data_4ZYZ
#
_model_server_result.job_id            YnV00jZqJ2tRM1BZ-UJZ-A 
_model_server_result.datetime_utc      '2024-11-24 01:06:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zyz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    4ZYZ 
#
_exptl.entry_id    4ZYZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.16 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLYCINAMIDE RIBONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4ZYZ 
_cell.length_a            75.501 
_cell.length_b            75.501 
_cell.length_c            101.111 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZYZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H13 N2 O8 P -2' 
_chem_comp.formula_weight    284.16 
_chem_comp.id                GAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLYCINAMIDE RIBONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O6 GAR sing 138 n n 
C1 C2 GAR sing 139 n n 
C1 C5 GAR sing 140 n n 
C1 H1 GAR sing 141 n n 
O6 HO6 GAR sing 142 n n 
C2 O8 GAR sing 143 n n 
C2 C3 GAR sing 144 n n 
C2 H2 GAR sing 145 n n 
O8 HO8 GAR sing 146 n n 
C3 O4 GAR sing 147 n n 
C3 N19 GAR sing 148 n n 
C3 H3 GAR sing 149 n n 
O4 C5 GAR sing 150 n n 
C5 C10 GAR sing 151 n n 
C5 H5 GAR sing 152 n n 
C10 O12 GAR sing 153 n n 
C10 H101 GAR sing 154 n n 
C10 H102 GAR sing 155 n n 
O12 P15 GAR sing 156 n n 
N19 C21 GAR sing 157 n n 
N19 H19 GAR sing 158 n n 
C21 O22 GAR doub 159 n n 
C21 C23 GAR sing 160 n n 
C23 N24 GAR sing 161 n n 
C23 H231 GAR sing 162 n n 
C23 H232 GAR sing 163 n n 
N24 H241 GAR sing 164 n n 
N24 H242 GAR sing 165 n n 
P15 O16 GAR doub 166 n n 
P15 O17 GAR sing 167 n n 
P15 O18 GAR sing 168 n n 
#
_atom_sites.entry_id                     4ZYZ 
_atom_sites.fract_transf_matrix[1][1]    0.013245 
_atom_sites.fract_transf_matrix[1][2]    0.007647 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015294 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00989 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GAR A 1 1101 1016 GAR GAR . 
C 3 3YD A 1 1102 1017 3YD 5GD . 
D 4 HOH A 1 1201 129 HOH HOH . 
D 4 HOH A 2 1202 91 HOH HOH . 
D 4 HOH A 3 1203 163 HOH HOH . 
D 4 HOH A 4 1204 183 HOH HOH . 
D 4 HOH A 5 1205 161 HOH HOH . 
D 4 HOH A 6 1206 196 HOH HOH . 
D 4 HOH A 7 1207 200 HOH HOH . 
D 4 HOH A 8 1208 108 HOH HOH . 
D 4 HOH A 9 1209 96 HOH HOH . 
D 4 HOH A 10 1210 168 HOH HOH . 
D 4 HOH A 11 1211 193 HOH HOH . 
D 4 HOH A 12 1212 24 HOH HOH . 
D 4 HOH A 13 1213 90 HOH HOH . 
D 4 HOH A 14 1214 71 HOH HOH . 
D 4 HOH A 15 1215 101 HOH HOH . 
D 4 HOH A 16 1216 67 HOH HOH . 
D 4 HOH A 17 1217 36 HOH HOH . 
D 4 HOH A 18 1218 47 HOH HOH . 
D 4 HOH A 19 1219 7 HOH HOH . 
D 4 HOH A 20 1220 104 HOH HOH . 
D 4 HOH A 21 1221 85 HOH HOH . 
D 4 HOH A 22 1222 93 HOH HOH . 
D 4 HOH A 23 1223 11 HOH HOH . 
D 4 HOH A 24 1224 125 HOH HOH . 
D 4 HOH A 25 1225 138 HOH HOH . 
D 4 HOH A 26 1226 137 HOH HOH . 
D 4 HOH A 27 1227 188 HOH HOH . 
D 4 HOH A 28 1228 109 HOH HOH . 
D 4 HOH A 29 1229 10 HOH HOH . 
D 4 HOH A 30 1230 102 HOH HOH . 
D 4 HOH A 31 1231 43 HOH HOH . 
D 4 HOH A 32 1232 6 HOH HOH . 
D 4 HOH A 33 1233 82 HOH HOH . 
D 4 HOH A 34 1234 2 HOH HOH . 
D 4 HOH A 35 1235 34 HOH HOH . 
D 4 HOH A 36 1236 144 HOH HOH . 
D 4 HOH A 37 1237 131 HOH HOH . 
D 4 HOH A 38 1238 68 HOH HOH . 
D 4 HOH A 39 1239 48 HOH HOH . 
D 4 HOH A 40 1240 27 HOH HOH . 
D 4 HOH A 41 1241 35 HOH HOH . 
D 4 HOH A 42 1242 187 HOH HOH . 
D 4 HOH A 43 1243 28 HOH HOH . 
D 4 HOH A 44 1244 190 HOH HOH . 
D 4 HOH A 45 1245 199 HOH HOH . 
D 4 HOH A 46 1246 197 HOH HOH . 
D 4 HOH A 47 1247 31 HOH HOH . 
D 4 HOH A 48 1248 194 HOH HOH . 
D 4 HOH A 49 1249 75 HOH HOH . 
D 4 HOH A 50 1250 195 HOH HOH . 
D 4 HOH A 51 1251 33 HOH HOH . 
D 4 HOH A 52 1252 55 HOH HOH . 
D 4 HOH A 53 1253 25 HOH HOH . 
D 4 HOH A 54 1254 175 HOH HOH . 
D 4 HOH A 55 1255 140 HOH HOH . 
D 4 HOH A 56 1256 126 HOH HOH . 
D 4 HOH A 57 1257 122 HOH HOH . 
D 4 HOH A 58 1258 9 HOH HOH . 
D 4 HOH A 59 1259 52 HOH HOH . 
D 4 HOH A 60 1260 49 HOH HOH . 
D 4 HOH A 61 1261 4 HOH HOH . 
D 4 HOH A 62 1262 3 HOH HOH . 
D 4 HOH A 63 1263 105 HOH HOH . 
D 4 HOH A 64 1264 39 HOH HOH . 
D 4 HOH A 65 1265 150 HOH HOH . 
D 4 HOH A 66 1266 30 HOH HOH . 
D 4 HOH A 67 1267 73 HOH HOH . 
D 4 HOH A 68 1268 21 HOH HOH . 
D 4 HOH A 69 1269 145 HOH HOH . 
D 4 HOH A 70 1270 20 HOH HOH . 
D 4 HOH A 71 1271 17 HOH HOH . 
D 4 HOH A 72 1272 40 HOH HOH . 
D 4 HOH A 73 1273 38 HOH HOH . 
D 4 HOH A 74 1274 23 HOH HOH . 
D 4 HOH A 75 1275 76 HOH HOH . 
D 4 HOH A 76 1276 113 HOH HOH . 
D 4 HOH A 77 1277 16 HOH HOH . 
D 4 HOH A 78 1278 5 HOH HOH . 
D 4 HOH A 79 1279 62 HOH HOH . 
D 4 HOH A 80 1280 98 HOH HOH . 
D 4 HOH A 81 1281 46 HOH HOH . 
D 4 HOH A 82 1282 99 HOH HOH . 
D 4 HOH A 83 1283 162 HOH HOH . 
D 4 HOH A 84 1284 114 HOH HOH . 
D 4 HOH A 85 1285 132 HOH HOH . 
D 4 HOH A 86 1286 157 HOH HOH . 
D 4 HOH A 87 1287 1 HOH HOH . 
D 4 HOH A 88 1288 63 HOH HOH . 
D 4 HOH A 89 1289 178 HOH HOH . 
D 4 HOH A 90 1290 156 HOH HOH . 
D 4 HOH A 91 1291 37 HOH HOH . 
D 4 HOH A 92 1292 61 HOH HOH . 
D 4 HOH A 93 1293 116 HOH HOH . 
D 4 HOH A 94 1294 128 HOH HOH . 
D 4 HOH A 95 1295 171 HOH HOH . 
D 4 HOH A 96 1296 44 HOH HOH . 
D 4 HOH A 97 1297 69 HOH HOH . 
D 4 HOH A 98 1298 154 HOH HOH . 
D 4 HOH A 99 1299 184 HOH HOH . 
D 4 HOH A 100 1300 127 HOH HOH . 
D 4 HOH A 101 1301 174 HOH HOH . 
D 4 HOH A 102 1302 50 HOH HOH . 
D 4 HOH A 103 1303 89 HOH HOH . 
D 4 HOH A 104 1304 18 HOH HOH . 
D 4 HOH A 105 1305 123 HOH HOH . 
D 4 HOH A 106 1306 53 HOH HOH . 
D 4 HOH A 107 1307 26 HOH HOH . 
D 4 HOH A 108 1308 94 HOH HOH . 
D 4 HOH A 109 1309 167 HOH HOH . 
D 4 HOH A 110 1310 124 HOH HOH . 
D 4 HOH A 111 1311 8 HOH HOH . 
D 4 HOH A 112 1312 14 HOH HOH . 
D 4 HOH A 113 1313 51 HOH HOH . 
D 4 HOH A 114 1314 100 HOH HOH . 
D 4 HOH A 115 1315 42 HOH HOH . 
D 4 HOH A 116 1316 203 HOH HOH . 
D 4 HOH A 117 1317 70 HOH HOH . 
D 4 HOH A 118 1318 180 HOH HOH . 
D 4 HOH A 119 1319 72 HOH HOH . 
D 4 HOH A 120 1320 112 HOH HOH . 
D 4 HOH A 121 1321 202 HOH HOH . 
D 4 HOH A 122 1322 54 HOH HOH . 
D 4 HOH A 123 1323 41 HOH HOH . 
D 4 HOH A 124 1324 29 HOH HOH . 
D 4 HOH A 125 1325 106 HOH HOH . 
D 4 HOH A 126 1326 13 HOH HOH . 
D 4 HOH A 127 1327 115 HOH HOH . 
D 4 HOH A 128 1328 64 HOH HOH . 
D 4 HOH A 129 1329 66 HOH HOH . 
D 4 HOH A 130 1330 130 HOH HOH . 
D 4 HOH A 131 1331 12 HOH HOH . 
D 4 HOH A 132 1332 78 HOH HOH . 
D 4 HOH A 133 1333 160 HOH HOH . 
D 4 HOH A 134 1334 19 HOH HOH . 
D 4 HOH A 135 1335 83 HOH HOH . 
D 4 HOH A 136 1336 45 HOH HOH . 
D 4 HOH A 137 1337 88 HOH HOH . 
D 4 HOH A 138 1338 182 HOH HOH . 
D 4 HOH A 139 1339 192 HOH HOH . 
D 4 HOH A 140 1340 110 HOH HOH . 
D 4 HOH A 141 1341 60 HOH HOH . 
D 4 HOH A 142 1342 97 HOH HOH . 
D 4 HOH A 143 1343 172 HOH HOH . 
D 4 HOH A 144 1344 79 HOH HOH . 
D 4 HOH A 145 1345 133 HOH HOH . 
D 4 HOH A 146 1346 177 HOH HOH . 
D 4 HOH A 147 1347 135 HOH HOH . 
D 4 HOH A 148 1348 185 HOH HOH . 
D 4 HOH A 149 1349 158 HOH HOH . 
D 4 HOH A 150 1350 155 HOH HOH . 
D 4 HOH A 151 1351 181 HOH HOH . 
D 4 HOH A 152 1352 191 HOH HOH . 
D 4 HOH A 153 1353 164 HOH HOH . 
D 4 HOH A 154 1354 107 HOH HOH . 
D 4 HOH A 155 1355 118 HOH HOH . 
D 4 HOH A 156 1356 179 HOH HOH . 
D 4 HOH A 157 1357 147 HOH HOH . 
D 4 HOH A 158 1358 81 HOH HOH . 
D 4 HOH A 159 1359 15 HOH HOH . 
D 4 HOH A 160 1360 103 HOH HOH . 
D 4 HOH A 161 1361 117 HOH HOH . 
D 4 HOH A 162 1362 176 HOH HOH . 
D 4 HOH A 163 1363 84 HOH HOH . 
D 4 HOH A 164 1364 198 HOH HOH . 
D 4 HOH A 165 1365 120 HOH HOH . 
D 4 HOH A 166 1366 189 HOH HOH . 
D 4 HOH A 167 1367 111 HOH HOH . 
D 4 HOH A 168 1368 95 HOH HOH . 
D 4 HOH A 169 1369 149 HOH HOH . 
D 4 HOH A 170 1370 159 HOH HOH . 
D 4 HOH A 171 1371 121 HOH HOH . 
D 4 HOH A 172 1372 22 HOH HOH . 
D 4 HOH A 173 1373 87 HOH HOH . 
D 4 HOH A 174 1374 173 HOH HOH . 
D 4 HOH A 175 1375 59 HOH HOH . 
D 4 HOH A 176 1376 166 HOH HOH . 
D 4 HOH A 177 1377 119 HOH HOH . 
D 4 HOH A 178 1378 165 HOH HOH . 
D 4 HOH A 179 1379 56 HOH HOH . 
D 4 HOH A 180 1380 143 HOH HOH . 
D 4 HOH A 181 1381 136 HOH HOH . 
D 4 HOH A 182 1382 134 HOH HOH . 
D 4 HOH A 183 1383 32 HOH HOH . 
D 4 HOH A 184 1384 80 HOH HOH . 
D 4 HOH A 185 1385 58 HOH HOH . 
D 4 HOH A 186 1386 57 HOH HOH . 
D 4 HOH A 187 1387 139 HOH HOH . 
D 4 HOH A 188 1388 152 HOH HOH . 
D 4 HOH A 189 1389 142 HOH HOH . 
D 4 HOH A 190 1390 153 HOH HOH . 
D 4 HOH A 191 1391 146 HOH HOH . 
D 4 HOH A 192 1392 65 HOH HOH . 
D 4 HOH A 193 1393 77 HOH HOH . 
D 4 HOH A 194 1394 186 HOH HOH . 
D 4 HOH A 195 1395 170 HOH HOH . 
D 4 HOH A 196 1396 169 HOH HOH . 
D 4 HOH A 197 1397 151 HOH HOH . 
D 4 HOH A 198 1398 201 HOH HOH . 
D 4 HOH A 199 1399 148 HOH HOH . 
D 4 HOH A 200 1400 141 HOH HOH . 
D 4 HOH A 201 1401 74 HOH HOH . 
D 4 HOH A 202 1402 86 HOH HOH . 
D 4 HOH A 203 1403 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GAR . . . B 2 -34.301 16.805 15.052 0.82 16.56 ? C1 GAR 1101 A 1 
HETATM 2 O O6 GAR . . . B 2 -34.644 15.76 14.131 0.82 18.21 ? O6 GAR 1101 A 1 
HETATM 3 C C2 GAR . . . B 2 -33.325 16.262 16.068 0.82 15.92 ? C2 GAR 1101 A 1 
HETATM 4 O O8 GAR . . . B 2 -33.607 14.923 16.503 0.82 15.28 ? O8 GAR 1101 A 1 
HETATM 5 C C3 GAR . . . B 2 -32.002 16.357 15.324 0.82 15.58 ? C3 GAR 1101 A 1 
HETATM 6 O O4 GAR . . . B 2 -32.107 17.614 14.66 0.82 15.77 ? O4 GAR 1101 A 1 
HETATM 7 C C5 GAR . . . B 2 -33.481 17.867 14.334 0.82 13.37 ? C5 GAR 1101 A 1 
HETATM 8 C C10 GAR . . . B 2 -33.869 19.254 14.822 0.82 14.92 ? C10 GAR 1101 A 1 
HETATM 9 O O12 GAR . . . B 2 -35.165 19.607 14.347 0.82 15.35 ? O12 GAR 1101 A 1 
HETATM 10 N N19 GAR . . . B 2 -30.887 16.322 16.234 0.82 15.93 ? N19 GAR 1101 A 1 
HETATM 11 C C21 GAR . . . B 2 -29.746 15.714 15.922 0.82 18.84 ? C21 GAR 1101 A 1 
HETATM 12 O O22 GAR . . . B 2 -29.525 15.245 14.811 0.82 20.7 ? O22 GAR 1101 A 1 
HETATM 13 C C23 GAR . . . B 2 -28.72 15.651 17.032 0.82 21.35 ? C23 GAR 1101 A 1 
HETATM 14 N N24 GAR . . . B 2 -27.466 15.045 16.605 0.82 22.14 ? N24 GAR 1101 A 1 
HETATM 15 P P15 GAR . . . B 2 -35.967 20.855 14.993 0.82 14.44 ? P15 GAR 1101 A 1 
HETATM 16 O O16 GAR . . . B 2 -37.175 20.979 14.094 0.82 14.16 ? O16 GAR 1101 A 1 
HETATM 17 O O17 GAR . . . B 2 -34.993 22.017 14.934 0.82 15.77 ? O17 GAR 1101 A 1 
HETATM 18 O O18 GAR . . . B 2 -36.282 20.431 16.401 0.82 12.66 ? O18 GAR 1101 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           18 
#