data_5A0A # _model_server_result.job_id RI5uSihQIwzk9NcUjeBVbA _model_server_result.datetime_utc '2024-11-14 18:07:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1250}' # _entry.id 5A0A # _exptl.entry_id 5A0A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5A0A _cell.length_a 72.712 _cell.length_b 72.712 _cell.length_c 69.583 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A0A _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG E 1245 NAG 2 n B FUC 2 A 2 FUC E 1246 FUC 2 n C NAG 1 B 1 NAG E 1248 NAG 2 n C FUC 2 B 2 FUC E 1249 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 E CYS 42 1_555 A SG CYS 42 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 122 E CYS 136 1_555 A SG CYS 179 E CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 152 E CYS 168 1_555 A SG CYS 158 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 169 E CYS 191 1_555 A SG CYS 194 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 95 E ASN 109 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A ND2 ASN 144 E ASN 159 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 B O6 NAG . A NAG 1 1_555 B C1 FUC . A FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 C O6 NAG . B NAG 1 1_555 C C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 5A0A _atom_sites.fract_transf_matrix[1][1] 0.013753 _atom_sites.fract_transf_matrix[1][2] 0.00794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 JJS E 1 1244 1244 JJS JJS . E 4 NAG E 1 1247 1247 NAG NAG . F 5 EPE E 1 1250 1250 EPE EPE . G 6 HOH E 1 2001 2001 HOH HOH . G 6 HOH E 2 2002 2002 HOH HOH . G 6 HOH E 3 2003 2003 HOH HOH . G 6 HOH E 4 2004 2004 HOH HOH . G 6 HOH E 5 2005 2005 HOH HOH . G 6 HOH E 6 2006 2006 HOH HOH . G 6 HOH E 7 2007 2007 HOH HOH . G 6 HOH E 8 2008 2008 HOH HOH . G 6 HOH E 9 2009 2009 HOH HOH . G 6 HOH E 10 2010 2010 HOH HOH . G 6 HOH E 11 2011 2011 HOH HOH . G 6 HOH E 12 2012 2012 HOH HOH . G 6 HOH E 13 2013 2013 HOH HOH . G 6 HOH E 14 2014 2014 HOH HOH . G 6 HOH E 15 2015 2015 HOH HOH . G 6 HOH E 16 2016 2016 HOH HOH . G 6 HOH E 17 2017 2017 HOH HOH . G 6 HOH E 18 2018 2018 HOH HOH . G 6 HOH E 19 2019 2019 HOH HOH . G 6 HOH E 20 2020 2020 HOH HOH . G 6 HOH E 21 2021 2021 HOH HOH . G 6 HOH E 22 2022 2022 HOH HOH . G 6 HOH E 23 2023 2023 HOH HOH . G 6 HOH E 24 2024 2024 HOH HOH . G 6 HOH E 25 2025 2025 HOH HOH . G 6 HOH E 26 2026 2026 HOH HOH . G 6 HOH E 27 2027 2027 HOH HOH . G 6 HOH E 28 2028 2028 HOH HOH . G 6 HOH E 29 2029 2029 HOH HOH . G 6 HOH E 30 2030 2030 HOH HOH . G 6 HOH E 31 2031 2031 HOH HOH . G 6 HOH E 32 2032 2032 HOH HOH . G 6 HOH E 33 2033 2033 HOH HOH . G 6 HOH E 34 2034 2034 HOH HOH . G 6 HOH E 35 2035 2035 HOH HOH . G 6 HOH E 36 2036 2036 HOH HOH . G 6 HOH E 37 2037 2037 HOH HOH . G 6 HOH E 38 2038 2038 HOH HOH . G 6 HOH E 39 2039 2039 HOH HOH . G 6 HOH E 40 2040 2040 HOH HOH . G 6 HOH E 41 2041 2041 HOH HOH . G 6 HOH E 42 2042 2042 HOH HOH . G 6 HOH E 43 2043 2043 HOH HOH . G 6 HOH E 44 2044 2044 HOH HOH . G 6 HOH E 45 2045 2045 HOH HOH . G 6 HOH E 46 2046 2046 HOH HOH . G 6 HOH E 47 2047 2047 HOH HOH . G 6 HOH E 48 2048 2048 HOH HOH . G 6 HOH E 49 2049 2049 HOH HOH . G 6 HOH E 50 2050 2050 HOH HOH . G 6 HOH E 51 2051 2051 HOH HOH . G 6 HOH E 52 2052 2052 HOH HOH . G 6 HOH E 53 2053 2053 HOH HOH . G 6 HOH E 54 2054 2054 HOH HOH . G 6 HOH E 55 2055 2055 HOH HOH . G 6 HOH E 56 2056 2056 HOH HOH . G 6 HOH E 57 2057 2057 HOH HOH . G 6 HOH E 58 2058 2058 HOH HOH . G 6 HOH E 59 2059 2059 HOH HOH . G 6 HOH E 60 2060 2060 HOH HOH . G 6 HOH E 61 2061 2061 HOH HOH . G 6 HOH E 62 2062 2062 HOH HOH . G 6 HOH E 63 2063 2063 HOH HOH . G 6 HOH E 64 2064 2064 HOH HOH . G 6 HOH E 65 2065 2065 HOH HOH . G 6 HOH E 66 2066 2066 HOH HOH . G 6 HOH E 67 2067 2067 HOH HOH . G 6 HOH E 68 2068 2068 HOH HOH . G 6 HOH E 69 2069 2069 HOH HOH . G 6 HOH E 70 2070 2070 HOH HOH . G 6 HOH E 71 2071 2071 HOH HOH . G 6 HOH E 72 2072 2072 HOH HOH . G 6 HOH E 73 2073 2073 HOH HOH . G 6 HOH E 74 2074 2074 HOH HOH . G 6 HOH E 75 2075 2075 HOH HOH . G 6 HOH E 76 2076 2076 HOH HOH . G 6 HOH E 77 2077 2077 HOH HOH . G 6 HOH E 78 2078 2078 HOH HOH . G 6 HOH E 79 2079 2079 HOH HOH . G 6 HOH E 80 2080 2080 HOH HOH . G 6 HOH E 81 2081 2081 HOH HOH . G 6 HOH E 82 2082 2082 HOH HOH . G 6 HOH E 83 2083 2083 HOH HOH . G 6 HOH E 84 2084 2084 HOH HOH . G 6 HOH E 85 2085 2085 HOH HOH . G 6 HOH E 86 2086 2086 HOH HOH . G 6 HOH E 87 2087 2087 HOH HOH . G 6 HOH E 88 2088 2088 HOH HOH . G 6 HOH E 89 2089 2089 HOH HOH . G 6 HOH E 90 2090 2090 HOH HOH . G 6 HOH E 91 2091 2091 HOH HOH . G 6 HOH E 92 2092 2092 HOH HOH . G 6 HOH E 93 2093 2093 HOH HOH . G 6 HOH E 94 2094 2094 HOH HOH . G 6 HOH E 95 2095 2095 HOH HOH . G 6 HOH E 96 2096 2096 HOH HOH . G 6 HOH E 97 2097 2097 HOH HOH . G 6 HOH E 98 2098 2098 HOH HOH . G 6 HOH E 99 2099 2099 HOH HOH . G 6 HOH E 100 2100 2100 HOH HOH . G 6 HOH E 101 2101 2101 HOH HOH . G 6 HOH E 102 2102 2102 HOH HOH . G 6 HOH E 103 2103 2103 HOH HOH . G 6 HOH E 104 2104 2104 HOH HOH . G 6 HOH E 105 2105 2105 HOH HOH . G 6 HOH E 106 2106 2106 HOH HOH . G 6 HOH E 107 2107 2107 HOH HOH . G 6 HOH E 108 2108 2108 HOH HOH . G 6 HOH E 109 2109 2109 HOH HOH . G 6 HOH E 110 2110 2110 HOH HOH . G 6 HOH E 111 2111 2111 HOH HOH . G 6 HOH E 112 2112 2112 HOH HOH . G 6 HOH E 113 2113 2113 HOH HOH . G 6 HOH E 114 2114 2114 HOH HOH . G 6 HOH E 115 2115 2115 HOH HOH . G 6 HOH E 116 2116 2116 HOH HOH . G 6 HOH E 117 2117 2117 HOH HOH . G 6 HOH E 118 2118 2118 HOH HOH . G 6 HOH E 119 2119 2119 HOH HOH . G 6 HOH E 120 2120 2120 HOH HOH . G 6 HOH E 121 2121 2121 HOH HOH . G 6 HOH E 122 2122 2122 HOH HOH . G 6 HOH E 123 2123 2123 HOH HOH . G 6 HOH E 124 2124 2124 HOH HOH . G 6 HOH E 125 2125 2125 HOH HOH . G 6 HOH E 126 2126 2126 HOH HOH . G 6 HOH E 127 2127 2127 HOH HOH . G 6 HOH E 128 2128 2128 HOH HOH . G 6 HOH E 129 2129 2129 HOH HOH . G 6 HOH E 130 2130 2130 HOH HOH . G 6 HOH E 131 2131 2131 HOH HOH . G 6 HOH E 132 2132 2132 HOH HOH . G 6 HOH E 133 2133 2133 HOH HOH . G 6 HOH E 134 2134 2134 HOH HOH . G 6 HOH E 135 2135 2135 HOH HOH . G 6 HOH E 136 2136 2136 HOH HOH . G 6 HOH E 137 2137 2137 HOH HOH . G 6 HOH E 138 2138 2138 HOH HOH . G 6 HOH E 139 2139 2139 HOH HOH . G 6 HOH E 140 2140 2140 HOH HOH . G 6 HOH E 141 2141 2141 HOH HOH . G 6 HOH E 142 2142 2142 HOH HOH . G 6 HOH E 143 2143 2143 HOH HOH . G 6 HOH E 144 2144 2144 HOH HOH . G 6 HOH E 145 2145 2145 HOH HOH . G 6 HOH E 146 2146 2146 HOH HOH . G 6 HOH E 147 2147 2147 HOH HOH . G 6 HOH E 148 2148 2148 HOH HOH . G 6 HOH E 149 2149 2149 HOH HOH . G 6 HOH E 150 2150 2150 HOH HOH . G 6 HOH E 151 2151 2151 HOH HOH . G 6 HOH E 152 2152 2152 HOH HOH . G 6 HOH E 153 2153 2153 HOH HOH . G 6 HOH E 154 2154 2154 HOH HOH . G 6 HOH E 155 2155 2155 HOH HOH . G 6 HOH E 156 2156 2156 HOH HOH . G 6 HOH E 157 2157 2157 HOH HOH . G 6 HOH E 158 2158 2158 HOH HOH . G 6 HOH E 159 2159 2159 HOH HOH . G 6 HOH E 160 2160 2160 HOH HOH . G 6 HOH E 161 2161 2161 HOH HOH . G 6 HOH E 162 2162 2162 HOH HOH . G 6 HOH E 163 2163 2163 HOH HOH . G 6 HOH E 164 2164 2164 HOH HOH . G 6 HOH E 165 2165 2165 HOH HOH . G 6 HOH E 166 2166 2166 HOH HOH . G 6 HOH E 167 2167 2167 HOH HOH . G 6 HOH E 168 2168 2168 HOH HOH . G 6 HOH E 169 2169 2169 HOH HOH . G 6 HOH E 170 2170 2170 HOH HOH . G 6 HOH E 171 2171 2171 HOH HOH . G 6 HOH E 172 2172 2172 HOH HOH . G 6 HOH E 173 2173 2173 HOH HOH . G 6 HOH E 174 2174 2174 HOH HOH . G 6 HOH E 175 2175 2175 HOH HOH . G 6 HOH E 176 2176 2176 HOH HOH . G 6 HOH E 177 2177 2177 HOH HOH . G 6 HOH E 178 2178 2178 HOH HOH . G 6 HOH E 179 2179 2179 HOH HOH . G 6 HOH E 180 2180 2180 HOH HOH . G 6 HOH E 181 2181 2181 HOH HOH . G 6 HOH E 182 2182 2182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 5 -34.834 30.561 -0.382 1 35.49 ? N1 EPE 1250 E 1 HETATM 2 C C2 EPE . . . F 5 -35.864 29.836 -1.137 1 36.83 ? C2 EPE 1250 E 1 HETATM 3 C C3 EPE . . . F 5 -36.864 29.248 -0.149 1 37.95 ? C3 EPE 1250 E 1 HETATM 4 N N4 EPE . . . F 5 -36.236 28.511 0.948 1 40.62 ? N4 EPE 1250 E 1 HETATM 5 C C5 EPE . . . F 5 -35 29.018 1.554 1 38.72 ? C5 EPE 1250 E 1 HETATM 6 C C6 EPE . . . F 5 -34.064 29.665 0.521 1 36.93 ? C6 EPE 1250 E 1 HETATM 7 C C7 EPE . . . F 5 -37.088 27.629 1.73 1 43.88 ? C7 EPE 1250 E 1 HETATM 8 C C8 EPE . . . F 5 -36.48 26.22 1.811 1 49.76 ? C8 EPE 1250 E 1 HETATM 9 O O8 EPE . . . F 5 -36.788 25.619 3.055 1 54.24 ? O8 EPE 1250 E 1 HETATM 10 C C9 EPE . . . F 5 -33.942 31.206 -1.357 1 34.45 ? C9 EPE 1250 E 1 HETATM 11 C C10 EPE . . . F 5 -33.016 32.162 -0.614 1 30.81 ? C10 EPE 1250 E 1 HETATM 12 S S EPE . . . F 5 -31.867 33.068 -1.692 1 29.8 ? S EPE 1250 E 1 HETATM 13 O O1S EPE . . . F 5 -31.159 32.189 -2.644 1 33.7 ? O1S EPE 1250 E 1 HETATM 14 O O2S EPE . . . F 5 -30.972 33.73 -0.752 1 30.26 ? O2S EPE 1250 E 1 HETATM 15 O O3S EPE . . . F 5 -32.591 34.081 -2.449 1 29.59 ? O3S EPE 1250 E 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #