data_4ZZJ
#
_model_server_result.job_id            K9g3wDqZk2YGfzSOnK5YGw 
_model_server_result.datetime_utc      '2024-11-23 11:42:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zzj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":704}' 
#
_entry.id    4ZZJ 
#
_exptl.entry_id    4ZZJ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZZJ 
_cell.length_a            94.51 
_cell.length_b            94.51 
_cell.length_c            356.84 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4ZZJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1 
A,B,C,D,E,F,G,H,I 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 94.51 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LYS 3 B LYS 3 1_555 B N ALY 4 B ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C ALY 4 B ALY 4 1_555 B N LEU 5 B LEU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C LEU 5 B LEU 5 1_555 B N NLE 6 B NLE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C NLE 6 B NLE 6 1_555 B N PHE 7 B PHE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A SG CYS 189 A CYS 371 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc2 A SG CYS 192 A CYS 374 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc3 A SG CYS 213 A CYS 395 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc4 A SG CYS 216 A CYS 398 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 297 n n 
C1 C2 GOL sing 298 n n 
C1 H11 GOL sing 299 n n 
C1 H12 GOL sing 300 n n 
O1 HO1 GOL sing 301 n n 
C2 O2 GOL sing 302 n n 
C2 C3 GOL sing 303 n n 
C2 H2 GOL sing 304 n n 
O2 HO2 GOL sing 305 n n 
C3 O3 GOL sing 306 n n 
C3 H31 GOL sing 307 n n 
C3 H32 GOL sing 308 n n 
O3 HO3 GOL sing 309 n n 
#
_atom_sites.entry_id                     4ZZJ 
_atom_sites.fract_transf_matrix[1][1]    0.010581 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010581 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 701 1 ZN ZN . 
D 4 CNA A 1 702 1 CNA CNA . 
E 5 4TQ A 1 703 1 4TQ DRG . 
F 6 GOL A 1 704 1 GOL GOL . 
G 6 GOL A 1 705 2 GOL GOL . 
H 7 HOH A 1 801 42 HOH HOH . 
H 7 HOH A 2 802 39 HOH HOH . 
H 7 HOH A 3 803 3 HOH HOH . 
H 7 HOH A 4 804 10 HOH HOH . 
H 7 HOH A 5 805 26 HOH HOH . 
H 7 HOH A 6 806 31 HOH HOH . 
H 7 HOH A 7 807 17 HOH HOH . 
H 7 HOH A 8 808 30 HOH HOH . 
H 7 HOH A 9 809 38 HOH HOH . 
H 7 HOH A 10 810 41 HOH HOH . 
H 7 HOH A 11 811 23 HOH HOH . 
H 7 HOH A 12 812 27 HOH HOH . 
H 7 HOH A 13 813 43 HOH HOH . 
H 7 HOH A 14 814 22 HOH HOH . 
H 7 HOH A 15 815 25 HOH HOH . 
H 7 HOH A 16 816 5 HOH HOH . 
H 7 HOH A 17 817 32 HOH HOH . 
H 7 HOH A 18 818 35 HOH HOH . 
H 7 HOH A 19 819 12 HOH HOH . 
H 7 HOH A 20 820 24 HOH HOH . 
H 7 HOH A 21 821 4 HOH HOH . 
H 7 HOH A 22 822 1 HOH HOH . 
H 7 HOH A 23 823 11 HOH HOH . 
H 7 HOH A 24 824 33 HOH HOH . 
H 7 HOH A 25 825 37 HOH HOH . 
H 7 HOH A 26 826 34 HOH HOH . 
H 7 HOH A 27 827 44 HOH HOH . 
H 7 HOH A 28 828 36 HOH HOH . 
H 7 HOH A 29 829 15 HOH HOH . 
H 7 HOH A 30 830 14 HOH HOH . 
H 7 HOH A 31 831 7 HOH HOH . 
H 7 HOH A 32 832 21 HOH HOH . 
H 7 HOH A 33 833 28 HOH HOH . 
H 7 HOH A 34 834 13 HOH HOH . 
H 7 HOH A 35 835 2 HOH HOH . 
H 7 HOH A 36 836 16 HOH HOH . 
H 7 HOH A 37 837 6 HOH HOH . 
H 7 HOH A 38 838 20 HOH HOH . 
H 7 HOH A 39 839 19 HOH HOH . 
H 7 HOH A 40 840 40 HOH HOH . 
H 7 HOH A 41 841 29 HOH HOH . 
I 7 HOH B 1 101 18 HOH HOH . 
I 7 HOH B 2 102 9 HOH HOH . 
I 7 HOH B 3 103 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 6 13.653 59.851 51.289 1 61.35 ? C1 GOL 704 A 1 
HETATM 2 O O1 GOL . . . F 6 14.731 60.363 50.537 1 64.87 ? O1 GOL 704 A 1 
HETATM 3 C C2 GOL . . . F 6 12.589 60.931 51.426 1 62.92 ? C2 GOL 704 A 1 
HETATM 4 O O2 GOL . . . F 6 12.939 61.798 52.477 1 73.52 ? O2 GOL 704 A 1 
HETATM 5 C C3 GOL . . . F 6 11.238 60.297 51.736 1 61.71 ? C3 GOL 704 A 1 
HETATM 6 O O3 GOL . . . F 6 11.162 60.013 53.113 1 67.84 ? O3 GOL 704 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           6 
#