data_4ZZ3 # _model_server_result.job_id 8kXCPJgR6ZFw2XmK14HKpw _model_server_result.datetime_utc '2024-10-10 15:25:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 4ZZ3 # _exptl.entry_id 4ZZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.16 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCINAMIDE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZZ3 _cell.length_a 74.983 _cell.length_b 74.983 _cell.length_c 100.934 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H13 N2 O8 P -2' _chem_comp.formula_weight 284.16 _chem_comp.id GAR _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCINAMIDE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 GAR sing 135 n n C1 C2 GAR sing 136 n n C1 C5 GAR sing 137 n n C1 H1 GAR sing 138 n n O6 HO6 GAR sing 139 n n C2 O8 GAR sing 140 n n C2 C3 GAR sing 141 n n C2 H2 GAR sing 142 n n O8 HO8 GAR sing 143 n n C3 O4 GAR sing 144 n n C3 N19 GAR sing 145 n n C3 H3 GAR sing 146 n n O4 C5 GAR sing 147 n n C5 C10 GAR sing 148 n n C5 H5 GAR sing 149 n n C10 O12 GAR sing 150 n n C10 H101 GAR sing 151 n n C10 H102 GAR sing 152 n n O12 P15 GAR sing 153 n n N19 C21 GAR sing 154 n n N19 H19 GAR sing 155 n n C21 O22 GAR doub 156 n n C21 C23 GAR sing 157 n n C23 N24 GAR sing 158 n n C23 H231 GAR sing 159 n n C23 H232 GAR sing 160 n n N24 H241 GAR sing 161 n n N24 H242 GAR sing 162 n n P15 O16 GAR doub 163 n n P15 O17 GAR sing 164 n n P15 O18 GAR sing 165 n n # _atom_sites.entry_id 4ZZ3 _atom_sites.fract_transf_matrix[1][1] 0.013336 _atom_sites.fract_transf_matrix[1][2] 0.0077 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4DW A 1 1101 1010 4DW LYA . C 3 GAR A 1 1102 1011 GAR GAR . D 4 HOH A 1 1201 6 HOH HOH . D 4 HOH A 2 1202 26 HOH HOH . D 4 HOH A 3 1203 11 HOH HOH . D 4 HOH A 4 1204 21 HOH HOH . D 4 HOH A 5 1205 12 HOH HOH . D 4 HOH A 6 1206 10 HOH HOH . D 4 HOH A 7 1207 16 HOH HOH . D 4 HOH A 8 1208 14 HOH HOH . D 4 HOH A 9 1209 2 HOH HOH . D 4 HOH A 10 1210 19 HOH HOH . D 4 HOH A 11 1211 13 HOH HOH . D 4 HOH A 12 1212 25 HOH HOH . D 4 HOH A 13 1213 9 HOH HOH . D 4 HOH A 14 1214 27 HOH HOH . D 4 HOH A 15 1215 18 HOH HOH . D 4 HOH A 16 1216 20 HOH HOH . D 4 HOH A 17 1217 3 HOH HOH . D 4 HOH A 18 1218 17 HOH HOH . D 4 HOH A 19 1219 1 HOH HOH . D 4 HOH A 20 1220 4 HOH HOH . D 4 HOH A 21 1221 15 HOH HOH . D 4 HOH A 22 1222 7 HOH HOH . D 4 HOH A 23 1223 8 HOH HOH . D 4 HOH A 24 1224 5 HOH HOH . D 4 HOH A 25 1225 23 HOH HOH . D 4 HOH A 26 1226 24 HOH HOH . D 4 HOH A 27 1227 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAR . . . C 3 71.542 47.741 14.739 0.7 52.57 ? C1 GAR 1102 A 1 HETATM 2 O O6 GAR . . . C 3 72.304 48.518 13.811 0.7 47.49 ? O6 GAR 1102 A 1 HETATM 3 C C2 GAR . . . C 3 70.468 48.594 15.381 0.7 55.36 ? C2 GAR 1102 A 1 HETATM 4 O O8 GAR . . . C 3 70.69 49.98 15.116 0.7 53.66 ? O8 GAR 1102 A 1 HETATM 5 C C3 GAR . . . C 3 69.173 48.127 14.741 0.7 60.1 ? C3 GAR 1102 A 1 HETATM 6 O O4 GAR . . . C 3 69.408 46.804 14.257 0.7 60.95 ? O4 GAR 1102 A 1 HETATM 7 C C5 GAR . . . C 3 70.804 46.632 14.005 0.7 56.22 ? C5 GAR 1102 A 1 HETATM 8 C C10 GAR . . . C 3 71.268 45.267 14.486 0.7 54.08 ? C10 GAR 1102 A 1 HETATM 9 O O12 GAR . . . C 3 72.644 45.127 14.151 0.7 51.37 ? O12 GAR 1102 A 1 HETATM 10 N N19 GAR . . . C 3 68.088 48.14 15.698 0.7 58.94 ? N19 GAR 1102 A 1 HETATM 11 C C21 GAR . . . C 3 67.013 48.888 15.478 0.7 53.44 ? C21 GAR 1102 A 1 HETATM 12 O O22 GAR . . . C 3 66.764 49.388 14.392 0.7 48.62 ? O22 GAR 1102 A 1 HETATM 13 C C23 GAR . . . C 3 66.098 49.1 16.657 0.7 50.62 ? C23 GAR 1102 A 1 HETATM 14 N N24 GAR . . . C 3 65.665 47.835 17.211 0.7 49.89 ? N24 GAR 1102 A 1 HETATM 15 P P15 GAR . . . C 3 73.42 43.756 14.458 0.7 49.42 ? P15 GAR 1102 A 1 HETATM 16 O O16 GAR . . . C 3 74.567 43.777 13.479 0.7 46.31 ? O16 GAR 1102 A 1 HETATM 17 O O17 GAR . . . C 3 72.384 42.688 14.197 0.7 50.96 ? O17 GAR 1102 A 1 HETATM 18 O O18 GAR . . . C 3 73.837 43.879 15.905 0.7 45.59 ? O18 GAR 1102 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #