data_4ZYY # _model_server_result.job_id 5ahhrohSFRQcTkdduL0VdA _model_server_result.datetime_utc '2024-11-23 23:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 4ZYY # _exptl.entry_id 4ZYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.492 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S)-2-({5-[4-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]-pyrimidin-6-yl)butyl]thiophene-3-carbonyl}amino)pentanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZYY _cell.length_a 75.005 _cell.length_b 75.005 _cell.length_c 100.853 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N5 O6 S' _chem_comp.formula_weight 461.492 _chem_comp.id 3YC _chem_comp.mon_nstd_flag . _chem_comp.name '(S)-2-({5-[4-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]-pyrimidin-6-yl)butyl]thiophene-3-carbonyl}amino)pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C2 3YC sing 1 n n N3 C2 3YC sing 2 n n N3 C4 3YC sing 3 n n C2 N1 3YC doub 4 n n O10 C4 3YC doub 5 n n C4 C8 3YC sing 6 n n N1 C9 3YC sing 7 n n C8 C9 3YC doub 8 n y C8 C7 3YC sing 9 n y C9 N5 3YC sing 10 n y C7 C6 3YC doub 11 n y N5 C6 3YC sing 12 n y C6 C29 3YC sing 13 n n C29 C30 3YC sing 14 n n C30 C31 3YC sing 15 n n C31 C32 3YC sing 16 n n O28 C26 3YC doub 17 n n C32 C16 3YC sing 18 n n C16 S15 3YC sing 19 n y C16 C12 3YC doub 20 n y S15 C14 3YC sing 21 n y C26 O27 3YC sing 22 n n C26 C20 3YC sing 23 n n C12 C13 3YC sing 24 n y C14 C13 3YC doub 25 n y C13 C17 3YC sing 26 n n N19 C17 3YC sing 27 n n N19 C20 3YC sing 28 n n C17 O18 3YC doub 29 n n C20 C21 3YC sing 30 n n C21 C22 3YC sing 31 n n O24 C23 3YC doub 32 n n C22 C23 3YC sing 33 n n C23 O25 3YC sing 34 n n N3 H1 3YC sing 35 n n N5 H2 3YC sing 36 n n C7 H3 3YC sing 37 n n N11 H4 3YC sing 38 n n N11 H5 3YC sing 39 n n C12 H6 3YC sing 40 n n C14 H7 3YC sing 41 n n N19 H8 3YC sing 42 n n C20 H9 3YC sing 43 n n C21 H10 3YC sing 44 n n C21 H11 3YC sing 45 n n C22 H12 3YC sing 46 n n C22 H13 3YC sing 47 n n O25 H14 3YC sing 48 n n O27 H15 3YC sing 49 n n C29 H16 3YC sing 50 n n C29 H17 3YC sing 51 n n C30 H18 3YC sing 52 n n C30 H19 3YC sing 53 n n C31 H20 3YC sing 54 n n C31 H21 3YC sing 55 n n C32 H22 3YC sing 56 n n C32 H23 3YC sing 57 n n # _atom_sites.entry_id 4ZYY _atom_sites.fract_transf_matrix[1][1] 0.013332 _atom_sites.fract_transf_matrix[1][2] 0.007697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1016 GAR GAR . C 3 3YC A 1 1102 1017 3YC 4GD . D 4 HOH A 1 1201 16 HOH HOH . D 4 HOH A 2 1202 25 HOH HOH . D 4 HOH A 3 1203 102 HOH HOH . D 4 HOH A 4 1204 74 HOH HOH . D 4 HOH A 5 1205 127 HOH HOH . D 4 HOH A 6 1206 139 HOH HOH . D 4 HOH A 7 1207 73 HOH HOH . D 4 HOH A 8 1208 34 HOH HOH . D 4 HOH A 9 1209 14 HOH HOH . D 4 HOH A 10 1210 145 HOH HOH . D 4 HOH A 11 1211 49 HOH HOH . D 4 HOH A 12 1212 7 HOH HOH . D 4 HOH A 13 1213 4 HOH HOH . D 4 HOH A 14 1214 129 HOH HOH . D 4 HOH A 15 1215 43 HOH HOH . D 4 HOH A 16 1216 132 HOH HOH . D 4 HOH A 17 1217 113 HOH HOH . D 4 HOH A 18 1218 47 HOH HOH . D 4 HOH A 19 1219 31 HOH HOH . D 4 HOH A 20 1220 85 HOH HOH . D 4 HOH A 21 1221 10 HOH HOH . D 4 HOH A 22 1222 38 HOH HOH . D 4 HOH A 23 1223 6 HOH HOH . D 4 HOH A 24 1224 68 HOH HOH . D 4 HOH A 25 1225 91 HOH HOH . D 4 HOH A 26 1226 26 HOH HOH . D 4 HOH A 27 1227 84 HOH HOH . D 4 HOH A 28 1228 88 HOH HOH . D 4 HOH A 29 1229 80 HOH HOH . D 4 HOH A 30 1230 2 HOH HOH . D 4 HOH A 31 1231 39 HOH HOH . D 4 HOH A 32 1232 23 HOH HOH . D 4 HOH A 33 1233 28 HOH HOH . D 4 HOH A 34 1234 60 HOH HOH . D 4 HOH A 35 1235 11 HOH HOH . D 4 HOH A 36 1236 97 HOH HOH . D 4 HOH A 37 1237 29 HOH HOH . D 4 HOH A 38 1238 69 HOH HOH . D 4 HOH A 39 1239 8 HOH HOH . D 4 HOH A 40 1240 103 HOH HOH . D 4 HOH A 41 1241 36 HOH HOH . D 4 HOH A 42 1242 137 HOH HOH . D 4 HOH A 43 1243 33 HOH HOH . D 4 HOH A 44 1244 45 HOH HOH . D 4 HOH A 45 1245 13 HOH HOH . D 4 HOH A 46 1246 135 HOH HOH . D 4 HOH A 47 1247 52 HOH HOH . D 4 HOH A 48 1248 144 HOH HOH . D 4 HOH A 49 1249 12 HOH HOH . D 4 HOH A 50 1250 123 HOH HOH . D 4 HOH A 51 1251 35 HOH HOH . D 4 HOH A 52 1252 82 HOH HOH . D 4 HOH A 53 1253 86 HOH HOH . D 4 HOH A 54 1254 5 HOH HOH . D 4 HOH A 55 1255 30 HOH HOH . D 4 HOH A 56 1256 107 HOH HOH . D 4 HOH A 57 1257 51 HOH HOH . D 4 HOH A 58 1258 53 HOH HOH . D 4 HOH A 59 1259 40 HOH HOH . D 4 HOH A 60 1260 140 HOH HOH . D 4 HOH A 61 1261 67 HOH HOH . D 4 HOH A 62 1262 87 HOH HOH . D 4 HOH A 63 1263 104 HOH HOH . D 4 HOH A 64 1264 61 HOH HOH . D 4 HOH A 65 1265 93 HOH HOH . D 4 HOH A 66 1266 24 HOH HOH . D 4 HOH A 67 1267 70 HOH HOH . D 4 HOH A 68 1268 121 HOH HOH . D 4 HOH A 69 1269 64 HOH HOH . D 4 HOH A 70 1270 1 HOH HOH . D 4 HOH A 71 1271 146 HOH HOH . D 4 HOH A 72 1272 124 HOH HOH . D 4 HOH A 73 1273 58 HOH HOH . D 4 HOH A 74 1274 20 HOH HOH . D 4 HOH A 75 1275 57 HOH HOH . D 4 HOH A 76 1276 27 HOH HOH . D 4 HOH A 77 1277 110 HOH HOH . D 4 HOH A 78 1278 37 HOH HOH . D 4 HOH A 79 1279 81 HOH HOH . D 4 HOH A 80 1280 133 HOH HOH . D 4 HOH A 81 1281 122 HOH HOH . D 4 HOH A 82 1282 17 HOH HOH . D 4 HOH A 83 1283 95 HOH HOH . D 4 HOH A 84 1284 108 HOH HOH . D 4 HOH A 85 1285 44 HOH HOH . D 4 HOH A 86 1286 109 HOH HOH . D 4 HOH A 87 1287 120 HOH HOH . D 4 HOH A 88 1288 94 HOH HOH . D 4 HOH A 89 1289 19 HOH HOH . D 4 HOH A 90 1290 15 HOH HOH . D 4 HOH A 91 1291 42 HOH HOH . D 4 HOH A 92 1292 48 HOH HOH . D 4 HOH A 93 1293 3 HOH HOH . D 4 HOH A 94 1294 22 HOH HOH . D 4 HOH A 95 1295 55 HOH HOH . D 4 HOH A 96 1296 54 HOH HOH . D 4 HOH A 97 1297 62 HOH HOH . D 4 HOH A 98 1298 41 HOH HOH . D 4 HOH A 99 1299 9 HOH HOH . D 4 HOH A 100 1300 72 HOH HOH . D 4 HOH A 101 1301 66 HOH HOH . D 4 HOH A 102 1302 117 HOH HOH . D 4 HOH A 103 1303 76 HOH HOH . D 4 HOH A 104 1304 149 HOH HOH . D 4 HOH A 105 1305 71 HOH HOH . D 4 HOH A 106 1306 142 HOH HOH . D 4 HOH A 107 1307 98 HOH HOH . D 4 HOH A 108 1308 111 HOH HOH . D 4 HOH A 109 1309 83 HOH HOH . D 4 HOH A 110 1310 147 HOH HOH . D 4 HOH A 111 1311 143 HOH HOH . D 4 HOH A 112 1312 100 HOH HOH . D 4 HOH A 113 1313 134 HOH HOH . D 4 HOH A 114 1314 89 HOH HOH . D 4 HOH A 115 1315 119 HOH HOH . D 4 HOH A 116 1316 125 HOH HOH . D 4 HOH A 117 1317 101 HOH HOH . D 4 HOH A 118 1318 118 HOH HOH . D 4 HOH A 119 1319 32 HOH HOH . D 4 HOH A 120 1320 90 HOH HOH . D 4 HOH A 121 1321 138 HOH HOH . D 4 HOH A 122 1322 78 HOH HOH . D 4 HOH A 123 1323 126 HOH HOH . D 4 HOH A 124 1324 75 HOH HOH . D 4 HOH A 125 1325 114 HOH HOH . D 4 HOH A 126 1326 50 HOH HOH . D 4 HOH A 127 1327 148 HOH HOH . D 4 HOH A 128 1328 128 HOH HOH . D 4 HOH A 129 1329 150 HOH HOH . D 4 HOH A 130 1330 112 HOH HOH . D 4 HOH A 131 1331 106 HOH HOH . D 4 HOH A 132 1332 96 HOH HOH . D 4 HOH A 133 1333 115 HOH HOH . D 4 HOH A 134 1334 21 HOH HOH . D 4 HOH A 135 1335 59 HOH HOH . D 4 HOH A 136 1336 77 HOH HOH . D 4 HOH A 137 1337 136 HOH HOH . D 4 HOH A 138 1338 92 HOH HOH . D 4 HOH A 139 1339 131 HOH HOH . D 4 HOH A 140 1340 18 HOH HOH . D 4 HOH A 141 1341 46 HOH HOH . D 4 HOH A 142 1342 63 HOH HOH . D 4 HOH A 143 1343 105 HOH HOH . D 4 HOH A 144 1344 99 HOH HOH . D 4 HOH A 145 1345 116 HOH HOH . D 4 HOH A 146 1346 56 HOH HOH . D 4 HOH A 147 1347 141 HOH HOH . D 4 HOH A 148 1348 130 HOH HOH . D 4 HOH A 149 1349 79 HOH HOH . D 4 HOH A 150 1350 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 3YC . . . C 3 25.694 -10.73 26.837 1 25.85 ? N1 3YC 1102 A 1 HETATM 2 C C2 3YC . . . C 3 24.599 -10.859 26.09 1 24.54 ? C2 3YC 1102 A 1 HETATM 3 N N3 3YC . . . C 3 23.976 -12.047 25.996 1 26.3 ? N3 3YC 1102 A 1 HETATM 4 C C4 3YC . . . C 3 24.418 -13.139 26.664 1 21.05 ? C4 3YC 1102 A 1 HETATM 5 N N5 3YC . . . C 3 27.239 -11.871 28.316 1 21.57 ? N5 3YC 1102 A 1 HETATM 6 C C6 3YC . . . C 3 27.353 -13.115 28.788 1 25.12 ? C6 3YC 1102 A 1 HETATM 7 C C7 3YC . . . C 3 26.315 -13.887 28.27 1 24.87 ? C7 3YC 1102 A 1 HETATM 8 C C8 3YC . . . C 3 25.56 -13.024 27.451 1 22.51 ? C8 3YC 1102 A 1 HETATM 9 C C9 3YC . . . C 3 26.182 -11.774 27.523 1 23.15 ? C9 3YC 1102 A 1 HETATM 10 O O10 3YC . . . C 3 23.812 -14.197 26.555 1 24.03 ? O10 3YC 1102 A 1 HETATM 11 N N11 3YC . . . C 3 24.092 -9.733 25.372 1 26.58 ? N11 3YC 1102 A 1 HETATM 12 C C12 3YC . . . C 3 26.399 -11.047 33.971 1 40.01 ? C12 3YC 1102 A 1 HETATM 13 C C13 3YC . . . C 3 25.394 -10.161 34.415 1 46.4 ? C13 3YC 1102 A 1 HETATM 14 C C14 3YC . . . C 3 24.115 -10.634 34.374 1 41.85 ? C14 3YC 1102 A 1 HETATM 15 S S15 3YC . . . C 3 24.237 -12.221 33.752 1 43.66 ? S15 3YC 1102 A 1 HETATM 16 C C16 3YC . . . C 3 25.931 -12.258 33.574 1 41.25 ? C16 3YC 1102 A 1 HETATM 17 C C17 3YC . . . C 3 25.721 -8.832 34.861 1 50.56 ? C17 3YC 1102 A 1 HETATM 18 O O18 3YC . . . C 3 24.862 -8.14 35.387 1 50.35 ? O18 3YC 1102 A 1 HETATM 19 N N19 3YC . . . C 3 27.051 -8.335 34.649 1 54.33 ? N19 3YC 1102 A 1 HETATM 20 C C20 3YC . . . C 3 27.453 -7.099 35.018 1 58.8 ? C20 3YC 1102 A 1 HETATM 21 C C21 3YC . . . C 3 28.815 -7.147 35.402 1 62.48 ? C21 3YC 1102 A 1 HETATM 22 C C22 3YC . . . C 3 28.953 -7.352 36.871 1 71.39 ? C22 3YC 1102 A 1 HETATM 23 C C23 3YC . . . C 3 30.321 -7.872 37.162 1 81.28 ? C23 3YC 1102 A 1 HETATM 24 O O24 3YC . . . C 3 31.336 -7.246 36.748 1 83.9 ? O24 3YC 1102 A 1 HETATM 25 O O25 3YC . . . C 3 30.459 -8.94 37.819 1 83.96 ? O25 3YC 1102 A 1 HETATM 26 C C26 3YC . . . C 3 27.336 -6.198 33.934 1 60.89 ? C26 3YC 1102 A 1 HETATM 27 O O27 3YC . . . C 3 26.87 -5.045 34.133 1 68.2 ? O27 3YC 1102 A 1 HETATM 28 O O28 3YC . . . C 3 27.699 -6.525 32.767 1 47.92 ? O28 3YC 1102 A 1 HETATM 29 C C29 3YC . . . C 3 28.42 -13.586 29.707 1 23.03 ? C29 3YC 1102 A 1 HETATM 30 C C30 3YC . . . C 3 27.784 -14.072 30.965 1 28.7 ? C30 3YC 1102 A 1 HETATM 31 C C31 3YC . . . C 3 27.355 -12.898 31.768 1 32.85 ? C31 3YC 1102 A 1 HETATM 32 C C32 3YC . . . C 3 26.761 -13.375 33.051 1 42.53 ? C32 3YC 1102 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #