data_4ZZ0 # _model_server_result.job_id A3kXImT1eFmISDbFfC0uCQ _model_server_result.datetime_utc '2024-11-24 01:07:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 4ZZ0 # _exptl.entry_id 4ZZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.448 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S)-2-(8-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)octanamido)pentanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZZ0 _cell.length_a 75.24 _cell.length_b 75.24 _cell.length_c 100.409 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H27 N5 O6' _chem_comp.formula_weight 421.448 _chem_comp.id 3YE _chem_comp.mon_nstd_flag . _chem_comp.name '(S)-2-(8-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)octanamido)pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C23 3YE doub 1 n n O25 C23 3YE sing 2 n n C23 C22 3YE sing 3 n n O18 C17 3YE doub 4 n n C22 C21 3YE sing 5 n n C12 C17 3YE sing 6 n n C12 C13 3YE sing 7 n n C17 N19 3YE sing 8 n n C21 C20 3YE sing 9 n n O28 C26 3YE doub 10 n n N19 C20 3YE sing 11 n n C13 C14 3YE sing 12 n n C20 C26 3YE sing 13 n n C26 O27 3YE sing 14 n n C14 C15 3YE sing 15 n n C15 C16 3YE sing 16 n n C16 C30 3YE sing 17 n n C30 C29 3YE sing 18 n n C29 C6 3YE sing 19 n n C6 N5 3YE sing 20 n y C6 C7 3YE doub 21 n y N5 C9 3YE sing 22 n y C7 C8 3YE sing 23 n y C9 C8 3YE doub 24 n y C9 N1 3YE sing 25 n n C8 C4 3YE sing 26 n n N1 C2 3YE doub 27 n n C4 O10 3YE doub 28 n n C4 N3 3YE sing 29 n n C2 N3 3YE sing 30 n n C2 N11 3YE sing 31 n n N3 H1 3YE sing 32 n n N5 H2 3YE sing 33 n n C7 H3 3YE sing 34 n n N11 H4 3YE sing 35 n n N11 H5 3YE sing 36 n n C12 H6 3YE sing 37 n n C12 H7 3YE sing 38 n n C13 H8 3YE sing 39 n n C13 H9 3YE sing 40 n n C14 H10 3YE sing 41 n n C14 H11 3YE sing 42 n n N19 H12 3YE sing 43 n n C20 H13 3YE sing 44 n n C21 H14 3YE sing 45 n n C21 H15 3YE sing 46 n n C22 H16 3YE sing 47 n n C22 H17 3YE sing 48 n n O25 H18 3YE sing 49 n n O27 H19 3YE sing 50 n n C29 H20 3YE sing 51 n n C29 H21 3YE sing 52 n n C30 H22 3YE sing 53 n n C30 H23 3YE sing 54 n n C16 H24 3YE sing 55 n n C16 H25 3YE sing 56 n n C15 H26 3YE sing 57 n n C15 H27 3YE sing 58 n n # _atom_sites.entry_id 4ZZ0 _atom_sites.fract_transf_matrix[1][1] 0.013291 _atom_sites.fract_transf_matrix[1][2] 0.007673 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1016 GAR GAR . C 3 3YE A 1 1102 1017 3YE 6GD . D 4 HOH A 1 1201 151 HOH HOH . D 4 HOH A 2 1202 181 HOH HOH . D 4 HOH A 3 1203 126 HOH HOH . D 4 HOH A 4 1204 60 HOH HOH . D 4 HOH A 5 1205 76 HOH HOH . D 4 HOH A 6 1206 95 HOH HOH . D 4 HOH A 7 1207 164 HOH HOH . D 4 HOH A 8 1208 28 HOH HOH . D 4 HOH A 9 1209 86 HOH HOH . D 4 HOH A 10 1210 32 HOH HOH . D 4 HOH A 11 1211 179 HOH HOH . D 4 HOH A 12 1212 27 HOH HOH . D 4 HOH A 13 1213 132 HOH HOH . D 4 HOH A 14 1214 36 HOH HOH . D 4 HOH A 15 1215 48 HOH HOH . D 4 HOH A 16 1216 97 HOH HOH . D 4 HOH A 17 1217 171 HOH HOH . D 4 HOH A 18 1218 128 HOH HOH . D 4 HOH A 19 1219 73 HOH HOH . D 4 HOH A 20 1220 8 HOH HOH . D 4 HOH A 21 1221 78 HOH HOH . D 4 HOH A 22 1222 105 HOH HOH . D 4 HOH A 23 1223 34 HOH HOH . D 4 HOH A 24 1224 154 HOH HOH . D 4 HOH A 25 1225 7 HOH HOH . D 4 HOH A 26 1226 5 HOH HOH . D 4 HOH A 27 1227 183 HOH HOH . D 4 HOH A 28 1228 156 HOH HOH . D 4 HOH A 29 1229 93 HOH HOH . D 4 HOH A 30 1230 125 HOH HOH . D 4 HOH A 31 1231 14 HOH HOH . D 4 HOH A 32 1232 51 HOH HOH . D 4 HOH A 33 1233 57 HOH HOH . D 4 HOH A 34 1234 56 HOH HOH . D 4 HOH A 35 1235 162 HOH HOH . D 4 HOH A 36 1236 110 HOH HOH . D 4 HOH A 37 1237 3 HOH HOH . D 4 HOH A 38 1238 155 HOH HOH . D 4 HOH A 39 1239 45 HOH HOH . D 4 HOH A 40 1240 129 HOH HOH . D 4 HOH A 41 1241 15 HOH HOH . D 4 HOH A 42 1242 172 HOH HOH . D 4 HOH A 43 1243 19 HOH HOH . D 4 HOH A 44 1244 66 HOH HOH . D 4 HOH A 45 1245 10 HOH HOH . D 4 HOH A 46 1246 53 HOH HOH . D 4 HOH A 47 1247 12 HOH HOH . D 4 HOH A 48 1248 31 HOH HOH . D 4 HOH A 49 1249 26 HOH HOH . D 4 HOH A 50 1250 17 HOH HOH . D 4 HOH A 51 1251 190 HOH HOH . D 4 HOH A 52 1252 29 HOH HOH . D 4 HOH A 53 1253 121 HOH HOH . D 4 HOH A 54 1254 107 HOH HOH . D 4 HOH A 55 1255 11 HOH HOH . D 4 HOH A 56 1256 84 HOH HOH . D 4 HOH A 57 1257 1 HOH HOH . D 4 HOH A 58 1258 98 HOH HOH . D 4 HOH A 59 1259 24 HOH HOH . D 4 HOH A 60 1260 152 HOH HOH . D 4 HOH A 61 1261 83 HOH HOH . D 4 HOH A 62 1262 100 HOH HOH . D 4 HOH A 63 1263 22 HOH HOH . D 4 HOH A 64 1264 63 HOH HOH . D 4 HOH A 65 1265 65 HOH HOH . D 4 HOH A 66 1266 55 HOH HOH . D 4 HOH A 67 1267 158 HOH HOH . D 4 HOH A 68 1268 30 HOH HOH . D 4 HOH A 69 1269 39 HOH HOH . D 4 HOH A 70 1270 180 HOH HOH . D 4 HOH A 71 1271 33 HOH HOH . D 4 HOH A 72 1272 41 HOH HOH . D 4 HOH A 73 1273 85 HOH HOH . D 4 HOH A 74 1274 37 HOH HOH . D 4 HOH A 75 1275 6 HOH HOH . D 4 HOH A 76 1276 157 HOH HOH . D 4 HOH A 77 1277 160 HOH HOH . D 4 HOH A 78 1278 74 HOH HOH . D 4 HOH A 79 1279 2 HOH HOH . D 4 HOH A 80 1280 68 HOH HOH . D 4 HOH A 81 1281 20 HOH HOH . D 4 HOH A 82 1282 193 HOH HOH . D 4 HOH A 83 1283 54 HOH HOH . D 4 HOH A 84 1284 40 HOH HOH . D 4 HOH A 85 1285 44 HOH HOH . D 4 HOH A 86 1286 178 HOH HOH . D 4 HOH A 87 1287 69 HOH HOH . D 4 HOH A 88 1288 168 HOH HOH . D 4 HOH A 89 1289 127 HOH HOH . D 4 HOH A 90 1290 123 HOH HOH . D 4 HOH A 91 1291 9 HOH HOH . D 4 HOH A 92 1292 77 HOH HOH . D 4 HOH A 93 1293 46 HOH HOH . D 4 HOH A 94 1294 23 HOH HOH . D 4 HOH A 95 1295 59 HOH HOH . D 4 HOH A 96 1296 38 HOH HOH . D 4 HOH A 97 1297 131 HOH HOH . D 4 HOH A 98 1298 92 HOH HOH . D 4 HOH A 99 1299 61 HOH HOH . D 4 HOH A 100 1300 150 HOH HOH . D 4 HOH A 101 1301 25 HOH HOH . D 4 HOH A 102 1302 124 HOH HOH . D 4 HOH A 103 1303 112 HOH HOH . D 4 HOH A 104 1304 49 HOH HOH . D 4 HOH A 105 1305 13 HOH HOH . D 4 HOH A 106 1306 58 HOH HOH . D 4 HOH A 107 1307 99 HOH HOH . D 4 HOH A 108 1308 122 HOH HOH . D 4 HOH A 109 1309 18 HOH HOH . D 4 HOH A 110 1310 144 HOH HOH . D 4 HOH A 111 1311 114 HOH HOH . D 4 HOH A 112 1312 4 HOH HOH . D 4 HOH A 113 1313 91 HOH HOH . D 4 HOH A 114 1314 62 HOH HOH . D 4 HOH A 115 1315 87 HOH HOH . D 4 HOH A 116 1316 70 HOH HOH . D 4 HOH A 117 1317 188 HOH HOH . D 4 HOH A 118 1318 163 HOH HOH . D 4 HOH A 119 1319 102 HOH HOH . D 4 HOH A 120 1320 16 HOH HOH . D 4 HOH A 121 1321 148 HOH HOH . D 4 HOH A 122 1322 67 HOH HOH . D 4 HOH A 123 1323 82 HOH HOH . D 4 HOH A 124 1324 130 HOH HOH . D 4 HOH A 125 1325 71 HOH HOH . D 4 HOH A 126 1326 47 HOH HOH . D 4 HOH A 127 1327 90 HOH HOH . D 4 HOH A 128 1328 170 HOH HOH . D 4 HOH A 129 1329 136 HOH HOH . D 4 HOH A 130 1330 101 HOH HOH . D 4 HOH A 131 1331 187 HOH HOH . D 4 HOH A 132 1332 94 HOH HOH . D 4 HOH A 133 1333 166 HOH HOH . D 4 HOH A 134 1334 146 HOH HOH . D 4 HOH A 135 1335 72 HOH HOH . D 4 HOH A 136 1336 134 HOH HOH . D 4 HOH A 137 1337 133 HOH HOH . D 4 HOH A 138 1338 194 HOH HOH . D 4 HOH A 139 1339 138 HOH HOH . D 4 HOH A 140 1340 167 HOH HOH . D 4 HOH A 141 1341 174 HOH HOH . D 4 HOH A 142 1342 186 HOH HOH . D 4 HOH A 143 1343 147 HOH HOH . D 4 HOH A 144 1344 182 HOH HOH . D 4 HOH A 145 1345 195 HOH HOH . D 4 HOH A 146 1346 111 HOH HOH . D 4 HOH A 147 1347 117 HOH HOH . D 4 HOH A 148 1348 189 HOH HOH . D 4 HOH A 149 1349 79 HOH HOH . D 4 HOH A 150 1350 115 HOH HOH . D 4 HOH A 151 1351 116 HOH HOH . D 4 HOH A 152 1352 139 HOH HOH . D 4 HOH A 153 1353 35 HOH HOH . D 4 HOH A 154 1354 142 HOH HOH . D 4 HOH A 155 1355 161 HOH HOH . D 4 HOH A 156 1356 184 HOH HOH . D 4 HOH A 157 1357 113 HOH HOH . D 4 HOH A 158 1358 176 HOH HOH . D 4 HOH A 159 1359 145 HOH HOH . D 4 HOH A 160 1360 109 HOH HOH . D 4 HOH A 161 1361 173 HOH HOH . D 4 HOH A 162 1362 149 HOH HOH . D 4 HOH A 163 1363 104 HOH HOH . D 4 HOH A 164 1364 88 HOH HOH . D 4 HOH A 165 1365 135 HOH HOH . D 4 HOH A 166 1366 43 HOH HOH . D 4 HOH A 167 1367 21 HOH HOH . D 4 HOH A 168 1368 89 HOH HOH . D 4 HOH A 169 1369 64 HOH HOH . D 4 HOH A 170 1370 52 HOH HOH . D 4 HOH A 171 1371 196 HOH HOH . D 4 HOH A 172 1372 143 HOH HOH . D 4 HOH A 173 1373 42 HOH HOH . D 4 HOH A 174 1374 81 HOH HOH . D 4 HOH A 175 1375 169 HOH HOH . D 4 HOH A 176 1376 80 HOH HOH . D 4 HOH A 177 1377 165 HOH HOH . D 4 HOH A 178 1378 50 HOH HOH . D 4 HOH A 179 1379 175 HOH HOH . D 4 HOH A 180 1380 140 HOH HOH . D 4 HOH A 181 1381 137 HOH HOH . D 4 HOH A 182 1382 153 HOH HOH . D 4 HOH A 183 1383 103 HOH HOH . D 4 HOH A 184 1384 75 HOH HOH . D 4 HOH A 185 1385 141 HOH HOH . D 4 HOH A 186 1386 108 HOH HOH . D 4 HOH