data_4ZZJ
#
_model_server_result.job_id            XcKQ1sVqptSgFwRHxSFc1g 
_model_server_result.datetime_utc      '2024-11-23 11:59:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zzj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    4ZZJ 
#
_exptl.entry_id    4ZZJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              662.46 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZZJ 
_cell.length_a            94.51 
_cell.length_b            94.51 
_cell.length_c            356.84 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZZJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1 
A,B,C,D,E,F,G,H,I 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 94.51 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LYS 3 B LYS 3 1_555 B N ALY 4 B ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C ALY 4 B ALY 4 1_555 B N LEU 5 B LEU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C LEU 5 B LEU 5 1_555 B N NLE 6 B NLE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C NLE 6 B NLE 6 1_555 B N PHE 7 B PHE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A SG CYS 189 A CYS 371 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc2 A SG CYS 192 A CYS 374 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc3 A SG CYS 213 A CYS 395 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc4 A SG CYS 216 A CYS 398 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'C22 H30 N7 O13 P2 1' 
_chem_comp.formula_weight    662.46 
_chem_comp.id                CNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3B C3B CNA sing 160 n n 
O2B C2B CNA sing 161 n n 
C3B C2B CNA sing 162 n n 
C3B C4B CNA sing 163 n n 
C2B C1B CNA sing 164 n n 
N3A C2A CNA doub 165 n y 
N3A C4A CNA sing 166 n y 
C2A N1A CNA sing 167 n y 
C1B N9A CNA sing 168 n n 
C1B O4B CNA sing 169 n n 
C4B O4B CNA sing 170 n n 
C4B C5B CNA sing 171 n n 
C4A N9A CNA sing 172 n y 
C4A C5A CNA doub 173 n y 
N9A C8A CNA sing 174 n y 
N1A C6A CNA doub 175 n y 
O2A PA CNA doub 176 n n 
O5B C5B CNA sing 177 n n 
O5B PA CNA sing 178 n n 
C5A C6A CNA sing 179 n y 
C5A N7A CNA sing 180 n y 
C6A N6A CNA sing 181 n n 
C8A N7A CNA doub 182 n y 
PA O3 CNA sing 183 n n 
PA O1A CNA sing 184 n n 
O3 PN CNA sing 185 n n 
O1N PN CNA doub 186 n n 
PN O2N CNA sing 187 n n 
PN O5D CNA sing 188 n n 
C5D O5D CNA sing 189 n n 
C5D C4D CNA sing 190 n n 
C3D O3D CNA sing 191 n n 
C3D C4D CNA sing 192 n n 
C3D C2D CNA sing 193 n n 
C4D C4' CNA sing 194 n n 
O2D C2D CNA sing 195 n n 
C2D C1D CNA sing 196 n n 
C4' C1D CNA sing 197 n n 
C1D N1N CNA sing 198 n n 
N1N C6N CNA doub 199 n y 
N1N C2N CNA sing 200 n y 
C6N C5N CNA sing 201 n y 
C2N C3N CNA doub 202 n y 
C5N C4N CNA doub 203 n y 
C3N C4N CNA sing 204 n y 
C3N C7N CNA sing 205 n n 
N7N C7N CNA sing 206 n n 
C7N O7N CNA doub 207 n n 
O1A H1 CNA sing 208 n n 
C5B H2 CNA sing 209 n n 
C5B H3 CNA sing 210 n n 
C4B H4 CNA sing 211 n n 
C3B H5 CNA sing 212 n n 
O3B H6 CNA sing 213 n n 
C2B H7 CNA sing 214 n n 
O2B H8 CNA sing 215 n n 
C1B H9 CNA sing 216 n n 
C8A H10 CNA sing 217 n n 
N6A H11 CNA sing 218 n n 
N6A H12 CNA sing 219 n n 
C2A H13 CNA sing 220 n n 
O2N H14 CNA sing 221 n n 
C5D H15 CNA sing 222 n n 
C5D H16 CNA sing 223 n n 
C4D H17 CNA sing 224 n n 
C4' H18 CNA sing 225 n n 
C4' H19 CNA sing 226 n n 
C3D H20 CNA sing 227 n n 
O3D H21 CNA sing 228 n n 
C2D H22 CNA sing 229 n n 
O2D H23 CNA sing 230 n n 
C1D H24 CNA sing 231 n n 
C2N H25 CNA sing 232 n n 
N7N H26 CNA sing 233 n n 
N7N H27 CNA sing 234 n n 
C4N H28 CNA sing 235 n n 
C5N H29 CNA sing 236 n n 
C6N H30 CNA sing 237 n n 
#
_atom_sites.entry_id                     4ZZJ 
_atom_sites.fract_transf_matrix[1][1]    0.010581 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010581 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 701 1 ZN ZN . 
D 4 CNA A 1 702 1 CNA CNA . 
E 5 4TQ A 1 703 1 4TQ DRG . 
F 6 GOL A 1 704 1 GOL GOL . 
G 6 GOL A 1 705 2 GOL GOL . 
H 7 HOH A 1 801 42 HOH HOH . 
H 7 HOH A 2 802 39 HOH HOH . 
H 7 HOH A 3 803 3 HOH HOH . 
H 7 HOH A 4 804 10 HOH HOH . 
H 7 HOH A 5 805 26 HOH HOH . 
H 7 HOH A 6 806 31 HOH HOH . 
H 7 HOH A 7 807 17 HOH HOH . 
H 7 HOH A 8 808 30 HOH HOH . 
H 7 HOH A 9 809 38 HOH HOH . 
H 7 HOH A 10 810 41 HOH HOH . 
H 7 HOH A 11 811 23 HOH HOH . 
H 7 HOH A 12 812 27 HOH HOH . 
H 7 HOH A 13 813 43 HOH HOH . 
H 7 HOH A 14 814 22 HOH HOH . 
H 7 HOH A 15 815 25 HOH HOH . 
H 7 HOH A 16 816 5 HOH HOH . 
H 7 HOH A 17 817 32 HOH HOH . 
H 7 HOH A 18 818 35 HOH HOH . 
H 7 HOH A 19 819 12 HOH HOH . 
H 7 HOH A 20 820 24 HOH HOH . 
H 7 HOH A 21 821 4 HOH HOH . 
H 7 HOH A 22 822 1 HOH HOH . 
H 7 HOH A 23 823 11 HOH HOH . 
H 7 HOH A 24 824 33 HOH HOH . 
H 7 HOH A 25 825 37 HOH HOH . 
H 7 HOH A 26 826 34 HOH HOH . 
H 7 HOH A 27 827 44 HOH HOH . 
H 7 HOH A 28 828 36 HOH HOH . 
H 7 HOH A 29 829 15 HOH HOH . 
H 7 HOH A 30 830 14 HOH HOH . 
H 7 HOH A 31 831 7 HOH HOH . 
H 7 HOH A 32 832 21 HOH HOH . 
H 7 HOH A 33 833 28 HOH HOH . 
H 7 HOH A 34 834 13 HOH HOH . 
H 7 HOH A 35 835 2 HOH HOH . 
H 7 HOH A 36 836 16 HOH HOH . 
H 7 HOH A 37 837 6 HOH HOH . 
H 7 HOH A 38 838 20 HOH HOH . 
H 7 HOH A 39 839 19 HOH HOH . 
H 7 HOH A 40 840 40 HOH HOH . 
H 7 HOH A 41 841 29 HOH HOH . 
I 7 HOH B 1 101 18 HOH HOH . 
I 7 HOH B 2 102 9 HOH HOH . 
I 7 HOH B 3 103 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA CNA . . . D 4 13.752 60.673 21.52 1 58.93 ? PA CNA 702 A 1 
HETATM 2 O O1A CNA . . . D 4 12.92 59.319 21.169 1 69.31 ? O1A CNA 702 A 1 
HETATM 3 O O2A CNA . . . D 4 15.115 60.363 22.013 1 63.1 ? O2A CNA 702 A 1 
HETATM 4 O O5B CNA . . . D 4 13.727 61.577 20.206 1 61.47 ? O5B CNA 702 A 1 
HETATM 5 C C5B CNA . . . D 4 14.44 62.81 20.138 1 54.8 ? C5B CNA 702 A 1 
HETATM 6 C C4B CNA . . . D 4 14.209 63.41 18.751 1 55.84 ? C4B CNA 702 A 1 
HETATM 7 O O4B CNA . . . D 4 14.714 64.764 18.721 1 59.72 ? O4B CNA 702 A 1 
HETATM 8 C C3B CNA . . . D 4 15.008 62.602 17.736 1 63.37 ? C3B CNA 702 A 1 
HETATM 9 O O3B CNA . . . D 4 14.244 62.457 16.52 1 62.54 ? O3B CNA 702 A 1 
HETATM 10 C C2B CNA . . . D 4 16.254 63.446 17.512 1 65.9 ? C2B CNA 702 A 1 
HETATM 11 O O2B CNA . . . D 4 16.763 63.257 16.176 1 60.9 ? O2B CNA 702 A 1 
HETATM 12 C C1B CNA . . . D 4 15.717 64.852 17.675 1 64.4 ? C1B CNA 702 A 1 
HETATM 13 N N9A CNA . . . D 4 16.765 65.806 18.12 1 67.11 ? N9A CNA 702 A 1 
HETATM 14 C C8A CNA . . . D 4 17.81 65.562 18.909 1 68.64 ? C8A CNA 702 A 1 
HETATM 15 N N7A CNA . . . D 4 18.481 66.702 19.06 1 68.73 ? N7A CNA 702 A 1 
HETATM 16 C C5A CNA . . . D 4 17.852 67.653 18.37 1 65.87 ? C5A CNA 702 A 1 
HETATM 17 C C6A CNA . . . D 4 18.119 68.95 18.2 1 62.29 ? C6A CNA 702 A 1 
HETATM 18 N N6A CNA . . . D 4 19.203 69.418 18.813 1 54.7 ? N6A CNA 702 A 1 
HETATM 19 N N1A CNA . . . D 4 17.336 69.739 17.45 1 68.16 ? N1A CNA 702 A 1 
HETATM 20 C C2A CNA . . . D 4 16.212 69.184 16.829 1 69.23 ? C2A CNA 702 A 1 
HETATM 21 N N3A CNA . . . D 4 15.956 67.823 17.023 1 67.45 ? N3A CNA 702 A 1 
HETATM 22 C C4A CNA . . . D 4 16.784 67.096 17.791 1 68.16 ? C4A CNA 702 A 1 
HETATM 23 O O3 CNA . . . D 4 12.875 61.483 22.62 1 67.02 ? O3 CNA 702 A 1 
HETATM 24 P PN CNA . . . D 4 11.29 61.72 22.436 1 65.68 ? PN CNA 702 A 1 
HETATM 25 O O1N CNA . . . D 4 10.962 63.049 23.291 1 51 ? O1N CNA 702 A 1 
HETATM 26 O O2N CNA . . . D 4 10.822 61.827 21.026 1 65.06 ? O2N CNA 702 A 1 
HETATM 27 O O5D CNA . . . D 4 10.544 60.504 23.201 1 68.18 ? O5D CNA 702 A 1 
HETATM 28 C C5D CNA . . . D 4 10.165 60.614 24.568 1 58.05 ? C5D CNA 702 A 1 
HETATM 29 C C4D CNA . . . D 4 11.009 59.674 25.431 1 60.37 ? C4D CNA 702 A 1 
HETATM 30 C C4' CNA . . . D 4 12.428 60.224 25.627 1 58.12 ? C4' CNA 702 A 1 
HETATM 31 C C3D CNA . . . D 4 10.388 59.651 26.816 1 69.66 ? C3D CNA 702 A 1 
HETATM 32 O O3D CNA . . . D 4 10.486 58.324 27.344 1 69.91 ? O3D CNA 702 A 1 
HETATM 33 C C2D CNA . . . D 4 11.234 60.6 27.653 1 70.98 ? C2D CNA 702 A 1 
HETATM 34 O O2D CNA . . . D 4 11.105 60.264 29.047 1 67.48 ? O2D CNA 702 A 1 
HETATM 35 C C1D CNA . . . D 4 12.632 60.293 27.149 1 67.3 ? C1D CNA 702 A 1 
HETATM 36 N N1N CNA . . . D 4 13.637 61.333 27.522 1 64.29 ? N1N CNA 702 A 1 
HETATM 37 C C2N CNA . . . D 4 13.241 62.592 28.009 1 63.1 ? C2N CNA 702 A 1 
HETATM 38 C C3N CNA . . . D 4 14.206 63.546 28.34 1 63.9 ? C3N CNA 702 A 1 
HETATM 39 C C7N CNA . . . D 4 13.826 64.799 28.831 1 59.93 ? C7N CNA 702 A 1 
HETATM 40 O O7N CNA . . . D 4 12.702 64.992 29.285 1 57.44 ? O7N CNA 702 A 1 
HETATM 41 N N7N CNA . . . D 4 14.769 65.736 28.807 1 56.35 ? N7N CNA 702 A 1 
HETATM 42 C C4N CNA . . . D 4 15.558 63.248 28.175 1 63.79 ? C4N CNA 702 A 1 
HETATM 43 C C5N CNA . . . D 4 15.964 62.008 27.691 1 53.34 ? C5N CNA 702 A 1 
HETATM 44 C C6N CNA . . . D 4 15.007 61.053 27.367 1 52.77 ? C6N CNA 702 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           44 
#