data_5A0Q
#
_model_server_result.job_id            nVC_df5ASjTthYccuQdy8A 
_model_server_result.datetime_utc      '2024-12-21 16:22:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a0q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":300}' 
#
_entry.id    5A0Q 
#
_exptl.entry_id    5A0Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              949.377 
_entity.id                          15 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADA-(AHX)3-(LEU)3-VINYL SULFONE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5A0Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A0Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 15 CA N N 
? 15 DA N N 
? 15 EA N N 
? 15 FA N N 
? 15 GA N N 
? 15 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 M SG CYS 54 M CYS 54 1_555 M SG CYS 61 M CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf2 AA SG CYS 54 a CYS 54 1_555 AA SG CYS 61 a CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
covale ? covale1 H OG1 THR 1 H THR 1 1_555 CA C21 KNM . H KNM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale2 I OG1 THR 1 I THR 1 1_555 DA C21 KNM . I KNM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale3 L OG1 THR 1 L THR 1 1_555 EA C21 KNM . L KNM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
covale ? covale4 V OG1 THR 1 V THR 1 1_555 FA C21 KNM . V KNM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale5 W OG1 THR 1 W THR 1 1_555 GA C21 KNM . W KNM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale6 Z OG1 THR 1 Z THR 1 1_555 HA C21 KNM . Z KNM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
#
_chem_comp.formula           'C51 H92 N6 O8 S' 
_chem_comp.formula_weight    949.377 
_chem_comp.id                KNM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADA-(AHX)3-(LEU)3-VINYL SULFONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C20 KNM sing 171 n n 
C18 C19 KNM sing 172 n n 
C18 C17 KNM sing 173 n n 
O5 S1 KNM doub 174 n n 
C21 C15 KNM sing 175 n n 
C21 C16 KNM sing 176 n n 
C15 C17 KNM sing 177 n n 
C15 N3 KNM sing 178 n n 
C16 S1 KNM sing 179 n n 
S1 C22 KNM sing 180 n n 
S1 O4 KNM doub 181 n n 
N3 C14 KNM sing 182 n n 
O2 C14 KNM doub 183 n n 
C14 C9 KNM sing 184 n n 
C9 C10 KNM sing 185 n n 
C9 N2 KNM sing 186 n n 
C13 C11 KNM sing 187 n n 
C10 C11 KNM sing 188 n n 
N2 C8 KNM sing 189 n n 
C11 C12 KNM sing 190 n n 
C8 O3 KNM doub 191 n n 
C8 C3 KNM sing 192 n n 
C7 C5 KNM sing 193 n n 
C4 C3 KNM sing 194 n n 
C4 C5 KNM sing 195 n n 
C3 N1 KNM sing 196 n n 
C5 C6 KNM sing 197 n n 
N1 C1 KNM sing 198 n n 
C2 C1 KNM sing 199 n n 
C1 O1 KNM doub 200 n n 
C2 H1 KNM sing 201 n n 
C2 H2 KNM sing 202 n n 
N1 H4 KNM sing 203 n n 
C3 H5 KNM sing 204 n n 
C4 H6 KNM sing 205 n n 
C4 H7 KNM sing 206 n n 
C5 H8 KNM sing 207 n n 
C6 H9 KNM sing 208 n n 
C6 H10 KNM sing 209 n n 
C6 H11 KNM sing 210 n n 
C7 H12 KNM sing 211 n n 
C7 H13 KNM sing 212 n n 
C7 H14 KNM sing 213 n n 
N2 H15 KNM sing 214 n n 
C9 H16 KNM sing 215 n n 
C10 H17 KNM sing 216 n n 
C10 H18 KNM sing 217 n n 
C11 H19 KNM sing 218 n n 
C12 H20 KNM sing 219 n n 
C12 H21 KNM sing 220 n n 
C12 H22 KNM sing 221 n n 
C13 H23 KNM sing 222 n n 
C13 H24 KNM sing 223 n n 
C13 H25 KNM sing 224 n n 
N3 H26 KNM sing 225 n n 
C15 H27 KNM sing 226 n n 
C16 H28 KNM sing 227 n n 
C16 H29 KNM sing 228 n n 
C17 H30 KNM sing 229 n n 
C17 H31 KNM sing 230 n n 
C18 H32 KNM sing 231 n n 
C19 H33 KNM sing 232 n n 
C19 H34 KNM sing 233 n n 
C19 H35 KNM sing 234 n n 
C20 H36 KNM sing 235 n n 
C20 H37 KNM sing 236 n n 
C20 H38 KNM sing 237 n n 
C21 H39 KNM sing 238 n n 
C21 H40 KNM sing 239 n n 
C22 H41 KNM sing 240 n n 
C22 H42 KNM sing 241 n n 
C22 H43 KNM sing 242 n n 
C2 C23 KNM sing 243 n n 
C23 C24 KNM sing 244 n n 
C24 C25 KNM sing 245 n n 
C25 C26 KNM sing 246 n n 
C26 C27 KNM sing 247 n n 
C27 N4 KNM sing 248 n n 
N4 C28 KNM sing 249 n n 
C28 O6 KNM doub 250 n n 
C28 C29 KNM sing 251 n n 
C29 C30 KNM sing 252 n n 
C30 C61 KNM sing 253 n n 
C61 C62 KNM sing 254 n n 
C62 C31 KNM sing 255 n n 
C31 N5 KNM sing 256 n n 
N5 C32 KNM sing 257 n n 
C32 C33 KNM sing 258 n n 
C32 O7 KNM doub 259 n n 
C33 C34 KNM sing 260 n n 
C34 C35 KNM sing 261 n n 
C35 C36 KNM sing 262 n n 
C36 C37 KNM sing 263 n n 
C37 N6 KNM sing 264 n n 
N6 C38 KNM sing 265 n n 
C38 C39 KNM sing 266 n n 
C38 O8 KNM doub 267 n n 
C39 C40 KNM sing 268 n n 
C40 C42 KNM sing 269 n n 
C40 C43 KNM sing 270 n n 
C40 C44 KNM sing 271 n n 
C42 C52 KNM sing 272 n n 
C43 C47 KNM sing 273 n n 
C47 C48 KNM sing 274 n n 
C52 C51 KNM sing 275 n n 
C48 C49 KNM sing 276 n n 
C49 C51 KNM sing 277 n n 
C44 C49 KNM sing 278 n n 
C47 C50 KNM sing 279 n n 
C50 C52 KNM sing 280 n n 
C52 H44 KNM sing 281 n n 
C23 H3 KNM sing 282 n n 
C23 H45 KNM sing 283 n n 
C24 H46 KNM sing 284 n n 
C24 H47 KNM sing 285 n n 
C25 H48 KNM sing 286 n n 
C25 H49 KNM sing 287 n n 
C26 H50 KNM sing 288 n n 
C26 H51 KNM sing 289 n n 
C27 H52 KNM sing 290 n n 
C27 H53 KNM sing 291 n n 
N4 H54 KNM sing 292 n n 
C29 H55 KNM sing 293 n n 
C29 H56 KNM sing 294 n n 
C30 H57 KNM sing 295 n n 
C30 H58 KNM sing 296 n n 
C61 H59 KNM sing 297 n n 
C61 H60 KNM sing 298 n n 
C62 H61 KNM sing 299 n n 
C62 H62 KNM sing 300 n n 
C31 H63 KNM sing 301 n n 
C31 H64 KNM sing 302 n n 
N5 H65 KNM sing 303 n n 
C33 H66 KNM sing 304 n n 
C33 H67 KNM sing 305 n n 
C34 H68 KNM sing 306 n n 
C34 H69 KNM sing 307 n n 
C35 H70 KNM sing 308 n n 
C35 H71 KNM sing 309 n n 
C36 H72 KNM sing 310 n n 
C36 H73 KNM sing 311 n n 
C37 H74 KNM sing 312 n n 
C37 H75 KNM sing 313 n n 
N6 H76 KNM sing 314 n n 
C39 H77 KNM sing 315 n n 
C39 H78 KNM sing 316 n n 
C42 H79 KNM sing 317 n n 
C42 H80 KNM sing 318 n n 
C43 H81 KNM sing 319 n n 
C43 H82 KNM sing 320 n n 
C44 H83 KNM sing 321 n n 
C44 H84 KNM sing 322 n n 
C47 H85 KNM sing 323 n n 
C48 H86 KNM sing 324 n n 
C48 H87 KNM sing 325 n n 
C51 H88 KNM sing 326 n n 
C51 H89 KNM sing 327 n n 
C49 H90 KNM sing 328 n n 
C50 H91 KNM sing 329 n n 
C50 H92 KNM sing 330 n n 
#
_atom_sites.entry_id                     5A0Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 15 KNM H 1 300 300 KNM KNM . 
DA 15 KNM I 1 300 300 KNM KNM . 
EA 15 KNM L 1 300 300 KNM KNM . 
FA 15 KNM V 1 300 300 KNM KNM . 
GA 15 KNM W 1 300 300 KNM KNM . 
HA 15 KNM Z 1 300 300 KNM KNM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 KNM . . . HA 15 20.109 6.772 6.578 1 0 ? O1 KNM 300 Z 1 
HETATM 2 C C1 KNM . . . HA 15 20.782 7.618 6.018 1 0 ? C1 KNM 300 Z 1 
HETATM 3 C C2 KNM . . . HA 15 20.628 7.926 4.558 1 0 ? C2 KNM 300 Z 1 
HETATM 4 N N1 KNM . . . HA 15 21.703 8.324 6.665 1 0 ? N1 KNM 300 Z 1 
HETATM 5 C C3 KNM . . . HA 15 22.311 7.823 7.88 1 0 ? C3 KNM 300 Z 1 
HETATM 6 C C4 KNM . . . HA 15 23.655 8.504 8.109 1 0 ? C4 KNM 300 Z 1 
HETATM 7 C C5 KNM . . . HA 15 24.268 8.105 9.447 1 0 ? C5 KNM 300 Z 1 
HETATM 8 C C6 KNM . . . HA 15 25.373 7.073 9.256 1 0 ? C6 KNM 300 Z 1 
HETATM 9 C C7 KNM . . . HA 15 24.788 9.324 10.197 1 0 ? C7 KNM 300 Z 1 
HETATM 10 C C8 KNM . . . HA 15 21.438 8.081 9.066 1 0 ? C8 KNM 300 Z 1 
HETATM 11 N N2 KNM . . . HA 15 21.593 7.261 10.098 1 0 ? N2 KNM 300 Z 1 
HETATM 12 C C9 KNM . . . HA 15 20.806 7.424 11.299 1 0 ? C9 KNM 300 Z 1 
HETATM 13 C C10 KNM . . . HA 15 20.013 6.16 11.614 1 0 ? C10 KNM 300 Z 1 
HETATM 14 C C11 KNM . . . HA 15 19.699 5.317 10.382 1 0 ? C11 KNM 300 Z 1 
HETATM 15 C C12 KNM . . . HA 15 19.249 6.18 9.21 1 0 ? C12 KNM 300 Z 1 
HETATM 16 C C13 KNM . . . HA 15 20.893 4.454 9.994 1 0 ? C13 KNM 300 Z 1 
HETATM 17 C C14 KNM . . . HA 15 21.708 7.717 12.451 1 0 ? C14 KNM 300 Z 1 
HETATM 18 O O2 KNM . . . HA 15 22.903 7.522 12.359 1 0 ? O2 KNM 300 Z 1 
HETATM 19 N N3 KNM . . . HA 15 21.145 8.181 13.553 1 0 ? N3 KNM 300 Z 1 
HETATM 20 C C15 KNM . . . HA 15 21.726 7.86 14.836 1 0 ? C15 KNM 300 Z 1 
HETATM 21 C C16 KNM . . . HA 15 20.479 5.732 14.71 1 0 ? C16 KNM 300 Z 1 
HETATM 22 C C17 KNM . . . HA 15 22.009 9.122 15.642 1 0 ? C17 KNM 300 Z 1 
HETATM 23 C C18 KNM . . . HA 15 22.983 10.055 14.935 1 0 ? C18 KNM 300 Z 1 
HETATM 24 C C19 KNM . . . HA 15 24.127 9.3 14.281 1 0 ? C19 KNM 300 Z 1 
HETATM 25 C C20 KNM . . . HA 15 23.539 11.081 15.909 1 0 ? C20 KNM 300 Z 1 
HETATM 26 O O3 KNM . . . HA 15 20.642 9.005 9.059 1 0 ? O3 KNM 300 Z 1 
HETATM 27 C C21 KNM . . . HA 15 20.783 6.937 15.594 1 0 ? C21 KNM 300 Z 1 
HETATM 28 S S1 KNM . . . HA 15 18.882 5.289 14.815 1 0 ? S1 KNM 300 Z 1 
HETATM 29 O O4 KNM . . . HA 15 18.397 5.569 16.134 1 0 ? O4 KNM 300 Z 1 
HETATM 30 O O5 KNM . . . HA 15 18.113 6.029 13.857 1 0 ? O5 KNM 300 Z 1 
HETATM 31 C C22 KNM . . . HA 15 18.731 3.668 14.49 1 0 ? C22 KNM 300 Z 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#