A 187 1387 191 HOH HOH . D 4 HOH A 188 1388 120 HOH HOH . D 4 HOH A 189 1389 159 HOH HOH . D 4 HOH A 190 1390 106 HOH HOH . D 4 HOH A 191 1391 185 HOH HOH . D 4 HOH A 192 1392 118 HOH HOH . D 4 HOH A 193 1393 119 HOH HOH . D 4 HOH A 194 1394 96 HOH HOH . D 4 HOH A 195 1395 192 HOH HOH . D 4 HOH A 196 1396 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 3YE . . . C 3 -22.213 16.911 -26.485 1 15.42 ? N1 3YE 1102 A 1 HETATM 2 C C2 3YE . . . C 3 -21.798 15.874 -25.685 1 14.52 ? C2 3YE 1102 A 1 HETATM 3 N N3 3YE . . . C 3 -22.537 14.709 -25.607 1 15.38 ? N3 3YE 1102 A 1 HETATM 4 C C4 3YE . . . C 3 -23.693 14.565 -26.354 1 15.56 ? C4 3YE 1102 A 1 HETATM 5 N N5 3YE . . . C 3 -23.989 17.672 -28.116 1 15.02 ? N5 3YE 1102 A 1 HETATM 6 C C6 3YE . . . C 3 -25.065 17.053 -28.584 1 17.71 ? C6 3YE 1102 A 1 HETATM 7 C C7 3YE . . . C 3 -25.176 15.867 -28.051 1 15.83 ? C7 3YE 1102 A 1 HETATM 8 C C8 3YE . . . C 3 -24.136 15.613 -27.187 1 14.45 ? C8 3YE 1102 A 1 HETATM 9 C C9 3YE . . . C 3 -23.329 16.793 -27.218 1 13.18 ? C9 3YE 1102 A 1 HETATM 10 O O10 3YE . . . C 3 -24.288 13.509 -26.237 1 16.41 ? O10 3YE 1102 A 1 HETATM 11 N N11 3YE . . . C 3 -20.625 16.009 -24.921 1 17.65 ? N11 3YE 1102 A 1 HETATM 12 C C12 3YE . . . C 3 -21.954 17.151 -35.711 1 66.9 ? C12 3YE 1102 A 1 HETATM 13 C C13 3YE . . . C 3 -22.244 16.452 -34.365 1 61.22 ? C13 3YE 1102 A 1 HETATM 14 C C14 3YE . . . C 3 -23.084 17.422 -33.507 1 56.81 ? C14 3YE 1102 A 1 HETATM 15 C C17 3YE . . . C 3 -20.873 18.225 -35.521 1 72.84 ? C17 3YE 1102 A 1 HETATM 16 O O18 3YE . . . C 3 -20.842 19.182 -36.296 1 75.13 ? O18 3YE 1102 A 1 HETATM 17 N N19 3YE . . . C 3 -19.922 18.074 -34.429 1 74.81 ? N19 3YE 1102 A 1 HETATM 18 C C20 3YE . . . C 3 -18.851 19.011 -34.132 1 74.85 ? C20 3YE 1102 A 1 HETATM 19 C C21 3YE . . . C 3 -17.937 19.179 -35.329 1 80.67 ? C21 3YE 1102 A 1 HETATM 20 C C22 3YE . . . C 3 -17.529 17.806 -35.848 1 85.49 ? C22 3YE 1102 A 1 HETATM 21 C C23 3YE . . . C 3 -17.69 17.753 -37.345 1 88.41 ? C23 3YE 1102 A 1 HETATM 22 O O24 3YE . . . C 3 -17.979 18.809 -37.992 1 90.37 ? O24 3YE 1102 A 1 HETATM 23 O O25 3YE . . . C 3 -17.534 16.649 -37.966 1 88.02 ? O25 3YE 1102 A 1 HETATM 24 C C26 3YE . . . C 3 -19.409 20.336 -33.671 1 68.6 ? C26 3YE 1102 A 1 HETATM 25 O O27 3YE . . . C 3 -19.205 20.726 -32.477 1 59.5 ? O27 3YE 1102 A 1 HETATM 26 O O28 3YE . . . C 3 -20.077 21.055 -34.458 1 69.84 ? O28 3YE 1102 A 1 HETATM 27 C C29 3YE . . . C 3 -26.053 17.669 -29.581 1 19.7 ? C29 3YE 1102 A 1 HETATM 28 C C30 3YE . . . C 3 -25.855 17.059 -30.938 1 20.7 ? C30 3YE 1102 A 1 HETATM 29 C C16 3YE . . . C 3 -24.49 17.439 -31.446 1 22.87 ? C16 3YE 1102 A 1 HETATM 30 C C15 3YE . . . C 3 -24.17 16.633 -32.721 1 30.11 ? C15 3YE 1102 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #