data_521P # _model_server_result.job_id dUnq3m-oVNlI2xBq0OHfrw _model_server_result.datetime_utc '2024-12-23 06:45:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 521p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":167}' # _entry.id 521P # _exptl.entry_id 521P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 521P _cell.length_a 40.5 _cell.length_b 40.5 _cell.length_c 161.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 521P _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 C O2G GTP . A GTP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc4 C O2B GTP . A GTP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 521P _atom_sites.fract_transf_matrix[1][1] 0.024691 _atom_sites.fract_transf_matrix[1][2] 0.014256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 168 168 MG MG . C 3 GTP A 1 167 167 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 5.135 32.357 21.845 1 20 ? PG GTP 167 A 1 HETATM 2 O O1G GTP . . . C 3 5.049 33.027 23.186 1 20 ? O1G GTP 167 A 1 HETATM 3 O O2G GTP . . . C 3 4.394 32.967 20.695 1 20 ? O2G GTP 167 A 1 HETATM 4 O O3G GTP . . . C 3 4.536 30.889 22.028 1 20 ? O3G GTP 167 A 1 HETATM 5 O O3B GTP . . . C 3 6.753 32.128 21.492 1 20 ? O3B GTP 167 A 1 HETATM 6 P PB GTP . . . C 3 7.25 32 19.963 1 20 ? PB GTP 167 A 1 HETATM 7 O O1B GTP . . . C 3 7.37 30.553 19.777 1 20 ? O1B GTP 167 A 1 HETATM 8 O O2B GTP . . . C 3 6.31 32.647 19.043 1 20 ? O2B GTP 167 A 1 HETATM 9 O O3A GTP . . . C 3 8.729 32.679 19.779 1 20 ? O3A GTP 167 A 1 HETATM 10 P PA GTP . . . C 3 9.253 34.256 19.394 1 20 ? PA GTP 167 A 1 HETATM 11 O O1A GTP . . . C 3 9.491 34.386 17.917 1 20 ? O1A GTP 167 A 1 HETATM 12 O O2A GTP . . . C 3 8.616 35.342 20.168 1 20 ? O2A GTP 167 A 1 HETATM 13 O O5' GTP . . . C 3 10.725 34.26 19.999 1 20 ? O5' GTP 167 A 1 HETATM 14 C C5' GTP . . . C 3 11.015 33.902 21.349 1 20 ? C5' GTP 167 A 1 HETATM 15 C C4' GTP . . . C 3 12.468 34.202 21.612 1 20 ? C4' GTP 167 A 1 HETATM 16 O O4' GTP . . . C 3 13.457 33.446 20.828 1 20 ? O4' GTP 167 A 1 HETATM 17 C C3' GTP . . . C 3 12.665 35.692 21.301 1 20 ? C3' GTP 167 A 1 HETATM 18 O O3' GTP . . . C 3 13.397 36.17 22.438 1 20 ? O3' GTP 167 A 1 HETATM 19 C C2' GTP . . . C 3 13.449 35.698 19.971 1 20 ? C2' GTP 167 A 1 HETATM 20 O O2' GTP . . . C 3 14.319 36.887 19.829 1 20 ? O2' GTP 167 A 1 HETATM 21 C C1' GTP . . . C 3 14.237 34.378 20.089 1 20 ? C1' GTP 167 A 1 HETATM 22 N N9 GTP . . . C 3 14.371 33.685 18.835 1 20 ? N9 GTP 167 A 1 HETATM 23 C C8 GTP . . . C 3 13.468 33.447 17.861 1 20 ? C8 GTP 167 A 1 HETATM 24 N N7 GTP . . . C 3 13.934 32.933 16.752 1 20 ? N7 GTP 167 A 1 HETATM 25 C C5 GTP . . . C 3 15.254 32.684 17.098 1 20 ? C5 GTP 167 A 1 HETATM 26 C C6 GTP . . . C 3 16.324 32.139 16.343 1 20 ? C6 GTP 167 A 1 HETATM 27 O O6 GTP . . . C 3 16.319 31.649 15.242 1 20 ? O6 GTP 167 A 1 HETATM 28 N N1 GTP . . . C 3 17.524 32.216 17.003 1 20 ? N1 GTP 167 A 1 HETATM 29 C C2 GTP . . . C 3 17.722 32.903 18.197 1 20 ? C2 GTP 167 A 1 HETATM 30 N N2 GTP . . . C 3 18.971 33.257 18.537 1 20 ? N2 GTP 167 A 1 HETATM 31 N N3 GTP . . . C 3 16.712 33.342 18.938 1 20 ? N3 GTP 167 A 1 HETATM 32 C C4 GTP . . . C 3 15.515 33.194 18.344 1 20 ? C4 GTP 167 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #