . D 4 HOH A 136 1336 77 HOH HOH . D 4 HOH A 137 1337 136 HOH HOH . D 4 HOH A 138 1338 92 HOH HOH . D 4 HOH A 139 1339 131 HOH HOH . D 4 HOH A 140 1340 18 HOH HOH . D 4 HOH A 141 1341 46 HOH HOH . D 4 HOH A 142 1342 63 HOH HOH . D 4 HOH A 143 1343 105 HOH HOH . D 4 HOH A 144 1344 99 HOH HOH . D 4 HOH A 145 1345 116 HOH HOH . D 4 HOH A 146 1346 56 HOH HOH . D 4 HOH A 147 1347 141 HOH HOH . D 4 HOH A 148 1348 130 HOH HOH . D 4 HOH A 149 1349 79 HOH HOH . D 4 HOH A 150 1350 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAR . . . B 2 31.603 -21.212 35.578 0.84 24.46 ? C1 GAR 1101 A 1 HETATM 2 O O6 GAR . . . B 2 30.864 -22.063 36.456 0.84 24.34 ? O6 GAR 1101 A 1 HETATM 3 C C2 GAR . . . B 2 30.629 -20.607 34.6 0.84 21.82 ? C2 GAR 1101 A 1 HETATM 4 O O8 GAR . . . B 2 29.578 -21.493 34.239 0.84 22.46 ? O8 GAR 1101 A 1 HETATM 5 C C3 GAR . . . B 2 30.072 -19.43 35.382 0.84 23.2 ? C3 GAR 1101 A 1 HETATM 6 O O4 GAR . . . B 2 31.212 -18.921 36.072 0.84 21.45 ? O4 GAR 1101 A 1 HETATM 7 C C5 GAR . . . B 2 32.114 -20.004 36.353 0.84 24.74 ? C5 GAR 1101 A 1 HETATM 8 C C10 GAR . . . B 2 33.511 -19.624 35.892 0.84 19.41 ? C10 GAR 1101 A 1 HETATM 9 O O12 GAR . . . B 2 34.476 -20.59 36.297 0.84 22.6 ? O12 GAR 1101 A 1 HETATM 10 N N19 GAR . . . B 2 29.504 -18.459 34.48 0.84 26.68 ? N19 GAR 1101 A 1 HETATM 11 C C21 GAR . . . B 2 28.354 -17.85 34.742 0.84 31.79 ? C21 GAR 1101 A 1 HETATM 12 O O22 GAR . . . B 2 27.75 -17.962 35.809 0.84 26.44 ? O22 GAR 1101 A 1 HETATM 13 C C23 GAR . . . B 2 27.847 -16.988 33.612 0.84 34.56 ? C23 GAR 1101 A 1 HETATM 14 N N24 GAR . . . B 2 26.489 -16.54 33.831 0.84 40.19 ? N24 GAR 1101 A 1 HETATM 15 P P15 GAR . . . B 2 35.948 -20.626 35.641 0.84 20.45 ? P15 GAR 1101 A 1 HETATM 16 O O16 GAR . . . B 2 35.664 -21.02 34.221 0.84 17.29 ? O16 GAR 1101 A 1 HETATM 17 O O17 GAR . . . B 2 36.689 -21.63 36.503 0.84 18.18 ? O17 GAR 1101 A 1 HETATM 18 O O18 GAR . . . B 2 36.511 -19.212 35.751 0.84 22.04 ? O18 GAR 1101 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #